Efficient Monte Carlo methods for cyclic peptides

Molecular Physics

Volumn 97, Issue 4, 1999, Pages 559-580

  Wu, M G ^a   Deem, M W ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0001056843     PISSN: 00268976     EISSN: 13623028     Source Type: Journal    
DOI: 10.1080/00268979909482855     Document Type: Article

References (38)

1. Kandel, E., and Abel, T., 1995. Science, 268:825
2. Nelson, L. S., Rosoff, M. L., and Li, C., 1998. Science, 281:1686
3. Olivera, B. M., Rivier, J., Clark, C., Ramilo, C. A., Corpuz, G. P., Abogadie, F. C., Mena, E. E., Woodward, S. R., Hillyard, D. R., and Cruz, L. J., 1990. Science, 249:257
4. Clackson, T., and Wells, J. A., 1994. Trends Biotech, 12:173
5. Alberg, D. G., and Schreiber, S. L., 1993. Science, 262:248
6. Ruoslahti, E., 1992. J. Cancer, 66:239
7. O'Neil, K. T., Hoess, R. H., Jackson, S. A., Ramachandran, N., Mousa, S. A., and DeGrado, W. F., 1992. Proteins:Struct. Funct. Genet., 14:509
8. Boyd, D. B., 1998. Rational Drug Design Edited by:Reedy, M. R., and Parrill, A. L., Washington, DC:American Chemical Society.
9. Bruccoleri, R. E., and Karplus, M., 1990. Biopolymers, 29:1847
10. Tshjishita, H., Moriguchi, I., and Hirono, S., 1994. Biophys. J., 66:1815
11. Frenkel, D., and Smit, B., 1996. Understanding Molecular Simulation San Diego:Academic Press Inc.).
12. de Pablo, J. J., Laso, M., and Suter, U. W., 1992. J. chem. Phys., 96:6157
13. Smit, B., 1996. Phys. scripta, T66:80
14. Smit, B., 1996. Fluid Phase Equilibria, 116:249
15. de Pablo, J. J., 1995. Fluid Phase Equilibria, 104:195
16. Bates, S. P., van Well, W. J. M., and van Santen, R. A., 1996. J. phys. Chem., 100:17573
17. Dodd, L. R., Boone, T. D., and Theodorou, D. N., 1993. Molec. Phys., 78:961
18. Deem, M. W., and Bader, J. S., 1996. Molec. Phys., 87:1245
19. Boone, T. D., 1995. Prediction of Glass-melt Behavior and Penetrant Sorption Thermodynamics in Vinyl Polymers via Molecular Simulations UC Berkeley, USA PhD thesis
20. Pant, P., and Theodorou, D. N., 1995. Macromolecules, 18:7224
21. Mavrantzas, V., Boone, T., Zervopoulou, E., and Theodorou, D. N., 1999. Macromolecules, to appear.
22. Meirovitch, H., 1985. Phys. Rev. A, 68:3699
23. Geyer, C. J., 1991. Computing Science and Statistics 156–163. American Statistical Association. in
24. Hukushima, K., and Nemoto, K., 1996. J. phys. Soc. Jpn., 65:1604
25. Marinari, E., Parisi, G., and Ruiz-Lorenzo, J., 1998. Spin Glasses and Random Fields, Vol. 12, Directions in Condensed Matter Physics Edited by:Young, A., Singapore:World Scientific.
26. Tesi, M. C., Janse van Rensburg, E. J., Orlandini, E., and Whittington, S. G., 1996. J. stat. Phys., 82:155
27. Boyd, G., 1998. Nucl. Phys. B, 60A (Suppl.):341 January
28. Hansmann, U. H. E., 1997. Chem. Phys. Lett., 28:140
29. Falcioni, M., and Deem, M. W., 1999. J. chem. Phys., 110:1754
30. Weiner, S. J., Kollman, P. A., Nguyen, D. T., and Case, D. A., 1986. J. Comput. Chem., 7:230
31. Kang, Y. K., No, K. T., and Scheraga, H. A., 1996. J. phys. Chem., 100:15588
32. Mackerell Jr, A. D., Bashford, D., Bellott, M., Dunbrack Jr, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., III, Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiórkiewicz-Kuczera, J., Yin, D., and Karplus, M., 1998. J. phys. Chem. B, 102:3586
33. Smith, P. E., Pettitt, B. M., and Karplus, M., 1993. J. phys. Chem., 97:6907
34. Flory, P. J., 1969. Statistical Mechanics of Chain Molecules New York:Wiley.
35. Press, W. H., Teukolsky, S. A., Vetterling, W. T., and Flannery, B. P., 1992. Numerical Recipes in C, 2nd Edn New York:Cambridge.
36. Escobedo, F. A., and de Pablo, J. J., 1995. J. chem. Phys., 104:4788
37. Smit, B., and Siepmann, J. I., 1994. J. Am. chem. Soc., 98:8442
38. Hoffmann, D., and Knapp, E. W., 1996. Eur. Biophys. J., 24:387