Structural phase transition of di-block polyampholyte

Molecular Simulation

Volumn 22, Issue 4-5, 1999, Pages 285-301

  Shimizu, H ^a,c   Uehara, K ^b   Yamamoto, K ^a   Hiwatari, Y ^a  

^a KANAZAWA UNIVERSITY   (Japan)

^b NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^c SHINSHU UNIVERSITY   (Japan)

Author keywords

Charged polymer; Constraint dynamics; Coulomb interaction; Molecular dynamics simulation; Multicanonical algorithm; Structural transition

Indexed keywords

EID: 0000399357     PISSN: 08927022     EISSN: None     Source Type: Journal    
DOI: 10.1080/08927029908022102     Document Type: Article

References (16)

1. Anfinsen, C. B. (1973). "Principles that Govern the Folding of Protein Chains", Science, 181, 223.
2. Levinthal, C. (1968). "Are there Pathways for Protein Folding?", J. Chim. Phys., 65, 44.
3. Minor, D. L. Jr. and Kim, P. S. (1996). "Context-dependent secondary structure formation of a designed protein sequence", Nature, 380, 730.
4. Higgs, P. G. and Joanny, J. F. (1991). "Theory of polyampholyte solutions", J. Chem. Phys., 94, 1543.
5. Kantor, Y., Li, H. and Kardar, M. (1992). "Conformations of Polyampholytes", Phys. Rev. Lett., 69, 61.
6. Kantor, Y., Kardar, M. and Li, H. (1994). "Statistical mechanics of polyampholytes", Phys. Rev. E, 49, 1383.
7. Tanaka, M., Grosberg, A. Y., Pande, V. S. and Tanaka, T. (1997). "Molecular dynamics study of the structure organization in a strongly coupled chain of charged particles", Phys. Rev. E, 56, 5798.
8. Victor, J. M. and Imbert, J. B. (1993). "Collapse of an Alternating Polyampholyte: Evidence for Tricriticality in 2 and 3 Dimensions", Europhys. Lett., 24, 189.
9. Berg, B. A. and Neuhaus, T. (1991). "Multicanonical algorithms for first order phase transitions", Phys. Lett. B, 267, 249.
10. Nakajima, N., Nakamura, H. and Kidera, A. (1997). "Multicanonical Ensemble Generated by Molecular Dynamics Simulation for Enhanced Conformational Sampling of Peptides", J. Chem. Phys., 101, 817.
11. Hoover, W. G., Ladd, A. J. C. and Moran, B. (1982). "High-Strain-Rate Plastic Flow Studied via Nonequilibrium Molecular Dynamics", Phys. Rev. Lett., 48, 1818.
12. Evans, D. J. (1983). "Computer "experiment" for nonlinear thermodynamics of Couette flow", J. Chem. Phys., 78, 3297.
13. Yoneya, M., Berendsen, H. J. C. and Hirasawa, K. (1994). "A Non-iterative Matrix Method for Constraint Molecular Dynamics Simulations", Mol. Sim., 13, 395.
14. Yoneya, M. and Ouchi, T. (1995). "Molecular Dynamics Simulations on Shared-memory Multiple Processor Computers", Mol. Sim., 15, 273.
15. Slusher, J. T. and Cummings, P. T. (1996). "Non-iterative Constraint Dynamics Using Velocity-explicit Verlet Methods", Mol. Sim., 18, 213.
16. Swope, W. C., Andersen, H. C., Berens, P. H. and Wilson, K. R. (1982). "A computer simulation method for the calculation of equilibrium constants for the formation of physical clusters of molecules: Application to small water clusters", J. Chem. Phys., 76, 637.