-
1
-
-
4744339390
-
Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum
-
Abella, M., I. Erill, M. Jara, G. Mazon, S. Campoy, and J. Barbe. 2004. Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum. Mol. Microbiol. 54:212-222.
-
(2004)
Mol. Microbiol
, vol.54
, pp. 212-222
-
-
Abella, M.1
Erill, I.2
Jara, M.3
Mazon, G.4
Campoy, S.5
Barbe, J.6
-
2
-
-
27744568353
-
Genetic composition of the Bacillus subtilis SOS system
-
Au, N., E. Kuester-Schoeck, V. Mandava, L. E. Bothwell, S. P. Canny, K. Chachu, S. A. Colavito, S. N. Fuller, E. S. Groban, L. A. Hensley, T. C. O'Brien, A. Shah, J. T. Tierney, L. L. Tomm, T. M. O'Gara, A. I. Goranov, A. D. Grossman, and C. M. Lovett. 2005. Genetic composition of the Bacillus subtilis SOS system. J. Bacteriol. 187:7655-7666.
-
(2005)
J. Bacteriol
, vol.187
, pp. 7655-7666
-
-
Au, N.1
Kuester-Schoeck, E.2
Mandava, V.3
Bothwell, L.E.4
Canny, S.P.5
Chachu, K.6
Colavito, S.A.7
Fuller, S.N.8
Groban, E.S.9
Hensley, L.A.10
O'Brien, T.C.11
Shah, A.12
Tierney, J.T.13
Tomm, L.L.14
O'Gara, T.M.15
Goranov, A.I.16
Grossman, A.D.17
Lovett, C.M.18
-
3
-
-
0023147228
-
Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
-
Berg, O. G., and P. H. von Hippel. 1987. Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 193:723-750.
-
(1987)
J. Mol. Biol
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
von Hippel, P.H.2
-
4
-
-
0036843636
-
Phenotypes of lexA mutations in Salmonella enterica: Evidence for a lethal lexA null phenotype due to the Fels-2 prophage
-
Bunny, K., J. Liu, and J. Roth. 2002. Phenotypes of lexA mutations in Salmonella enterica: evidence for a lethal lexA null phenotype due to the Fels-2 prophage. J. Bacteriol. 184:6235-6249.
-
(2002)
J. Bacteriol
, vol.184
, pp. 6235-6249
-
-
Bunny, K.1
Liu, J.2
Roth, J.3
-
5
-
-
0041663983
-
LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus
-
Campoy, S., M. Fontes, S. Padmanabhan, P. Cortes, M. Llagostera, and J. Barbe. 2003. LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus. Mol. Microbiol. 49:769-781.
-
(2003)
Mol. Microbiol
, vol.49
, pp. 769-781
-
-
Campoy, S.1
Fontes, M.2
Padmanabhan, S.3
Cortes, P.4
Llagostera, M.5
Barbe, J.6
-
6
-
-
0036855349
-
A new regulatory DNA motif of the gamma subclass Proteobacteria: Identification of the LexA protein binding site of the plant pathogen Xylella fastidiosa
-
Campoy, S., G. Mazon, A. R. Fernandez de Henestrosa, M. Llagostera, P. B. Monteiro, and J. Barbe. 2002. A new regulatory DNA motif of the gamma subclass Proteobacteria: identification of the LexA protein binding site of the plant pathogen Xylella fastidiosa. Microbiology 148:3583-3597.
-
(2002)
Microbiology
, vol.148
, pp. 3583-3597
-
-
Campoy, S.1
Mazon, G.2
Fernandez de Henestrosa, A.R.3
Llagostera, M.4
Monteiro, P.B.5
Barbe, J.6
-
7
-
-
22544483228
-
Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus
-
Campoy, S., N. Salvador, P. Cortes, I. Erill, and J. Barbe. 2005. Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus. J. Bacteriol. 187:5367-5375.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5367-5375
-
-
Campoy, S.1
Salvador, N.2
Cortes, P.3
Erill, I.4
Barbe, J.5
-
8
-
-
33846252282
-
Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin
-
Cirz, R. T., M. B. Jones, N. A. Gingles, T. D. Minogue, B. Jarrahi, S. N. Peterson, and F. E. Romesberg. 2007. Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin. J. Bacteriol. 189: 531-539.
-
(2007)
J. Bacteriol
, vol.189
, pp. 531-539
-
-
Cirz, R.T.1
Jones, M.B.2
Gingles, N.A.3
Minogue, T.D.4
Jarrahi, B.5
Peterson, S.N.6
Romesberg, F.E.7
-
9
-
-
33749585217
-
Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin
-
Cirz, R. T., B. M. O'Neill, J. A. Hammond, S. R. Head, and F. E. Romesberg. 2006. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. J. Bacteriol. 188:7101-7110.
-
(2006)
J. Bacteriol
, vol.188
, pp. 7101-7110
-
-
Cirz, R.T.1
O'Neill, B.M.2
Hammond, J.A.3
Head, S.R.4
Romesberg, F.E.5
-
10
-
-
0035023305
-
Comparative gene expression profiles following UV exposure in wildtype and SOS-deficient Escherichia coli
-
Courcelle, J., A. Khodursky, B. Peter, P. O. Brown, and P. C. Hanawalt. 2001. Comparative gene expression profiles following UV exposure in wildtype and SOS-deficient Escherichia coli. Genetics 158:41-64.
-
(2001)
Genetics
, vol.158
, pp. 41-64
-
-
Courcelle, J.1
Khodursky, A.2
Peter, B.3
Brown, P.O.4
Hanawalt, P.C.5
-
11
-
-
23644432557
-
The Leptospira interrogans lexA gene is not autoregulated
-
Cune, J., P. Cullen, G. Mazon, S. Campoy, B. Adler, and J. Barbe. 2005. The Leptospira interrogans lexA gene is not autoregulated. J. Bacteriol. 187:5841-5845.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5841-5845
-
-
Cune, J.1
Cullen, P.2
Mazon, G.3
Campoy, S.4
Adler, B.5
Barbe, J.6
-
12
-
-
35449007348
-
Eons of distress: An evolutionary perspective on the bacterial SOS response
-
Erill, I., S. Campoy, and J. Barbe. 2007. Eons of distress: an evolutionary perspective on the bacterial SOS response. FEMS Microbiol. Rev. 28:813-828.
-
(2007)
FEMS Microbiol. Rev
, vol.28
, pp. 813-828
-
-
Erill, I.1
Campoy, S.2
Barbe, J.3
-
13
-
-
31544453298
-
Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain
-
Erill, I., S. Campoy, G. Mazon, and J. Barbe. 2006. Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain. Nucleic Acids Res. 34:66-77.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 66-77
-
-
Erill, I.1
Campoy, S.2
Mazon, G.3
Barbe, J.4
-
14
-
-
0344464768
-
In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon
-
Erill, I., M. Escribano, S. Campoy, and J. Barbe. 2003. In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. Bioinformatics 19:2225-2236.
-
(2003)
Bioinformatics
, vol.19
, pp. 2225-2236
-
-
Erill, I.1
Escribano, M.2
Campoy, S.3
Barbe, J.4
-
15
-
-
0037767507
-
Characterization of a new LexA binding motif in the marine magnetotactic bacterium strain MC-1
-
Fernandez de Henestrosa, A. R., J. Cune, G. Mazon, B. L. Dubbels, D. A. Bazylinski, and J. Barbe. 2003. Characterization of a new LexA binding motif in the marine magnetotactic bacterium strain MC-1. J. Bacteriol. 185:4471-4482.
-
(2003)
J. Bacteriol
, vol.185
, pp. 4471-4482
-
-
Fernandez de Henestrosa, A.R.1
Cune, J.2
Mazon, G.3
Dubbels, B.L.4
Bazylinski, D.A.5
Barbe, J.6
-
16
-
-
0038401982
-
Identification of additional genes belonging to the LexA regulon in Escherichia coli
-
Fernandez De Henestrosa, A. R., T. Ogi, S. Aoyagi, D. Chafin, J. J. Hayes, H. Ohmori, and R. Woodgate. 2000. Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol. Microbiol. 35: 1560-1572.
-
(2000)
Mol. Microbiol
, vol.35
, pp. 1560-1572
-
-
Fernandez De Henestrosa, A.R.1
Ogi, T.2
Aoyagi, S.3
Chafin, D.4
Hayes, J.J.5
Ohmori, H.6
Woodgate, R.7
-
17
-
-
19444386290
-
An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus
-
Galhardo, R. S., R. P. Rocha, M. V. Marques, and C. F. Menck. 2005. An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus. Nucleic Acids Res. 33:2603-2614.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2603-2614
-
-
Galhardo, R.S.1
Rocha, R.P.2
Marques, M.V.3
Menck, C.F.4
-
18
-
-
0345269755
-
Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: Differing responses of lexA and recA to DNA damage
-
Jara, M., C. Nunez, S. Campoy, A. R. Fernandez de Henestrosa, D. R. Lovley, and J. Barbe. 2003. Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage. J. Bacteriol. 185:2493-2502.
-
(2003)
J. Bacteriol
, vol.185
, pp. 2493-2502
-
-
Jara, M.1
Nunez, C.2
Campoy, S.3
Fernandez de Henestrosa, A.R.4
Lovley, D.R.5
Barbe, J.6
-
19
-
-
0036224939
-
Over 1000 genes are involved in the DNA damage response of Escherichia coli
-
Khil, P. P., and R. D. Camerini-Otero. 2002. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44:89-105.
-
(2002)
Mol. Microbiol
, vol.44
, pp. 89-105
-
-
Khil, P.P.1
Camerini-Otero, R.D.2
-
20
-
-
34247625583
-
Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida
-
Koorits, L., R. Tegova, M. Tark, K. Tarassova, A. Tover, and M. Kivisaar. 2007. Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida. DNA Repair 6:863-868.
-
(2007)
DNA Repair
, vol.6
, pp. 863-868
-
-
Koorits, L.1
Tegova, R.2
Tark, M.3
Tarassova, K.4
Tover, A.5
Kivisaar, M.6
-
21
-
-
0025810994
-
Mechanism of specific LexA cleavage: Autodigestion and the role of RecA coprotease
-
Little, J. W. 1991. Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease. Biochimie 73:411-421.
-
(1991)
Biochimie
, vol.73
, pp. 411-421
-
-
Little, J.W.1
-
22
-
-
9144266449
-
Reconstruction of the evolutionary history of the LexA-binding sequence
-
Mazon, G., I. Erill, S. Campoy, P. Cortes, E. Forano, and J. Barbe. 2004. Reconstruction of the evolutionary history of the LexA-binding sequence. Microbiology 150:3783-3795.
-
(2004)
Microbiology
, vol.150
, pp. 3783-3795
-
-
Mazon, G.1
Erill, I.2
Campoy, S.3
Cortes, P.4
Forano, E.5
Barbe, J.6
-
23
-
-
0025059622
-
LexA-independent expression of a mutant mucAB operon
-
McNally, K. P., N. E. Freitag, and G. C. Walker. 1990. LexA-independent expression of a mutant mucAB operon. J. Bacteriol. 172:6223-6231.
-
(1990)
J. Bacteriol
, vol.172
, pp. 6223-6231
-
-
McNally, K.P.1
Freitag, N.E.2
Walker, G.C.3
-
25
-
-
0036933705
-
-
Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, D. E. Fouts, S. R. Gill, M. Pop, M. Holmes, L. Brinkac, M. Beanan, R. T. DeBoy, S. Daugherty, J. Kolonay, R. Madupu, W. Nelson, O. White, J. Peterson, H. Khouri, I. Hance, P. Chris Lee, E. Holtzapple, D. Scanlan, K. Tran, A. Moazzez, T. Utterback, M. Rizzo, K. Lee, D. Kosack, D. Moestl, H. Wedler, J. Lauber, D. Stjepandic, J. Hoheisel, M. Straetz, S. Heim, C. Kiewitz, J. A. Eisen, K. N. Timmis, A. Dusterhoft, B. Tummler, and C. M. Fraser. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:799-808.
-
Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, D. E. Fouts, S. R. Gill, M. Pop, M. Holmes, L. Brinkac, M. Beanan, R. T. DeBoy, S. Daugherty, J. Kolonay, R. Madupu, W. Nelson, O. White, J. Peterson, H. Khouri, I. Hance, P. Chris Lee, E. Holtzapple, D. Scanlan, K. Tran, A. Moazzez, T. Utterback, M. Rizzo, K. Lee, D. Kosack, D. Moestl, H. Wedler, J. Lauber, D. Stjepandic, J. Hoheisel, M. Straetz, S. Heim, C. Kiewitz, J. A. Eisen, K. N. Timmis, A. Dusterhoft, B. Tummler, and C. M. Fraser. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:799-808.
-
-
-
-
26
-
-
0029018329
-
Two recA genes in Myxococcus xanthus
-
Norioka, N., M. Y. Hsu, S. Inouye, and M. Inouye. 1995. Two recA genes in Myxococcus xanthus. J. Bacteriol. 177:4179-4182.
-
(1995)
J. Bacteriol
, vol.177
, pp. 4179-4182
-
-
Norioka, N.1
Hsu, M.Y.2
Inouye, S.3
Inouye, M.4
-
27
-
-
0024333340
-
Consensus methods for finding and ranking DNA binding sites. Application to Escherichia coli promoters
-
O'Neill, M. C. 1989. Consensus methods for finding and ranking DNA binding sites. Application to Escherichia coli promoters. J. Mol. Biol. 207: 301-310.
-
(1989)
J. Mol. Biol
, vol.207
, pp. 301-310
-
-
O'Neill, M.C.1
-
28
-
-
0032168533
-
A general procedure for locating and analyzing protein-binding sequence motifs in nucleic acids
-
O'Neill, M. C. 1998. A general procedure for locating and analyzing protein-binding sequence motifs in nucleic acids. Proc. Natl. Acad. Sci. USA 95: 10710-10715.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 10710-10715
-
-
O'Neill, M.C.1
-
29
-
-
33751534830
-
The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting
-
Reppas, N. B., J. T. Wade, G. M. Church, and K. Struhl. 2006. The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. Mol. Cell 24:747-757.
-
(2006)
Mol. Cell
, vol.24
, pp. 747-757
-
-
Reppas, N.B.1
Wade, J.T.2
Church, G.M.3
Struhl, K.4
-
30
-
-
0036678794
-
Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics
-
Ronen, M., R. Rosenberg, B. I. Shraiman, and U. Alon. 2002. Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proc. Natl. Acad. Sci. USA 99:10555-10560.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 10555-10560
-
-
Ronen, M.1
Rosenberg, R.2
Shraiman, B.I.3
Alon, U.4
-
31
-
-
0024618479
-
Mutation of the promoter and LexA binding sites of cea, the gene encoding colicin E1
-
Salles, B., and G. M. Weinstock. 1989. Mutation of the promoter and LexA binding sites of cea, the gene encoding colicin E1. Mol. Gen. Genet. 215: 483-489.
-
(1989)
Mol. Gen. Genet
, vol.215
, pp. 483-489
-
-
Salles, B.1
Weinstock, G.M.2
-
33
-
-
0025361131
-
Nature of the SOS-inducing signal in Escherichia coli. The involvement of DNA replication
-
Sassanfar, M., and J. W. Roberts. 1990. Nature of the SOS-inducing signal in Escherichia coli. The involvement of DNA replication. J. Mol. Biol. 212: 79-96.
-
(1990)
J. Mol. Biol
, vol.212
, pp. 79-96
-
-
Sassanfar, M.1
Roberts, J.W.2
-
34
-
-
0020490588
-
Cleavage of the lambda and P22 repressors by recA protein
-
Sauer, R. T., M. J. Ross, and M. Ptashne. 1982. Cleavage of the lambda and P22 repressors by recA protein. J. Biol. Chem. 257:4458-4462.
-
(1982)
J. Biol. Chem
, vol.257
, pp. 4458-4462
-
-
Sauer, R.T.1
Ross, M.J.2
Ptashne, M.3
-
35
-
-
0023042012
-
Information content of binding sites on nucleotide sequences
-
Schneider, T. D., G. D. Stormo, L. Gold, and A. Ehrenfeucht. 1986. Information content of binding sites on nucleotide sequences. J. Mol. Biol. 188: 415-431.
-
(1986)
J. Mol. Biol
, vol.188
, pp. 415-431
-
-
Schneider, T.D.1
Stormo, G.D.2
Gold, L.3
Ehrenfeucht, A.4
-
36
-
-
0032489468
-
The Tum protein of coliphage 186 is an antirepressor
-
Shearwin, K. E., A. M. Brumby, and J. B. Egan. 1998. The Tum protein of coliphage 186 is an antirepressor. J. Biol. Chem. 273:5708-5715.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 5708-5715
-
-
Shearwin, K.E.1
Brumby, A.M.2
Egan, J.B.3
-
37
-
-
4544341015
-
-
Smyth, G. K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol 3:Article 3.
-
Smyth, G. K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol 3:Article 3.
-
-
-
-
38
-
-
0021320685
-
Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli
-
Walker, G. C. 1984. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol. Rev. 48:60-93.
-
(1984)
Microbiol. Rev
, vol.48
, pp. 60-93
-
-
Walker, G.C.1
-
39
-
-
0036937356
-
Global features of the Pseudomonas putida KT2440 genome sequence
-
Weinel, C., K. E. Nelson, and B. Tummler. 2002. Global features of the Pseudomonas putida KT2440 genome sequence. Environ. Microbiol. 4:809-818.
-
(2002)
Environ. Microbiol
, vol.4
, pp. 809-818
-
-
Weinel, C.1
Nelson, K.E.2
Tummler, B.3
-
40
-
-
0031943348
-
The Bacillus subtilis DinR binding site: Redefinition of the consensus sequence
-
Winterling, K. W., D. Chafin, J. J. Hayes, J. Sun, A. S. Levine, R. E. Yasbin, and R. Woodgate. 1998. The Bacillus subtilis DinR binding site: redefinition of the consensus sequence. J. Bacteriol. 180:2201- 2211.
-
(1998)
J. Bacteriol
, vol.180
, pp. 2201-2211
-
-
Winterling, K.W.1
Chafin, D.2
Hayes, J.J.3
Sun, J.4
Levine, A.S.5
Yasbin, R.E.6
Woodgate, R.7
-
41
-
-
0036454122
-
Characterization of Xan thomonas axonopodis pv. citri LexA: Recognition of the LexA binding site
-
Yang, M. K., Y. C. Yang, and C. H. Hsu. 2002. Characterization of Xan thomonas axonopodis pv. citri LexA: recognition of the LexA binding site. Mol. Genet. Genomics 268:477-487.
-
(2002)
Mol. Genet. Genomics
, vol.268
, pp. 477-487
-
-
Yang, M.K.1
Yang, Y.C.2
Hsu, C.H.3
-
42
-
-
33644952730
-
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray
-
Yuste, L., A. B. Hervas, I. Canosa, R. Tobes, J. I. Jimenez, J. Nogales, M. M. Perez-Perez, E. Santero, E. Diaz, J. L. Ramos, V. de Lorenzo, and F. Rojo. 2006. Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ. Microbiol. 8:165-177.
-
(2006)
Environ. Microbiol
, vol.8
, pp. 165-177
-
-
Yuste, L.1
Hervas, A.B.2
Canosa, I.3
Tobes, R.4
Jimenez, J.I.5
Nogales, J.6
Perez-Perez, M.M.7
Santero, E.8
Diaz, E.9
Ramos, J.L.10
de Lorenzo, V.11
Rojo, F.12
|