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Volumn 189, Issue 24, 2007, Pages 8855-8862

Cohabitation of two different lexA regulons in Pseudomonas putida

Author keywords

[No Author keywords available]

Indexed keywords

LEXA PROTEIN;

EID: 37449019352     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01213-07     Document Type: Article
Times cited : (31)

References (42)
  • 1
    • 4744339390 scopus 로고    scopus 로고
    • Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum
    • Abella, M., I. Erill, M. Jara, G. Mazon, S. Campoy, and J. Barbe. 2004. Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum. Mol. Microbiol. 54:212-222.
    • (2004) Mol. Microbiol , vol.54 , pp. 212-222
    • Abella, M.1    Erill, I.2    Jara, M.3    Mazon, G.4    Campoy, S.5    Barbe, J.6
  • 3
    • 0023147228 scopus 로고
    • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
    • Berg, O. G., and P. H. von Hippel. 1987. Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 193:723-750.
    • (1987) J. Mol. Biol , vol.193 , pp. 723-750
    • Berg, O.G.1    von Hippel, P.H.2
  • 4
    • 0036843636 scopus 로고    scopus 로고
    • Phenotypes of lexA mutations in Salmonella enterica: Evidence for a lethal lexA null phenotype due to the Fels-2 prophage
    • Bunny, K., J. Liu, and J. Roth. 2002. Phenotypes of lexA mutations in Salmonella enterica: evidence for a lethal lexA null phenotype due to the Fels-2 prophage. J. Bacteriol. 184:6235-6249.
    • (2002) J. Bacteriol , vol.184 , pp. 6235-6249
    • Bunny, K.1    Liu, J.2    Roth, J.3
  • 5
    • 0041663983 scopus 로고    scopus 로고
    • LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus
    • Campoy, S., M. Fontes, S. Padmanabhan, P. Cortes, M. Llagostera, and J. Barbe. 2003. LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus. Mol. Microbiol. 49:769-781.
    • (2003) Mol. Microbiol , vol.49 , pp. 769-781
    • Campoy, S.1    Fontes, M.2    Padmanabhan, S.3    Cortes, P.4    Llagostera, M.5    Barbe, J.6
  • 6
    • 0036855349 scopus 로고    scopus 로고
    • A new regulatory DNA motif of the gamma subclass Proteobacteria: Identification of the LexA protein binding site of the plant pathogen Xylella fastidiosa
    • Campoy, S., G. Mazon, A. R. Fernandez de Henestrosa, M. Llagostera, P. B. Monteiro, and J. Barbe. 2002. A new regulatory DNA motif of the gamma subclass Proteobacteria: identification of the LexA protein binding site of the plant pathogen Xylella fastidiosa. Microbiology 148:3583-3597.
    • (2002) Microbiology , vol.148 , pp. 3583-3597
    • Campoy, S.1    Mazon, G.2    Fernandez de Henestrosa, A.R.3    Llagostera, M.4    Monteiro, P.B.5    Barbe, J.6
  • 7
    • 22544483228 scopus 로고    scopus 로고
    • Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus
    • Campoy, S., N. Salvador, P. Cortes, I. Erill, and J. Barbe. 2005. Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus. J. Bacteriol. 187:5367-5375.
    • (2005) J. Bacteriol , vol.187 , pp. 5367-5375
    • Campoy, S.1    Salvador, N.2    Cortes, P.3    Erill, I.4    Barbe, J.5
  • 9
    • 33749585217 scopus 로고    scopus 로고
    • Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin
    • Cirz, R. T., B. M. O'Neill, J. A. Hammond, S. R. Head, and F. E. Romesberg. 2006. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. J. Bacteriol. 188:7101-7110.
    • (2006) J. Bacteriol , vol.188 , pp. 7101-7110
    • Cirz, R.T.1    O'Neill, B.M.2    Hammond, J.A.3    Head, S.R.4    Romesberg, F.E.5
  • 10
    • 0035023305 scopus 로고    scopus 로고
    • Comparative gene expression profiles following UV exposure in wildtype and SOS-deficient Escherichia coli
    • Courcelle, J., A. Khodursky, B. Peter, P. O. Brown, and P. C. Hanawalt. 2001. Comparative gene expression profiles following UV exposure in wildtype and SOS-deficient Escherichia coli. Genetics 158:41-64.
    • (2001) Genetics , vol.158 , pp. 41-64
    • Courcelle, J.1    Khodursky, A.2    Peter, B.3    Brown, P.O.4    Hanawalt, P.C.5
  • 11
    • 23644432557 scopus 로고    scopus 로고
    • The Leptospira interrogans lexA gene is not autoregulated
    • Cune, J., P. Cullen, G. Mazon, S. Campoy, B. Adler, and J. Barbe. 2005. The Leptospira interrogans lexA gene is not autoregulated. J. Bacteriol. 187:5841-5845.
    • (2005) J. Bacteriol , vol.187 , pp. 5841-5845
    • Cune, J.1    Cullen, P.2    Mazon, G.3    Campoy, S.4    Adler, B.5    Barbe, J.6
  • 12
    • 35449007348 scopus 로고    scopus 로고
    • Eons of distress: An evolutionary perspective on the bacterial SOS response
    • Erill, I., S. Campoy, and J. Barbe. 2007. Eons of distress: an evolutionary perspective on the bacterial SOS response. FEMS Microbiol. Rev. 28:813-828.
    • (2007) FEMS Microbiol. Rev , vol.28 , pp. 813-828
    • Erill, I.1    Campoy, S.2    Barbe, J.3
  • 13
    • 31544453298 scopus 로고    scopus 로고
    • Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain
    • Erill, I., S. Campoy, G. Mazon, and J. Barbe. 2006. Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain. Nucleic Acids Res. 34:66-77.
    • (2006) Nucleic Acids Res , vol.34 , pp. 66-77
    • Erill, I.1    Campoy, S.2    Mazon, G.3    Barbe, J.4
  • 14
    • 0344464768 scopus 로고    scopus 로고
    • In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon
    • Erill, I., M. Escribano, S. Campoy, and J. Barbe. 2003. In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. Bioinformatics 19:2225-2236.
    • (2003) Bioinformatics , vol.19 , pp. 2225-2236
    • Erill, I.1    Escribano, M.2    Campoy, S.3    Barbe, J.4
  • 17
    • 19444386290 scopus 로고    scopus 로고
    • An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus
    • Galhardo, R. S., R. P. Rocha, M. V. Marques, and C. F. Menck. 2005. An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus. Nucleic Acids Res. 33:2603-2614.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2603-2614
    • Galhardo, R.S.1    Rocha, R.P.2    Marques, M.V.3    Menck, C.F.4
  • 18
    • 0345269755 scopus 로고    scopus 로고
    • Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: Differing responses of lexA and recA to DNA damage
    • Jara, M., C. Nunez, S. Campoy, A. R. Fernandez de Henestrosa, D. R. Lovley, and J. Barbe. 2003. Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage. J. Bacteriol. 185:2493-2502.
    • (2003) J. Bacteriol , vol.185 , pp. 2493-2502
    • Jara, M.1    Nunez, C.2    Campoy, S.3    Fernandez de Henestrosa, A.R.4    Lovley, D.R.5    Barbe, J.6
  • 19
    • 0036224939 scopus 로고    scopus 로고
    • Over 1000 genes are involved in the DNA damage response of Escherichia coli
    • Khil, P. P., and R. D. Camerini-Otero. 2002. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44:89-105.
    • (2002) Mol. Microbiol , vol.44 , pp. 89-105
    • Khil, P.P.1    Camerini-Otero, R.D.2
  • 20
    • 34247625583 scopus 로고    scopus 로고
    • Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida
    • Koorits, L., R. Tegova, M. Tark, K. Tarassova, A. Tover, and M. Kivisaar. 2007. Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida. DNA Repair 6:863-868.
    • (2007) DNA Repair , vol.6 , pp. 863-868
    • Koorits, L.1    Tegova, R.2    Tark, M.3    Tarassova, K.4    Tover, A.5    Kivisaar, M.6
  • 21
    • 0025810994 scopus 로고
    • Mechanism of specific LexA cleavage: Autodigestion and the role of RecA coprotease
    • Little, J. W. 1991. Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease. Biochimie 73:411-421.
    • (1991) Biochimie , vol.73 , pp. 411-421
    • Little, J.W.1
  • 22
    • 9144266449 scopus 로고    scopus 로고
    • Reconstruction of the evolutionary history of the LexA-binding sequence
    • Mazon, G., I. Erill, S. Campoy, P. Cortes, E. Forano, and J. Barbe. 2004. Reconstruction of the evolutionary history of the LexA-binding sequence. Microbiology 150:3783-3795.
    • (2004) Microbiology , vol.150 , pp. 3783-3795
    • Mazon, G.1    Erill, I.2    Campoy, S.3    Cortes, P.4    Forano, E.5    Barbe, J.6
  • 23
    • 0025059622 scopus 로고
    • LexA-independent expression of a mutant mucAB operon
    • McNally, K. P., N. E. Freitag, and G. C. Walker. 1990. LexA-independent expression of a mutant mucAB operon. J. Bacteriol. 172:6223-6231.
    • (1990) J. Bacteriol , vol.172 , pp. 6223-6231
    • McNally, K.P.1    Freitag, N.E.2    Walker, G.C.3
  • 25
    • 0036933705 scopus 로고    scopus 로고
    • Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, D. E. Fouts, S. R. Gill, M. Pop, M. Holmes, L. Brinkac, M. Beanan, R. T. DeBoy, S. Daugherty, J. Kolonay, R. Madupu, W. Nelson, O. White, J. Peterson, H. Khouri, I. Hance, P. Chris Lee, E. Holtzapple, D. Scanlan, K. Tran, A. Moazzez, T. Utterback, M. Rizzo, K. Lee, D. Kosack, D. Moestl, H. Wedler, J. Lauber, D. Stjepandic, J. Hoheisel, M. Straetz, S. Heim, C. Kiewitz, J. A. Eisen, K. N. Timmis, A. Dusterhoft, B. Tummler, and C. M. Fraser. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:799-808.
    • Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, D. E. Fouts, S. R. Gill, M. Pop, M. Holmes, L. Brinkac, M. Beanan, R. T. DeBoy, S. Daugherty, J. Kolonay, R. Madupu, W. Nelson, O. White, J. Peterson, H. Khouri, I. Hance, P. Chris Lee, E. Holtzapple, D. Scanlan, K. Tran, A. Moazzez, T. Utterback, M. Rizzo, K. Lee, D. Kosack, D. Moestl, H. Wedler, J. Lauber, D. Stjepandic, J. Hoheisel, M. Straetz, S. Heim, C. Kiewitz, J. A. Eisen, K. N. Timmis, A. Dusterhoft, B. Tummler, and C. M. Fraser. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:799-808.
  • 27
    • 0024333340 scopus 로고
    • Consensus methods for finding and ranking DNA binding sites. Application to Escherichia coli promoters
    • O'Neill, M. C. 1989. Consensus methods for finding and ranking DNA binding sites. Application to Escherichia coli promoters. J. Mol. Biol. 207: 301-310.
    • (1989) J. Mol. Biol , vol.207 , pp. 301-310
    • O'Neill, M.C.1
  • 28
    • 0032168533 scopus 로고    scopus 로고
    • A general procedure for locating and analyzing protein-binding sequence motifs in nucleic acids
    • O'Neill, M. C. 1998. A general procedure for locating and analyzing protein-binding sequence motifs in nucleic acids. Proc. Natl. Acad. Sci. USA 95: 10710-10715.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 10710-10715
    • O'Neill, M.C.1
  • 29
    • 33751534830 scopus 로고    scopus 로고
    • The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting
    • Reppas, N. B., J. T. Wade, G. M. Church, and K. Struhl. 2006. The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. Mol. Cell 24:747-757.
    • (2006) Mol. Cell , vol.24 , pp. 747-757
    • Reppas, N.B.1    Wade, J.T.2    Church, G.M.3    Struhl, K.4
  • 30
    • 0036678794 scopus 로고    scopus 로고
    • Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics
    • Ronen, M., R. Rosenberg, B. I. Shraiman, and U. Alon. 2002. Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proc. Natl. Acad. Sci. USA 99:10555-10560.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 10555-10560
    • Ronen, M.1    Rosenberg, R.2    Shraiman, B.I.3    Alon, U.4
  • 31
    • 0024618479 scopus 로고
    • Mutation of the promoter and LexA binding sites of cea, the gene encoding colicin E1
    • Salles, B., and G. M. Weinstock. 1989. Mutation of the promoter and LexA binding sites of cea, the gene encoding colicin E1. Mol. Gen. Genet. 215: 483-489.
    • (1989) Mol. Gen. Genet , vol.215 , pp. 483-489
    • Salles, B.1    Weinstock, G.M.2
  • 33
    • 0025361131 scopus 로고
    • Nature of the SOS-inducing signal in Escherichia coli. The involvement of DNA replication
    • Sassanfar, M., and J. W. Roberts. 1990. Nature of the SOS-inducing signal in Escherichia coli. The involvement of DNA replication. J. Mol. Biol. 212: 79-96.
    • (1990) J. Mol. Biol , vol.212 , pp. 79-96
    • Sassanfar, M.1    Roberts, J.W.2
  • 34
    • 0020490588 scopus 로고
    • Cleavage of the lambda and P22 repressors by recA protein
    • Sauer, R. T., M. J. Ross, and M. Ptashne. 1982. Cleavage of the lambda and P22 repressors by recA protein. J. Biol. Chem. 257:4458-4462.
    • (1982) J. Biol. Chem , vol.257 , pp. 4458-4462
    • Sauer, R.T.1    Ross, M.J.2    Ptashne, M.3
  • 35
    • 0023042012 scopus 로고
    • Information content of binding sites on nucleotide sequences
    • Schneider, T. D., G. D. Stormo, L. Gold, and A. Ehrenfeucht. 1986. Information content of binding sites on nucleotide sequences. J. Mol. Biol. 188: 415-431.
    • (1986) J. Mol. Biol , vol.188 , pp. 415-431
    • Schneider, T.D.1    Stormo, G.D.2    Gold, L.3    Ehrenfeucht, A.4
  • 36
    • 0032489468 scopus 로고    scopus 로고
    • The Tum protein of coliphage 186 is an antirepressor
    • Shearwin, K. E., A. M. Brumby, and J. B. Egan. 1998. The Tum protein of coliphage 186 is an antirepressor. J. Biol. Chem. 273:5708-5715.
    • (1998) J. Biol. Chem , vol.273 , pp. 5708-5715
    • Shearwin, K.E.1    Brumby, A.M.2    Egan, J.B.3
  • 37
    • 4544341015 scopus 로고    scopus 로고
    • Smyth, G. K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol 3:Article 3.
    • Smyth, G. K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol 3:Article 3.
  • 38
    • 0021320685 scopus 로고
    • Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli
    • Walker, G. C. 1984. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol. Rev. 48:60-93.
    • (1984) Microbiol. Rev , vol.48 , pp. 60-93
    • Walker, G.C.1
  • 39
    • 0036937356 scopus 로고    scopus 로고
    • Global features of the Pseudomonas putida KT2440 genome sequence
    • Weinel, C., K. E. Nelson, and B. Tummler. 2002. Global features of the Pseudomonas putida KT2440 genome sequence. Environ. Microbiol. 4:809-818.
    • (2002) Environ. Microbiol , vol.4 , pp. 809-818
    • Weinel, C.1    Nelson, K.E.2    Tummler, B.3
  • 41
    • 0036454122 scopus 로고    scopus 로고
    • Characterization of Xan thomonas axonopodis pv. citri LexA: Recognition of the LexA binding site
    • Yang, M. K., Y. C. Yang, and C. H. Hsu. 2002. Characterization of Xan thomonas axonopodis pv. citri LexA: recognition of the LexA binding site. Mol. Genet. Genomics 268:477-487.
    • (2002) Mol. Genet. Genomics , vol.268 , pp. 477-487
    • Yang, M.K.1    Yang, Y.C.2    Hsu, C.H.3


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