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Volumn 5, Issue 6, 2007, Pages 1095-1103

Network-centered view of coronary artery disease

Author keywords

Biologic networks; Coronary artery disease; Genomics; Proteomics; Systems biology

Indexed keywords

ABC TRANSPORTER; CD36 ANTIGEN; DNA; HIGH DENSITY LIPOPROTEIN CHOLESTEROL; INSULIN; TRANSCRIPTION FACTOR; TRIACYLGLYCEROL; WNT PROTEIN;

EID: 37349113383     PISSN: 14779072     EISSN: 17448344     Source Type: Journal    
DOI: 10.1586/14779072.5.6.1095     Document Type: Review
Times cited : (2)

References (43)
  • 1
    • 34250010480 scopus 로고    scopus 로고
    • A common variant on chromosome 9p21 affects the risk of myocardial infarction
    • Helgadottir A, Thorleifsson G, Manolescu A et al. A common variant on chromosome 9p21 affects the risk of myocardial infarction. Science 316(5830), 1491-1493 (2007).
    • (2007) Science , vol.316 , Issue.5830 , pp. 1491-1493
    • Helgadottir, A.1    Thorleifsson, G.2    Manolescu, A.3
  • 2
    • 34249996115 scopus 로고    scopus 로고
    • A common allele on chromosome 9 associated with coronary heart disease
    • McPherson R, Pertsemlidis A, Kavastar N et al. A common allele on chromosome 9 associated with coronary heart disease. Science 316(5830), 1488-1491 (2007).
    • (2007) Science , vol.316 , Issue.5830 , pp. 1488-1491
    • McPherson, R.1    Pertsemlidis, A.2    Kavastar, N.3
  • 3
    • 33745199150 scopus 로고    scopus 로고
    • Integrating genetic and gene expression data: Application to cardiovascular and metabolic traits in mice
    • Drake TA, Schadt EE, Lusis AJ. Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice. Mamm. Genome 17 (6), 466-479 (2006).
    • (2006) Mamm. Genome , vol.17 , Issue.6 , pp. 466-479
    • Drake, T.A.1    Schadt, E.E.2    Lusis, A.J.3
  • 4
    • 22244454728 scopus 로고    scopus 로고
    • Thematic review series: The pathogenesis of atherosclerosis. Toward a biological network for atherosclerosis
    • Ghazalpour A, Doss S, Yang X et al. Thematic review series: the pathogenesis of atherosclerosis. Toward a biological network for atherosclerosis. J. Lipid Res. 45(10), 1793-1805 (2004).
    • (2004) J. Lipid Res , vol.45 , Issue.10 , pp. 1793-1805
    • Ghazalpour, A.1    Doss, S.2    Yang, X.3
  • 5
    • 33845585832 scopus 로고    scopus 로고
    • Systems biology approaches to metabolic and cardiovascular disorders: Network perspectives of cardiovascular metabolism
    • Weiss JN, Yang L, Qu Z. Systems biology approaches to metabolic and cardiovascular disorders: network perspectives of cardiovascular metabolism. J. Lipid Res. 47(11), 2355-2366 (2006).
    • (2006) J. Lipid Res , vol.47 , Issue.11 , pp. 2355-2366
    • Weiss, J.N.1    Yang, L.2    Qu, Z.3
  • 6
    • 0141730248 scopus 로고    scopus 로고
    • The metabolic syndrome: More than the sum of its parts?
    • Reilly MP, Rader DJ. The metabolic syndrome: more than the sum of its parts? Circulation 108(13), 1546-1551 (2003).
    • (2003) Circulation , vol.108 , Issue.13 , pp. 1546-1551
    • Reilly, M.P.1    Rader, D.J.2
  • 7
    • 0032958470 scopus 로고    scopus 로고
    • Identification of Cd36 (Fat) as an insulin-resistance gene causing defective fatty acid and glucose metabolism in hypertensive rats
    • Aitman TJ, Glazier AM, Wallace CA et al. Identification of Cd36 (Fat) as an insulin-resistance gene causing defective fatty acid and glucose metabolism in hypertensive rats. Nat. Genet. 21(1), 76-83 (1999).
    • (1999) Nat. Genet , vol.21 , Issue.1 , pp. 76-83
    • Aitman, T.J.1    Glazier, A.M.2    Wallace, C.A.3
  • 8
    • 0034598746 scopus 로고    scopus 로고
    • Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    • Alizadeh AA, Eisen MB, Davis RE et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403(6769), 503-511 (2000).
    • (2000) Nature , vol.403 , Issue.6769 , pp. 503-511
    • Alizadeh, A.A.1    Eisen, M.B.2    Davis, R.E.3
  • 9
    • 0038054341 scopus 로고    scopus 로고
    • PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
    • Mootha VK, Lindgren CM, Eriksson KF et al. PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat. Genet. 34(3), 267-273 (2003).
    • (2003) Nat. Genet , vol.34 , Issue.3 , pp. 267-273
    • Mootha, V.K.1    Lindgren, C.M.2    Eriksson, K.F.3
  • 10
    • 27844486634 scopus 로고    scopus 로고
    • Genomic analysis of metabolic pathway gene expression in mice
    • Ghazalpour A, Doss S, Sheth SS et al. Genomic analysis of metabolic pathway gene expression in mice. Genome Biol. 6(7), R59 (2005).
    • (2005) Genome Biol , vol.6 , Issue.7
    • Ghazalpour, A.1    Doss, S.2    Sheth, S.S.3
  • 11
    • 33750204290 scopus 로고    scopus 로고
    • Genetics of global gene expression
    • Rockman MV, Kruglyak L. Genetics of global gene expression. Nat. Rev. Genet. 7(11), 862-872 (2006).
    • (2006) Nat. Rev. Genet , vol.7 , Issue.11 , pp. 862-872
    • Rockman, M.V.1    Kruglyak, L.2
  • 12
    • 34248390171 scopus 로고    scopus 로고
    • Identification of Abcc6 as the major causal gene for dystrophic cardiac calcification in mice through integrative genomics
    • Meng H, Vera I, Che N et al. Identification of Abcc6 as the major causal gene for dystrophic cardiac calcification in mice through integrative genomics. Proc. Natl Acad. Sci. USA 104(11), 4530-4535 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , Issue.11 , pp. 4530-4535
    • Meng, H.1    Vera, I.2    Che, N.3
  • 13
    • 22844446947 scopus 로고    scopus 로고
    • An integrative genomics approach to infer causal associations between gene expression and disease
    • Schadt EE, Lamb J, Yang X et al. An integrative genomics approach to infer causal associations between gene expression and disease. Nat. Genet. 37(7), 710-717 (2005).
    • (2005) Nat. Genet , vol.37 , Issue.7 , pp. 710-717
    • Schadt, E.E.1    Lamb, J.2    Yang, X.3
  • 14
    • 0035826155 scopus 로고    scopus 로고
    • Exploring complex networks
    • Strogatz SH. Exploring complex networks. Nature, 410(6825), 268-276 (2001).
    • (2001) Nature , vol.410 , Issue.6825 , pp. 268-276
    • Strogatz, S.H.1
  • 15
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5(2), 101-113 (2004).
    • (2004) Nat. Rev. Genet , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 16
    • 33750221963 scopus 로고    scopus 로고
    • The unfolded protein response is an important regulator of inflammatory genes in endothelial cells
    • Gargalovic PS, Gharavi NM, Clark MJ et al. The unfolded protein response is an important regulator of inflammatory genes in endothelial cells. Arterioscler. Thromb. Vasc. Biol. 26(11), 2490-2496 (2006).
    • (2006) Arterioscler. Thromb. Vasc. Biol , vol.26 , Issue.11 , pp. 2490-2496
    • Gargalovic, P.S.1    Gharavi, N.M.2    Clark, M.J.3
  • 17
    • 33748048164 scopus 로고    scopus 로고
    • Identification of inflammatory gene modules based on variations of human endothellal cell responses to oxidized lipids
    • Gargalovic PS, Imura M, Zhang B et al. Identification of inflammatory gene modules based on variations of human endothellal cell responses to oxidized lipids. Proc. Natl Acad. Sci. USA 103(34), 12741-12746 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , Issue.34 , pp. 12741-12746
    • Gargalovic, P.S.1    Imura, M.2    Zhang, B.3
  • 18
    • 0037423295 scopus 로고    scopus 로고
    • Scale-free networks are ultrasmall
    • Cohen R, Havlin S. Scale-free networks are ultrasmall. Phys. Rev. Lett. 90(5), 058701 (2003).
    • (2003) Phys. Rev. Lett , vol.90 , Issue.5 , pp. 058701
    • Cohen, R.1    Havlin, S.2
  • 19
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi AL, Albert R. Emergence of scaling in random networks. Science 286(5439), 509-512 (1999).
    • (1999) Science , vol.286 , Issue.5439 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 20
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. The large-scale organization of metabolic networks. Nature 407 (6804), 651-654 (2000).
    • (2000) Nature , vol.407 , Issue.6804 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.N.4    Barabasi, A.L.5
  • 21
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong H, Mason SP, Barabasi AL, Oltvai ZN. Lethality and centrality in protein networks. Nature 411(6833), 41-42 (2001).
    • (2001) Nature , vol.411 , Issue.6833 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabasi, A.L.3    Oltvai, Z.N.4
  • 22
    • 23944458138 scopus 로고    scopus 로고
    • Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat. Appl. Genet. Mol. Biol. 4, (2005) (Article 17).
    • Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat. Appl. Genet. Mol. Biol. 4, (2005) (Article 17).
  • 23
    • 31144436747 scopus 로고    scopus 로고
    • The human connectome: A structural description of the human brain
    • Sporns O, Tononi G, Kotter R. The human connectome: a structural description of the human brain. PLoS Comput. Biol. 1(4), e42 (2005).
    • (2005) PLoS Comput. Biol , vol.1 , Issue.4
    • Sporns, O.1    Tononi, G.2    Kotter, R.3
  • 24
    • 0032539567 scopus 로고    scopus 로고
    • Subcellular metabolic transients and mitochondrial redox waves in heart cells
    • Romashko DN, Marban E, O'Rourke B. Subcellular metabolic transients and mitochondrial redox waves in heart cells. Proc. Natl Acad. Sci. USA 95(4), 1618-1623 (1998).
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , Issue.4 , pp. 1618-1623
    • Romashko, D.N.1    Marban, E.2    O'Rourke, B.3
  • 25
    • 0035936798 scopus 로고    scopus 로고
    • Molecular and cellular mechanisms of cardiac arrhythmias
    • Keating MT, Sanguinetti MC. Molecular and cellular mechanisms of cardiac arrhythmias. Cell 104 (4), 569-580 (2001).
    • (2001) Cell , vol.104 , Issue.4 , pp. 569-580
    • Keating, M.T.1    Sanguinetti, M.C.2
  • 26
    • 0242582202 scopus 로고    scopus 로고
    • Synchronized whole cell oscillations in mitochondrial metabolism triggered by a local release of reactive oxygen species in cardiac myocytes
    • Aon MA, Cortassa S, Marban E, O'Rourke B. Synchronized whole cell oscillations in mitochondrial metabolism triggered by a local release of reactive oxygen species in cardiac myocytes. J. Biol. Chem. 278(45), 44735-44744 (2003).
    • (2003) J. Biol. Chem , vol.278 , Issue.45 , pp. 44735-44744
    • Aon, M.A.1    Cortassa, S.2    Marban, E.3    O'Rourke, B.4
  • 27
    • 1842428673 scopus 로고    scopus 로고
    • Percolation and criticality in a mitochondrial network
    • Aon MA, Cortassa S, O'Rourke B. Percolation and criticality in a mitochondrial network. Proc. Natl Acad. Sci. USA 101(13), 4447-4452 (2004).
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , Issue.13 , pp. 4447-4452
    • Aon, M.A.1    Cortassa, S.2    O'Rourke, B.3
  • 28
    • 31044442642 scopus 로고    scopus 로고
    • The mitochondrial origin of postischemic arrhythmias
    • Akar FG, Aon MA, Tomaselli GF, O'Rourke B. The mitochondrial origin of postischemic arrhythmias. J. Clin. Invest. 115(12), 3527-3535 (2005).
    • (2005) J. Clin. Invest , vol.115 , Issue.12 , pp. 3527-3535
    • Akar, F.G.1    Aon, M.A.2    Tomaselli, G.F.3    O'Rourke, B.4
  • 29
    • 34249844194 scopus 로고    scopus 로고
    • Remodelling of action potential and intracellular calcium cycling dynamics during subacute myocardial infarction promotes ventricular arrhythmias in Langendorff-perfused rabbit hearts
    • Chou CC, Zhou S, Hayashi H et al. Remodelling of action potential and intracellular calcium cycling dynamics during subacute myocardial infarction promotes ventricular arrhythmias in Langendorff-perfused rabbit hearts. J. Physiol. 580(Pt 3), 895-906 (2007).
    • (2007) J. Physiol , vol.580 , Issue.PART 3 , pp. 895-906
    • Chou, C.C.1    Zhou, S.2    Hayashi, H.3
  • 30
    • 33748358562 scopus 로고    scopus 로고
    • Spatially discordant alternans in cardiac tissue: Role of calcium cycling
    • Sato D, Shiferaw Y, Garfinkel A, Weiss JN, Qu Z, Karma A. Spatially discordant alternans in cardiac tissue: role of calcium cycling. Circ. Res. 99(5), 520-527 (2006).
    • (2006) Circ. Res , vol.99 , Issue.5 , pp. 520-527
    • Sato, D.1    Shiferaw, Y.2    Garfinkel, A.3    Weiss, J.N.4    Qu, Z.5    Karma, A.6
  • 31
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature 422 (6928), 198-207 (2003).
    • (2003) Nature , vol.422 , Issue.6928 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 32
    • 34147121646 scopus 로고    scopus 로고
    • Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
    • Collins SR, Kemmeren P, Zhao XC et al. Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol. Cell. Proteomics 6(3), 439-450 (2007).
    • (2007) Mol. Cell. Proteomics , vol.6 , Issue.3 , pp. 439-450
    • Collins, S.R.1    Kemmeren, P.2    Zhao, X.C.3
  • 33
    • 33846102063 scopus 로고    scopus 로고
    • Thematic review series: Systems biology approaches to metabolic and cardiovascular disorders. Proteomics approaches to the systems biology of cardiovascular diseases
    • Drake TA, Ping P. Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Proteomics approaches to the systems biology of cardiovascular diseases. J. Lipid Res. 48(1), 1-8 (2007).
    • (2007) J. Lipid Res , vol.48 , Issue.1 , pp. 1-8
    • Drake, T.A.1    Ping, P.2
  • 34
    • 33750015062 scopus 로고    scopus 로고
    • Proteome analysis of myocardial tissue following ischemia and reperfusion - effects of complement inhibition
    • Buerke M, Schwertz H, Langin T et al. Proteome analysis of myocardial tissue following ischemia and reperfusion - effects of complement inhibition. Biochim. Biophys. Acta 1764(10), 1536-1545 (2006).
    • (2006) Biochim. Biophys. Acta , vol.1764 , Issue.10 , pp. 1536-1545
    • Buerke, M.1    Schwertz, H.2    Langin, T.3
  • 35
    • 33644555214 scopus 로고    scopus 로고
    • Potential biomarkers for ischemic heart damage identified in mitochondrial proteins by comparative proteomics
    • Kim N, Lee Y, Kim H et al. Potential biomarkers for ischemic heart damage identified in mitochondrial proteins by comparative proteomics. Proteomics 6(4), 1237-1249 (2006).
    • (2006) Proteomics , vol.6 , Issue.4 , pp. 1237-1249
    • Kim, N.1    Lee, Y.2    Kim, H.3
  • 36
    • 33751015099 scopus 로고    scopus 로고
    • Proteomic analysis of hypertrophied myocardial protein patterns in renovascularly hypertensive and spontaneously hypertensive rats
    • Zhou SG, Zhou SF, Huang HQ, Chen JW, Huang M, Liu PQ. Proteomic analysis of hypertrophied myocardial protein patterns in renovascularly hypertensive and spontaneously hypertensive rats. J. Proteome Res. 5(11), 2901-2908 (2006).
    • (2006) J. Proteome Res , vol.5 , Issue.11 , pp. 2901-2908
    • Zhou, S.G.1    Zhou, S.F.2    Huang, H.Q.3    Chen, J.W.4    Huang, M.5    Liu, P.Q.6
  • 37
    • 33645704767 scopus 로고    scopus 로고
    • Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver
    • Forner F, Foster LJ, Campanaro S, Valle G, Mann M. Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver. Mol. Cell. Proteomics 5(4), 608-619 (2006).
    • (2006) Mol. Cell. Proteomics , vol.5 , Issue.4 , pp. 608-619
    • Forner, F.1    Foster, L.J.2    Campanaro, S.3    Valle, G.4    Mann, M.5
  • 39
    • 33847084336 scopus 로고    scopus 로고
    • Tissue heterogeneity of the mammalian mitochondrial proteome
    • Johnson DT, Harris RA, French S et al. Tissue heterogeneity of the mammalian mitochondrial proteome. Am. J. Physiol. Cell. Physiol. 292(2), C689-C697 (2007).
    • (2007) Am. J. Physiol. Cell. Physiol , vol.292 , Issue.2
    • Johnson, D.T.1    Harris, R.A.2    French, S.3
  • 40
    • 33845608482 scopus 로고    scopus 로고
    • Maintenance of the metabolic homeostosis of the heart: Developing a systems analysis approach
    • Balaban RS. Maintenance of the metabolic homeostosis of the heart: developing a systems analysis approach. Ann. NY Acad. Sci. 1080, 140-153 (2006).
    • (2006) Ann. NY Acad. Sci , vol.1080 , pp. 140-153
    • Balaban, R.S.1
  • 41
    • 33644546383 scopus 로고    scopus 로고
    • Mitochondrial matrix phosphoproteome: Effect of extra mitochondrial calcium
    • Hopper RK, Carroll S, Aponte AM et al. Mitochondrial matrix phosphoproteome: effect of extra mitochondrial calcium. Biochemistry 45(8), 2524-2536 (2006).
    • (2006) Biochemistry , vol.45 , Issue.8 , pp. 2524-2536
    • Hopper, R.K.1    Carroll, S.2    Aponte, A.M.3
  • 42
    • 33749335282 scopus 로고    scopus 로고
    • The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
    • Lamb J, Crawford ED, Peck D et al. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 313(5795), 1929-1935 (2006).
    • (2006) Science , vol.313 , Issue.5795 , pp. 1929-1935
    • Lamb, J.1    Crawford, E.D.2    Peck, D.3


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