Development and characterization of 248 novel microsatellite markers in turbot (Scophthalmus maximus)

Genome

Volumn 50, Issue 3, 2007, Pages 329-332

  Pardo, B G ^a   Fernandez C ^a   Hermida, M ^a   Vazquez Lopez A ^a   Perez M ^b   Presa, P ^b   Calaza, M ^c   Alvarez Dios, J A ^c   Comesana A S ^b   Raposo Guillan J ^b   Bouza, C ^a   Martinez P ^a  

^a Facultad de Veterinaria   (Spain)

^b UNIVERSITY OF VIGO   (Spain)

^c UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

Enriched libraries; Microsatellites; Pleuronectiformes; Polymorphism; Scophthalmus maximus

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ARTICLE; CHROMOSOME MAP; COMPUTER PROGRAM; DINUCLEOTIDE REPEAT; EUROPE; FLATFISH; GENE LIBRARY; GENETIC POLYMORPHISM; GENETICS; QUANTITATIVE TRAIT LOCUS;

ANIMALS; CHROMOSOME MAPPING; DINUCLEOTIDE REPEATS; EUROPE; FLATFISHES; GENOMIC LIBRARY; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; QUANTITATIVE TRAIT LOCI; SOFTWARE;

PLEURONECTIFORMES; SCOPHTHALMIDAE; SCOPHTHALMUS MAXIMUS;

EID: 34250329961     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G06-154     Document Type: Article

References (34)

1. Bouza, C., Castro, J., Presa, P., Sánchez, L., and Martínez, P. 2002. Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes. Can. J. Fish. Aquat. Sci. 59: 1460-1473. doi:10.1139/f02-114.
2. Carleton, K.L., Streelman, J.T., Lee, B.Y., Garnhart, N., Kidd, M., and Kocher, T.D. 2002. Rapid isolation of CA microsatellites from the tilapia genome. Anim. Genet. 33: 140-144. doi:10.1046/j.1365-2052.2002.00817.x.
3. Carreras-Carbonell, J., Macpherson, E., and Pascual, M. 2004. Isolation and characterization of microsatellite loci in Tripterygion delaisi. Mol. Ecol. Notes, 4: 438-439. doi:10.1111/j.1471-8286.2004.00688.x.
4. Castro, J., Bouza, C., Sánchez, L., Cal, R.M., Piferrer, F., and Martínez, P. 2003. Gynogenesis assessment by using microsatellite genetic markers in turbot (Scophthalmus maximus). Mar. Biotechnol. 5: 584-592. doi:10.1007/s10126-003-0004-x.
5. Castro, J., Bouza, C., Presa, P., Pino-Querido, A., Riaza, A., Ferreiro, I., Sánchez, L., and Martínez, P. 2004. Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci. Aquaculture, 242: 119-135. doi:10.1016/j. aquaculture.2004.09.010.
6. Cheng, H.H., Levin, I., Vallejo, R.L., Khatib, H., Dodgson, J.B., Crittenden, L.B., and Hillel, J. 1995. Development of a genetic map of the chicken with markers of high utility. Poult. Sci. 74: 1855-1874.
7. Chistiakov, D.A., Hellemans, B., and Volckaert, F.A.M. 2006. Microsatellites and their genomic distribution, evolution, function and applications: A review with special reference to fish genetics. Aquaculture, 255: 1-29. doi:10.1016/j.aquaculture.2005.11.031.
8. Clark, M.S. 2003. Genomics and mapping of Teleostei. Comp. Funct. Genomics, 4: 182-193.
9. Crittenden, L.B., Provencher, L., Levin, I., Abplanalp, H., Briles, R.W., Briles, W.E., and Dodgson, J.B. 1993. Characterization of a red jungle fowl by white leghorn backcross reference population for molecular mapping of the chicken genome. Poult. Sci. 72: 334-348.
10. Danzmann, R.G., and Gharbi, K. 2001. Gene mapping in fishes: a means to an end. Genetica, 111: 3-23. doi:10.1023/A:1013713431255.
11. Dekkers, J.C. 2004. Commercial application of marker- and gene-assisted selection in livestock: strategies and lessons. J. Anim. Sci. 82: E313-E328.
12. García de León, F.J., Canonne, M., Quillet, E., Bonhomme, F., and Chatain, B. 1998. The application of microsatellite markers to breeding programmes in the sea bass, Dicentrarchus labrax. Aquaculture, 159: 303-316. doi:10.1016/S0044-8486(97)00188-9.
13. Garoia, F., Guarniero, I., and Tinti, F. 2003. Polymorphic microsatellites for the Mediterranean angler species (Lophiidae). Mol. Ecol. Notes, 3: 294-296. doi:10.1046/j.1471-8286.2003.00438.x.
14. Gibbs, M., Dawson, D.A., McCamley, C., Wardle, A.F., Armour, J.A., and Burke, T. 1997. Chicken microsatellite markers isolated from libraries enriched for simple tandem repeats. Anim. Genet. 28: 401-417. doi:10.1111/j.1365- 2052.1997.t01-1-00184.x.
15. Gouin, N., Westenberger, S.J., Mahaney, S.M., Lindley, P., Vande-Berg, J.L., and Samollow, P. 2005. Development, inheritance, and linkage-group assignment of 60 novel microsatellite markers for the gray, short-tailed opossum Monodelphis domestica. Genome, 48: 1019-1027. doi:10.1139/g05-059.
16. Iyengar, A., Piyapattanakorn, S., Heipel, D.A., Stone, D.M., Howell, B.R., Child, A.R., and Maclean, N. 2000. A suite of highly polymorphic microsatellite markers in turbot (Scophthalmus maximus) with potential for use across several flatfish species. Mol. Ecol. 9: 365-378.
17. Jarne, P., and Lagoda, P.J.L. 1996. Microsatellites, from molecules to populations and back. Trends Ecol. Evol. 11: 424-428. doi:10.1016/0169-5347(96)10049-5.
18. Kandpal, R.P., Kandpal, G., and Weissman, S.M. 1994. Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers. Proc. Natl. Acad. Sci. U.S.A. 91: 88-92. doi:10.1073/pnas.91.1.88.
19. Lee, W.J., and Kocher, T.D. 1996. Microsatellite DNA markers for genetic mapping in Oreochromis niloticus. J. Fish Biol. 49: 169-171.
20. Liu, Z.J., and Cordes, J.F. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture, 238: 1-37. doi:10.1016/j.aquaculture.2004.05.027.
21. O'Malley, K.G., Abbey, C.A., Ross, K., and Gold, J. 2003. Microsatellite DNA markers for kinship analysis and genetic mapping in red drum, Sciaenops ocellatus (Sciaenidae, Teleostei). Mol. Ecol. 3: 155-158.
22. Paniego, N., Echaide, M., Muñoz, M., Fernández, L., Torales, S., Faccio, P., et al. 2002. Microsatellite isolation and characterization in sunflower (Helianthus annuus L.). Genome, 45: 34-43. doi:10.1139/g01-120.
23. Pardo, B.G., Casas, L., Fortes, G.G., Bouza, C., Martínez, P., Clark, M.S., and Sánchez, L. 2005. New microsatellite markers in turbot (Scophthalmus maximus) derived from an enriched genomic library and sequence databases. Mol. Ecol. Notes, 5:62-64. doi:10.1111/j.1471-8286. 2004.00834.x.
24. Pardo, B.G., Hermida, M., Fernández, C., Bouza, C., Pérez, M., Llavona, A., Sánchez, L., and Martínez, P. 2006. A set of highly polymorphic microsatellites useful for kinship and population analysis. Aquac. Res. 37: 1578-1582. doi:10.1111/j.1365-2109.2006.01600.x.
25. Raymond, M., and Rousset, F. 1995. GENEPOP v. 1.2 [computer program]. Population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249.
26. Rozen, S., and Skaletsky, H.J. 2000. PRIMER3. In Bioinformatics methods and protocols: methods in molecular biology. Edited by S. Krawetz and S. Misener. Humana Press, Totowa, N.J. pp. 365-386. Available from http://frodo.wi.mit.edu/primer3/primer3_code.html.
27. n repetitive sequences from Atlantic salmon, Salmo salar L. Anim. Genet. 24: 195-197.
28. Tang, B., Huang, Y.H., Lin, L., Hu, X.X., Feng, J.D., Yao, P., Zhang, L., and Li, N. 2003. Isolation and characterization of 70 novel microsatellite markers from ostrich (Struthio camelus) genome. Genome, 46: 833-840. doi:10.1139/g03-059.
29. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The CLUSTAL_X windows interface [computer program]: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
30. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Van de Lee, T., Homes, M., et al. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-1414. doi:10.1093/nar/23.21.4407.
31. Weber, J.L. 1990. Informativeness of human (dC-dA)n·(dG-dT)n polymorphisms. Genomics, 7: 524-530. doi:10.1016/0888-7543(90)90195-Z.
32. Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A., and Tingey, S.V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. doi:10.1093/nar/18.22. 6531.
33. Wright, D., Nakamichi, R., Krause, J., and Butlin, R.K. 2006. QTL analysis of behavioral and morphological differentiation between wild and laboratory zebrafish (Danio rerio). Behav. Genet. 36: 271-284. doi:10.1007/s10519-005-9029-4.
34. Zane, L., Bargelloni, L., and Patarnello, T. 2002. Strategies for microsatellite isolation: a review. Mol. Ecol. 11: 1-16. doi:10.1046/j.0962-1083.2001.01418.x.