메뉴 건너뛰기




Volumn 81, Issue 22, 2007, Pages 12179-12188

Evolution of human immunodeficiency virus type 1 cytotoxic T-lymphocyte epitopes: Fitness-balanced escape

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CD8 ANTIGEN; EPITOPE; VIRUS PROTEIN;

EID: 36049027844     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01277-07     Document Type: Article
Times cited : (67)

References (66)
  • 1
    • 0037302428 scopus 로고    scopus 로고
    • Addo, M. M., X. G. Yu, A. Rathod, D. Cohen, R. L. Eldridge, D. Strick, M. N. Johnston, C. Corcoran, A. G. Wurcel, C. A. Fitzpatrick, M. E. Feeney, W. R. Rodriguez, N. Basgoz, R. Draenert, D. R. Stone, C. Brander, P. J. R. Goulder, E. S. Rosenberg, M. Altfeld, and B. D. Walker. 2003. Comprehensive epitope analysis of human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses directed against the entire expressed HIV-1 genome demonstrate broadly directed responses, but no correlation to viral load. J. Virol. 77:2081-2092.
    • Addo, M. M., X. G. Yu, A. Rathod, D. Cohen, R. L. Eldridge, D. Strick, M. N. Johnston, C. Corcoran, A. G. Wurcel, C. A. Fitzpatrick, M. E. Feeney, W. R. Rodriguez, N. Basgoz, R. Draenert, D. R. Stone, C. Brander, P. J. R. Goulder, E. S. Rosenberg, M. Altfeld, and B. D. Walker. 2003. Comprehensive epitope analysis of human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses directed against the entire expressed HIV-1 genome demonstrate broadly directed responses, but no correlation to viral load. J. Virol. 77:2081-2092.
  • 2
    • 0029871010 scopus 로고    scopus 로고
    • Molecular analysis of presentation by HLA-A2.1 of a promiscuously binding V3 loop peptide from the HIV-envelope protein to human cytotoxic T lymphocytes
    • Alexander-Miller, M. A., K. C. Parker, T. Tsukui, C. D. Pendleton, J. E. Coligan, and J. A. Berzofsky. 1996. Molecular analysis of presentation by HLA-A2.1 of a promiscuously binding V3 loop peptide from the HIV-envelope protein to human cytotoxic T lymphocytes. Int. Immunol. 8:641-649.
    • (1996) Int. Immunol , vol.8 , pp. 641-649
    • Alexander-Miller, M.A.1    Parker, K.C.2    Tsukui, T.3    Pendleton, C.D.4    Coligan, J.E.5    Berzofsky, J.A.6
  • 3
    • 27144513224 scopus 로고    scopus 로고
    • + T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. J. Virol. 79:13239-13249.
    • + T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. J. Virol. 79:13239-13249.
  • 6
    • 34248366936 scopus 로고    scopus 로고
    • Epitope-dependent avidity thresholds for cytotoxic T-lymphocyte clearance of virus-infected cells
    • Bennett, M. S., H. L. Ng, M. Dagarag, A. Ali, and O. O. Yang. 2007. Epitope-dependent avidity thresholds for cytotoxic T-lymphocyte clearance of virus-infected cells. J. Virol. 81:4973-4980.
    • (2007) J. Virol , vol.81 , pp. 4973-4980
    • Bennett, M.S.1    Ng, H.L.2    Dagarag, M.3    Ali, A.4    Yang, O.O.5
  • 8
    • 0028041344 scopus 로고
    • + cytotoxic T-lymphocyte activity associated with control of viremia in primary human immunodeficiency virus type 1 infection
    • + cytotoxic T-lymphocyte activity associated with control of viremia in primary human immunodeficiency virus type 1 infection. J. Virol. 68:6103-6110.
    • (1994) J. Virol , vol.68 , pp. 6103-6110
    • Borrow, P.1    Lewick, H.2    Hahn, B.H.3    Shaw, G.M.4    Oldstone, M.B.A.5
  • 9
    • 16944365445 scopus 로고    scopus 로고
    • Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
    • Borrow, P., H. Lewicki, X. Wei, M. S. Horwitz, N. Peffer, H. Meyers, J. A. Nelson, J. E. Gairin, B. H. Hahn, M. B. Oldstone, and G. M. Shaw. 1997. Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nat. Med. 3:205-211.
    • (1997) Nat. Med , vol.3 , pp. 205-211
    • Borrow, P.1    Lewicki, H.2    Wei, X.3    Horwitz, M.S.4    Peffer, N.5    Meyers, H.6    Nelson, J.A.7    Gairin, J.E.8    Hahn, B.H.9    Oldstone, M.B.10    Shaw, G.M.11
  • 11
    • 0036891034 scopus 로고    scopus 로고
    • Inverse correlation between memory gag-specific cytotoxic T lymphocytes and viral replication in human immunodeficiency virus-infected children
    • Buseyne, F., J. Le Chenadec, B. Corre, F. Porrot, M. Burgard, C. Rouzioux, S. Blanche, M. J. Mayaux, and Y. Riviere. 2002. Inverse correlation between memory gag-specific cytotoxic T lymphocytes and viral replication in human immunodeficiency virus-infected children. J. Infect. Dis. 186:1589-1596.
    • (2002) J. Infect. Dis , vol.186 , pp. 1589-1596
    • Buseyne, F.1    Le Chenadec, J.2    Corre, B.3    Porrot, F.4    Burgard, M.5    Rouzioux, C.6    Blanche, S.7    Mayaux, M.J.8    Riviere, Y.9
  • 14
    • 34547138161 scopus 로고    scopus 로고
    • Crawford, H., J. G. Prado, A. Leslie, S. Hué, I. Honeyborne, S. Reddy, M. van der Stok, Z. Mncube, C. Brander, C. Rousseau, J. I. Mullins, R. Kaslow, P. Goepfert, S. Allen, E. Hunter, J. Mulenga, P. Kiepiela, B. D. Walker, and P. J. R. Goulder. 2007. Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted gag epitope in chronic human immunodeficiency virus type 1 infection. J. Virol. 81:8346-8351.
    • Crawford, H., J. G. Prado, A. Leslie, S. Hué, I. Honeyborne, S. Reddy, M. van der Stok, Z. Mncube, C. Brander, C. Rousseau, J. I. Mullins, R. Kaslow, P. Goepfert, S. Allen, E. Hunter, J. Mulenga, P. Kiepiela, B. D. Walker, and P. J. R. Goulder. 2007. Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted gag epitope in chronic human immunodeficiency virus type 1 infection. J. Virol. 81:8346-8351.
  • 15
    • 33751310799 scopus 로고    scopus 로고
    • Site-specific amino acid frequency, fitness and the mutational landscape model of adaptation in human immunodeficiency virus type 1
    • da Silva, J. 2006. Site-specific amino acid frequency, fitness and the mutational landscape model of adaptation in human immunodeficiency virus type 1. Genetics 174:1689-1694.
    • (2006) Genetics , vol.174 , pp. 1689-1694
    • da Silva, J.1
  • 16
    • 0027980442 scopus 로고
    • Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays
    • Delwart, E. L., H. W. Sheppard, B. D. Walker, J. Goudsmit, and J. I. Mullins. 1994. Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. J. Virol. 68:6672-6683.
    • (1994) J. Virol , vol.68 , pp. 6672-6683
    • Delwart, E.L.1    Sheppard, H.W.2    Walker, B.D.3    Goudsmit, J.4    Mullins, J.I.5
  • 17
    • 0035253434 scopus 로고    scopus 로고
    • High-avidity CTL exploit two complementary mechanisms to provide better protection against viral infection than low-avidity CTL
    • Derby, M., M. Alexander-Miller, R. Tse, and J. Berzofsky. 2001. High-avidity CTL exploit two complementary mechanisms to provide better protection against viral infection than low-avidity CTL. J. Immunol. 166:1690-1697.
    • (2001) J. Immunol , vol.166 , pp. 1690-1697
    • Derby, M.1    Alexander-Miller, M.2    Tse, R.3    Berzofsky, J.4
  • 24
    • 0242351944 scopus 로고    scopus 로고
    • AIDS vaccine development: The long and winding road
    • Garber, D. A., and M. B. Feinberg. 2003. AIDS vaccine development: the long and winding road. AIDS Rev. 5:131-139.
    • (2003) AIDS Rev , vol.5 , pp. 131-139
    • Garber, D.A.1    Feinberg, M.B.2
  • 29
    • 0038805436 scopus 로고    scopus 로고
    • High frequency of syncytium-inducing and CXCR4-tropic viruses among human immunodeficiency virus type 1 subtype C-infected patients receiving antiretroviral treatment
    • Johnston, E. R., L. S. Zijenah, S. Mutetwa, R. Kantor, C. Kittinunvorakoon, and D. A. Katzenstein. 2003. High frequency of syncytium-inducing and CXCR4-tropic viruses among human immunodeficiency virus type 1 subtype C-infected patients receiving antiretroviral treatment. J. Virol. 77:7682-7688.
    • (2003) J. Virol , vol.77 , pp. 7682-7688
    • Johnston, E.R.1    Zijenah, L.S.2    Mutetwa, S.3    Kantor, R.4    Kittinunvorakoon, C.5    Katzenstein, D.A.6
  • 32
    • 33846101731 scopus 로고    scopus 로고
    • + T cell responses to different HIV proteins have discordant associations with viral load. Nat. Med. I3:46-53.
    • + T cell responses to different HIV proteins have discordant associations with viral load. Nat. Med. I3:46-53.
  • 34
    • 36048944909 scopus 로고    scopus 로고
    • HIV molecular immunology 2005. LA-UR 06-0036
    • Korber, B. T. M, C. Brander, B. F. Haynes, R. Koup, J. P. Moore, B. D. Walker, and D. I. Watkins ed, Los Alamos National Laboratory, Los Alamos, NM
    • Korber, B. T. M., C. Brander, B. F. Haynes, R. Koup, J. P. Moore, B. D. Walker, and D. I. Watkins (ed.). 2005. HIV molecular immunology 2005. LA-UR 06-0036. Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM.
    • (2005) Theoretical Biology and Biophysics
  • 36
    • 0028337166 scopus 로고
    • Temporal association of cellular immune responses with the initial control of viremia in primary human immunodeficiency virus type 1 syndrome
    • Koup, R. A., J. T. Safrit, Y. Cao, C. A. Andrews, G. McLeod, W. Borkowsky, C. Farthing, and D. D. Ho. 1994. Temporal association of cellular immune responses with the initial control of viremia in primary human immunodeficiency virus type 1 syndrome. J. Virol. 68:4650-4655.
    • (1994) J. Virol , vol.68 , pp. 4650-4655
    • Koup, R.A.1    Safrit, J.T.2    Cao, Y.3    Andrews, C.A.4    McLeod, G.5    Borkowsky, W.6    Farthing, C.7    Ho, D.D.8
  • 37
    • 36048977698 scopus 로고    scopus 로고
    • Kuiken, C., B. Foley, E. Freed, B. Hahn, B. Korber, P. Marx, F. McCutchan, J. W. Mellors, and S. Wolinksy (ed.). 2002. HIV sequence compendium 2002. LA-UR 03-3564. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.
    • Kuiken, C., B. Foley, E. Freed, B. Hahn, B. Korber, P. Marx, F. McCutchan, J. W. Mellors, and S. Wolinksy (ed.). 2002. HIV sequence compendium 2002. LA-UR 03-3564. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.
  • 38
    • 21144431528 scopus 로고    scopus 로고
    • Leitner, T, B. Foley, B. Hahn, P. Marx, F. McCutchan, J. W. Mellors, S. Wolinsky, and B. Korber ed, Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM
    • Leitner, T., B. Foley, B. Hahn, P. Marx, F. McCutchan, J. W. Mellors, S. Wolinsky, and B. Korber (ed.). 2006. HIV sequence compendium 2005. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.
    • (2006) HIV sequence compendium 2005
  • 41
    • 1842741699 scopus 로고    scopus 로고
    • Leslie, A., J., K. J. Pfafferott, P. Chetty, R. Draenert, M. M. Addo, M. Feeney, Y. Tang, E. C. Holmes, T. Allen, J. G. Prado, M. Altfeld, C. Brander, C. Dixon, D. Ramduth, P. Jeena, S. A. Thomas, A. St. John, T. A. Roach, B. Kupfer, G. Luzzi, A. Edwards, G. Taylor, H. Lyall, G. Tudor-Williams, V. Novelli, J. Martinez-Picado, P. Kiepiela, B. D. Walker, and P. J. Goulder. 2004. HIV evolution: CTL escape mutation and reversion after transmission. Nat. Med. 10:282-289.
    • Leslie, A., J., K. J. Pfafferott, P. Chetty, R. Draenert, M. M. Addo, M. Feeney, Y. Tang, E. C. Holmes, T. Allen, J. G. Prado, M. Altfeld, C. Brander, C. Dixon, D. Ramduth, P. Jeena, S. A. Thomas, A. St. John, T. A. Roach, B. Kupfer, G. Luzzi, A. Edwards, G. Taylor, H. Lyall, G. Tudor-Williams, V. Novelli, J. Martinez-Picado, P. Kiepiela, B. D. Walker, and P. J. Goulder. 2004. HIV evolution: CTL escape mutation and reversion after transmission. Nat. Med. 10:282-289.
  • 44
    • 33645034663 scopus 로고    scopus 로고
    • Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection
    • Liu, Y., J. I. Mullins, and J. E. Mittler. 2006. Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection. Virology 347:140-146.
    • (2006) Virology , vol.347 , pp. 140-146
    • Liu, Y.1    Mullins, J.I.2    Mittler, J.E.3
  • 45
    • 34547115470 scopus 로고    scopus 로고
    • Natural variation in the V3 crown of human immunodeficiency virus type 1 affects replicative fitness and entry inhibitor sensitivity
    • Lobritz, M. A., A. J. Marozsan, R. M. Troyer, and E. J. Arts. 2007. Natural variation in the V3 crown of human immunodeficiency virus type 1 affects replicative fitness and entry inhibitor sensitivity. J. Virol. 81:8258-8269.
    • (2007) J. Virol , vol.81 , pp. 8258-8269
    • Lobritz, M.A.1    Marozsan, A.J.2    Troyer, R.M.3    Arts, E.J.4
  • 49
    • 0037165969 scopus 로고    scopus 로고
    • Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
    • Moore, C. B., M. John, I. R. James, F. T. Christiansen, C. S. Witt, and S. A. Mallal. 2002. Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296:1439-1443.
    • (2002) Science , vol.296 , pp. 1439-1443
    • Moore, C.B.1    John, M.2    James, I.R.3    Christiansen, F.T.4    Witt, C.S.5    Mallal, S.A.6
  • 50
    • 24944450460 scopus 로고    scopus 로고
    • A yeast recombination-based cloning system to produce chimeric HIV-1 viruses and express HIV-1 genes
    • Moore, D. M., E. J. Arts, Y. Gao, and A. J. Marozsan. 2005. A yeast recombination-based cloning system to produce chimeric HIV-1 viruses and express HIV-1 genes. Methods Mol. Biol. 304:369-385.
    • (2005) Methods Mol. Biol , vol.304 , pp. 369-385
    • Moore, D.M.1    Arts, E.J.2    Gao, Y.3    Marozsan, A.J.4
  • 51
    • 0030796220 scopus 로고    scopus 로고
    • Mullins, J. I. 1997. Curtailing the AIDS pandemic. Science 276:1955-1957. (Letter.)
    • Mullins, J. I. 1997. Curtailing the AIDS pandemic. Science 276:1955-1957. (Letter.)
  • 57
    • 0027979442 scopus 로고
    • Characterization of human immunodeficiency virus type 1-specific cytotoxic T lymphocyte clones isolated during acute seroconversion: Recognition of autologous virus sequences within a conserved immunodominant epitope
    • Safrit, J. T., C. A. Andrews, T. Zhu, D. D. Ho, and R. A. Koup. 1994. Characterization of human immunodeficiency virus type 1-specific cytotoxic T lymphocyte clones isolated during acute seroconversion: recognition of autologous virus sequences within a conserved immunodominant epitope. J. Exp. Med. 179:463-472.
    • (1994) J. Exp. Med , vol.179 , pp. 463-472
    • Safrit, J.T.1    Andrews, C.A.2    Zhu, T.3    Ho, D.D.4    Koup, R.A.5
  • 58
    • 0345535132 scopus 로고    scopus 로고
    • Measuring the frequency of mouse and human cytotoxic T cells by the Lysispot assay: Independent regulation of cytokine secretion and short-term killing
    • Snyder, J. E., W. J. Bowers, A. M. Livingstone, F. E. Lee, H. J. Federoff, and T. R. Mosmann. 2003. Measuring the frequency of mouse and human cytotoxic T cells by the Lysispot assay: independent regulation of cytokine secretion and short-term killing. Nat. Med. 9:231-235.
    • (2003) Nat. Med , vol.9 , pp. 231-235
    • Snyder, J.E.1    Bowers, W.J.2    Livingstone, A.M.3    Lee, F.E.4    Federoff, H.J.5    Mosmann, T.R.6
  • 62
    • 0141886176 scopus 로고    scopus 로고
    • Impacts of avidity and specificity on the antiviral efficiency of HIV-1-specific CTL
    • Yang, O. O., P. T. Sarkis, A. Trocha, S. A. Kalams, R. P. Johnson, and B. D. Walker. 2003. Impacts of avidity and specificity on the antiviral efficiency of HIV-1-specific CTL. J. Immunol. 171:3718-3724.
    • (2003) J. Immunol , vol.171 , pp. 3718-3724
    • Yang, O.O.1    Sarkis, P.T.2    Trocha, A.3    Kalams, S.A.4    Johnson, R.P.5    Walker, B.D.6
  • 63
    • 0030885892 scopus 로고    scopus 로고
    • + cells in human immunodeficiency virus type 1 pathogenesis: Cytolytic and noncytolytic inhibition of viral replication
    • + cells in human immunodeficiency virus type 1 pathogenesis: cytolytic and noncytolytic inhibition of viral replication. Adv. Immunol. 66:273-311.
    • (1997) Adv. Immunol , vol.66 , pp. 273-311
    • Yang, O.O.1    Walker, B.D.2
  • 64
    • 9144259999 scopus 로고    scopus 로고
    • Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection
    • Yokomaku, Y., H. Miura, H. Tomiyama, A. Kawana-Tachikawa, M. Takiguchi, A. Kojima, Y. Nagai, A. Iwamoto, Z. Matsuda, and K. Ariyoshi. 2004. Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection. J. Virol. 78:1324-1332.
    • (2004) J. Virol , vol.78 , pp. 1324-1332
    • Yokomaku, Y.1    Miura, H.2    Tomiyama, H.3    Kawana-Tachikawa, A.4    Takiguchi, M.5    Kojima, A.6    Nagai, Y.7    Iwamoto, A.8    Matsuda, Z.9    Ariyoshi, K.10
  • 65
    • 0036340475 scopus 로고    scopus 로고
    • Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation
    • Yusim, K., C. Kesmir, B. Gaschen, M. M. Addo, M. Altfeld, S. Brunak, A. Chigaev, V. Detours, and B. T. Korber. 2002. Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation. J. Virol. 76:8757-8768.
    • (2002) J. Virol , vol.76 , pp. 8757-8768
    • Yusim, K.1    Kesmir, C.2    Gaschen, B.3    Addo, M.M.4    Altfeld, M.5    Brunak, S.6    Chigaev, A.7    Detours, V.8    Korber, B.T.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.