-
1
-
-
33744964530
-
Crystal structure and nonhomologous end-joining function of the ligase component of Mycobacterium DNA ligase D
-
Akey D, Martins A, Aniukwu J, Glickman MS, Shuman S, Berger JM. 2006. Crystal structure and nonhomologous end-joining function of the ligase component of Mycobacterium DNA ligase D. J. Biol. Chem. 281:13412-23
-
(2006)
J. Biol. Chem
, vol.281
, pp. 13412-13423
-
-
Akey, D.1
Martins, A.2
Aniukwu, J.3
Glickman, M.S.4
Shuman, S.5
Berger, J.M.6
-
2
-
-
0022910893
-
Localization of the gam gene of bacteriophage Mu and characterisation of the gene product
-
Akroyd J, Symonds N. 1986. Localization of the gam gene of bacteriophage Mu and characterisation of the gene product. Gene 49:273-82
-
(1986)
Gene
, vol.49
, pp. 273-282
-
-
Akroyd, J.1
Symonds, N.2
-
3
-
-
0033574503
-
Gleaning nontrivial structural, functional and evolutionary information about proteins by iterative database searches
-
Aravind L, Koonin EV. 1999. Gleaning nontrivial structural, functional and evolutionary information about proteins by iterative database searches. J. Mol. Biol. 287:1023-40
-
(1999)
J. Mol. Biol
, vol.287
, pp. 1023-1040
-
-
Aravind, L.1
Koonin, E.V.2
-
4
-
-
0034889360
-
Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system
-
Aravind L, Koonin EV. 2001. Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system. Genome Res. 11:1365-74
-
(2001)
Genome Res
, vol.11
, pp. 1365-1374
-
-
Aravind, L.1
Koonin, E.V.2
-
5
-
-
0032530488
-
Toprim - a conserved catalytic domain in type Ia and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins
-
Aravind L, Leipe DD, Koonin EV. 1998. Toprim - a conserved catalytic domain in type Ia and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. Nucleic Acids Res. 26:4205-13
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4205-4213
-
-
Aravind, L.1
Leipe, D.D.2
Koonin, E.V.3
-
6
-
-
0031054975
-
Ku selectively transfers between DNA molecules with homologous ends
-
Bliss TM, Lane DP. 1997. Ku selectively transfers between DNA molecules with homologous ends. J. Biol. Chem. 272:5765-73
-
(1997)
J. Biol. Chem
, vol.272
, pp. 5765-5773
-
-
Bliss, T.M.1
Lane, D.P.2
-
7
-
-
0029791694
-
Saccharomyces cerevisiae Ku70 potentiates illegitimate DNA double-strand break repair and serves as a barrier to error-prone DNA repair pathways
-
Boulton SJ, Jackson SP. 1996. Saccharomyces cerevisiae Ku70 potentiates illegitimate DNA double-strand break repair and serves as a barrier to error-prone DNA repair pathways. EMBO J. 15:5093-103
-
(1996)
EMBO J
, vol.15
, pp. 5093-5103
-
-
Boulton, S.J.1
Jackson, S.P.2
-
8
-
-
33645781346
-
Making ends meet: Repairing breaks in bacterial DNA by nonhomologous end-joining
-
Bowater R, Doherty AJ. 2006. Making ends meet: repairing breaks in bacterial DNA by nonhomologous end-joining. PLoS Genet. 2:e8
-
(2006)
PLoS Genet
, vol.2
-
-
Bowater, R.1
Doherty, A.J.2
-
9
-
-
0032127632
-
The role of DNA damage in stationary phase ('adaptive') mutation
-
Bridges BA. 1998. The role of DNA damage in stationary phase ('adaptive') mutation. Mum. Res. 408:1-9
-
(1998)
Mum. Res
, vol.408
, pp. 1-9
-
-
Bridges, B.A.1
-
10
-
-
0035695023
-
Recombination at double-strand breaks and DNA ends: Conserved mechanisms from phage to humans
-
Cromie GA, Connelly JC, Leach DR. 2001. Recombination at double-strand breaks and DNA ends: conserved mechanisms from phage to humans. Mol. Cell 8:1163-74
-
(2001)
Mol. Cell
, vol.8
, pp. 1163-1174
-
-
Cromie, G.A.1
Connelly, J.C.2
Leach, D.R.3
-
12
-
-
23844464546
-
DNA joint dependence of pol X family polymerase action in nonhomologous end joining
-
Daley JM, Laan RL, Suresh A, Wilson TE. 2005. DNA joint dependence of pol X family polymerase action in nonhomologous end joining. J. Biol. Chem. 280:29030-37
-
(2005)
J. Biol. Chem
, vol.280
, pp. 29030-29037
-
-
Daley, J.M.1
Laan, R.L.2
Suresh, A.3
Wilson, T.E.4
-
14
-
-
0032169271
-
Conservation of gene order: A fingerprint of proteins that physically interact
-
Dandekar T, Snel B, Huynen M, Bork P. 1998. Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci. 23:324-28
-
(1998)
Trends Biochem. Sci
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
15
-
-
7444269607
-
Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine
-
Della M, Palmbos PL, Tseng HM, Tonkin LM, Daley JM, et al. 2004. Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine. Science 306:683-85
-
(2004)
Science
, vol.306
, pp. 683-685
-
-
Della, M.1
Palmbos, P.L.2
Tseng, H.M.3
Tonkin, L.M.4
Daley, J.M.5
-
16
-
-
0035856495
-
DNA repair: How Ku makes ends meet
-
Doherty AJ, Jackson SP. 2001. DNA repair: how Ku makes ends meet. Curr. Biol. 11:920-24
-
(2001)
Curr. Biol
, vol.11
, pp. 920-924
-
-
Doherty, A.J.1
Jackson, S.P.2
-
17
-
-
0035816444
-
Identification of bacterial homologues of the Ku DNA repair proteins
-
Doherty AJ, Jackson SP, Weller GR. 2001. Identification of bacterial homologues of the Ku DNA repair proteins. FEBS Lett. 500:186-88
-
(2001)
FEBS Lett
, vol.500
, pp. 186-188
-
-
Doherty, A.J.1
Jackson, S.P.2
Weller, G.R.3
-
18
-
-
0029929070
-
The helix-hairpin-helix DNA-binding motif: A structural basis for nonsequence-specific recognition of DNA
-
Doherty AJ, Serpell LC, Ponting CP. 1996. The helix-hairpin-helix DNA-binding motif: a structural basis for nonsequence-specific recognition of DNA. Nucleic Acids Res. 24:2488-97
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2488-2497
-
-
Doherty, A.J.1
Serpell, L.C.2
Ponting, C.P.3
-
19
-
-
0034327406
-
Structural and mechanistic conservation in DNA ligases
-
Doherty AJ, Suh SW. 2000. Structural and mechanistic conservation in DNA ligases. Nucleic Acids Res. 28:4051-58
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4051-4058
-
-
Doherty, A.J.1
Suh, S.W.2
-
21
-
-
0032792105
-
Involvement of DNA end-binding protein Ku in Ty element retrotransposition
-
Downs JA, Jackson SP. 1999. Involvement of DNA end-binding protein Ku in Ty element retrotransposition. Mol. Cell Biol. 19:6260-68
-
(1999)
Mol. Cell Biol
, vol.19
, pp. 6260-6268
-
-
Downs, J.A.1
Jackson, S.P.2
-
22
-
-
7944231563
-
Non-homologous end-joining factors of Saccharomyces cerevisiae
-
Dudasova Z, Dudas A, Chovanec M. 2004. Non-homologous end-joining factors of Saccharomyces cerevisiae. FEMS Microbiol. Rev. 28:581-601
-
(2004)
FEMS Microbiol. Rev
, vol.28
, pp. 581-601
-
-
Dudasova, Z.1
Dudas, A.2
Chovanec, M.3
-
23
-
-
0032052815
-
Interaction of Ku protein and DNA-dependent protein kinase catalytic subunit with nucleic acids
-
Dynan WS, Yoo S. 1998. Interaction of Ku protein and DNA-dependent protein kinase catalytic subunit with nucleic acids. Nucleic Acids Res. 26:1551-59
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1551-1559
-
-
Dynan, W.S.1
Yoo, S.2
-
24
-
-
1842613501
-
Regulation of endospore formation in Bacillus subtilis
-
Errington J. 2003. Regulation of endospore formation in Bacillus subtilis. Nat. Rev. Microbiol. 1:117-26
-
(2003)
Nat. Rev. Microbiol
, vol.1
, pp. 117-126
-
-
Errington, J.1
-
26
-
-
0033006852
-
Ku, a DNA repair protein with multiple cellular functions?
-
Featherstone C, Jackson SP. 1999. Ku, a DNA repair protein with multiple cellular functions? Mutat. Res. 434:3-15
-
(1999)
Mutat. Res
, vol.434
, pp. 3-15
-
-
Featherstone, C.1
Jackson, S.P.2
-
27
-
-
1542375156
-
A structural solution for the DNA polymerase λ-dependent repair of DNA gaps with minimal homology
-
Garcia-Diaz M, Bebenek K, Krahn JM, Blanco L, Kunkel TA, Pedersen LC. 2004. A structural solution for the DNA polymerase λ-dependent repair of DNA gaps with minimal homology. Mol. Cell 13:561-72
-
(2004)
Mol. Cell
, vol.13
, pp. 561-572
-
-
Garcia-Diaz, M.1
Bebenek, K.2
Krahn, J.M.3
Blanco, L.4
Kunkel, T.A.5
Pedersen, L.C.6
-
28
-
-
0033198709
-
Mapping of protein-protein interactions within the DNA-dependent protein kinase complex
-
Gell D, Jackson SP. 1999. Mapping of protein-protein interactions within the DNA-dependent protein kinase complex. Nucleic Acids Res. 27:3494-502
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3494-3502
-
-
Gell, D.1
Jackson, S.P.2
-
29
-
-
18744380665
-
Mechanism of nonhomologous end-joining in mycobacteria: A low-fidelity repair system driven by Ku, ligase D and ligase C
-
Gong C, Bongiorno P, Martins A, Stephanou NC, Zhu H, et al. 2005. Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C. Nat. Struct. Mol. Biol. 12:304-12
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 304-312
-
-
Gong, C.1
Bongiorno, P.2
Martins, A.3
Stephanou, N.C.4
Zhu, H.5
-
30
-
-
2442717521
-
Biochemical and genetic analysis of the four DNA ligases of mycobacteria
-
Gong C, Martins A, Bongiorno P, Glickman M, Shuman S. 2004. Biochemical and genetic analysis of the four DNA ligases of mycobacteria. J. Biol. Chem. 279:20594-606
-
(2004)
J. Biol. Chem
, vol.279
, pp. 20594-20606
-
-
Gong, C.1
Martins, A.2
Bongiorno, P.3
Glickman, M.4
Shuman, S.5
-
31
-
-
0037417012
-
Mycobacterium tuberculosis in the extracellular compartment: An underestimated adversary
-
Grosset J. 2003. Mycobacterium tuberculosis in the extracellular compartment: an underestimated adversary. Antimicrob. Agents Chemother. 47:833-36
-
(2003)
Antimicrob. Agents Chemother
, vol.47
, pp. 833-836
-
-
Grosset, J.1
-
32
-
-
30344459720
-
Roles of E. coli double-strand-break-repair proteins in stress-induced mutation
-
He AS, Rohatgi PR, Hersh MN, Rosenberg SM. 2006. Roles of E. coli double-strand-break-repair proteins in stress-induced mutation. DNA Repair 5:258-73
-
(2006)
DNA Repair
, vol.5
, pp. 258-273
-
-
He, A.S.1
Rohatgi, P.R.2
Hersh, M.N.3
Rosenberg, S.M.4
-
33
-
-
5644270239
-
Non-homologous end joining dependency of gamma-irradiation-induced adaptive frameshift mutation formation in cell cycle-arrested yeast cells
-
Heidenreich E, Eisler H. 2004. Non-homologous end joining dependency of gamma-irradiation-induced adaptive frameshift mutation formation in cell cycle-arrested yeast cells. Mutat. Res. 556:201-8
-
(2004)
Mutat. Res
, vol.556
, pp. 201-208
-
-
Heidenreich, E.1
Eisler, H.2
-
34
-
-
0037543988
-
Non-homologous end joining as an important mutagenic process in cell cycle-arrested cells
-
Heidenreich E, Novotny R, Kneidinger B, Holzmann V, Wintersberger U. 2003. Non-homologous end joining as an important mutagenic process in cell cycle-arrested cells. EMBO J. 22:2274-83
-
(2003)
EMBO J
, vol.22
, pp. 2274-2283
-
-
Heidenreich, E.1
Novotny, R.2
Kneidinger, B.3
Holzmann, V.4
Wintersberger, U.5
-
35
-
-
0021045679
-
Enzyme action at 3′ termini of ionizing radiation-induced DNA strand breaks
-
Henner WD, Grunberg SM, Haseltine WA. 1983. Enzyme action at 3′ termini of ionizing radiation-induced DNA strand breaks. J. Biol. Chem. 258:15198-205
-
(1983)
J. Biol. Chem
, vol.258
, pp. 15198-15205
-
-
Henner, W.D.1
Grunberg, S.M.2
Haseltine, W.A.3
-
36
-
-
2942674474
-
Adaptive mutation and amplification in Escherichia coli: Two pathways of genome adaptation under stress
-
Hersh MN, Ponder RG, Hastings PJ, Rosenberg SM. 2004. Adaptive mutation and amplification in Escherichia coli: two pathways of genome adaptation under stress. Res. Microbiol. 155:352-59
-
(2004)
Res. Microbiol
, vol.155
, pp. 352-359
-
-
Hersh, M.N.1
Ponder, R.G.2
Hastings, P.J.3
Rosenberg, S.M.4
-
37
-
-
22444435033
-
Origin and evolution of the archaeoeukaryotic primase superfamily and related palm-domain proteins: Structural insights and new members
-
Iyer LM, Koonin EV, Leipe DD, Aravind L. 2005. Origin and evolution of the archaeoeukaryotic primase superfamily and related palm-domain proteins: structural insights and new members. Nucleic Acids Res. 33:3875-96
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3875-3896
-
-
Iyer, L.M.1
Koonin, E.V.2
Leipe, D.D.3
Aravind, L.4
-
38
-
-
33750041949
-
A specific loop in human DNA polymerase mu allows switching between creative and DNA-instructed synthesis
-
Juarez R, Ruiz JF, McElhinny SA, Ramsden D, Blanco L. 2006. A specific loop in human DNA polymerase mu allows switching between creative and DNA-instructed synthesis. Nucleic Acids Res. 34:4572-82
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4572-4582
-
-
Juarez, R.1
Ruiz, J.F.2
McElhinny, S.A.3
Ramsden, D.4
Blanco, L.5
-
39
-
-
4544243679
-
Dormancy phenotype displayed by extracellular Mycobacterium tuberculosis within artificial granulomas in mice
-
Karakousis PC, Yoshimatsu T, Lamichhane G, Woolwine SC, Nuermberger EL, et al. 2004. Dormancy phenotype displayed by extracellular Mycobacterium tuberculosis within artificial granulomas in mice. J. Exp. Med. 200:647-57
-
(2004)
J. Exp. Med
, vol.200
, pp. 647-657
-
-
Karakousis, P.C.1
Yoshimatsu, T.2
Lamichhane, G.3
Woolwine, S.C.4
Nuermberger, E.L.5
-
41
-
-
33645463874
-
Distinct DNA repair pathways involving RecA and nonhomologous end joining in Mycobacterium smegmatis
-
Korycka-Machala M, Brzostek A, Rozalska S, Rumijowska-Galewicz A, Dziedzic R, et al. 2006. Distinct DNA repair pathways involving RecA and nonhomologous end joining in Mycobacterium smegmatis. FEMS Microbiol. Lett. 258:83-91
-
(2006)
FEMS Microbiol. Lett
, vol.258
, pp. 83-91
-
-
Korycka-Machala, M.1
Brzostek, A.2
Rozalska, S.3
Rumijowska-Galewicz, A.4
Dziedzic, R.5
-
42
-
-
0028013486
-
Two different types of double-strand breaks in Saccharomyces cerevisiae are repaired by similar RAD52-independent, nonhomologous recombination events
-
Kramer KM, Brock JA, Bloom K, Moore JK, Haber JE. 1994. Two different types of double-strand breaks in Saccharomyces cerevisiae are repaired by similar RAD52-independent, nonhomologous recombination events. Mol. Cell Biol. 14:1293-301
-
(1994)
Mol. Cell Biol
, vol.14
, pp. 1293-1301
-
-
Kramer, K.M.1
Brock, J.A.2
Bloom, K.3
Moore, J.K.4
Haber, J.E.5
-
43
-
-
0242272059
-
Mending the break: Two DNA double-strand break repair machines in eukaryotes
-
Krejci L, Chen L, van Komen S, Sung P, Tomkinson A. 2003. Mending the break: two DNA double-strand break repair machines in eukaryotes. Prog. Nucleic Acid Res. Mol. Biol. 74:159-201
-
(2003)
Prog. Nucleic Acid Res. Mol. Biol
, vol.74
, pp. 159-201
-
-
Krejci, L.1
Chen, L.2
van Komen, S.3
Sung, P.4
Tomkinson, A.5
-
44
-
-
0942268167
-
Repair of DNA double strand breaks by nonhomologous end joining
-
Lees-Miller SP, Meek K. 2003. Repair of DNA double strand breaks by nonhomologous end joining. Biochimie 85:1161-73
-
(2003)
Biochimie
, vol.85
, pp. 1161-1173
-
-
Lees-Miller, S.P.1
Meek, K.2
-
45
-
-
0035997347
-
The bacterial RecA protein and the recombinational DNA repair of stalled replication forks
-
Lusetti SL, Cox MM. 2002. The bacterial RecA protein and the recombinational DNA repair of stalled replication forks. Annu. Rev. Biochem. 71:71-100
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 71-100
-
-
Lusetti, S.L.1
Cox, M.M.2
-
46
-
-
9744241712
-
A biochemically defined system for mammalian nonhomologous DNA end joining
-
Ma Y, Lu H, Tippin B, Goodman MF, Shimazaki N, et al. 2004. A biochemically defined system for mammalian nonhomologous DNA end joining. Mol. Cell 16:701-13
-
(2004)
Mol. Cell
, vol.16
, pp. 701-713
-
-
Ma, Y.1
Lu, H.2
Tippin, B.3
Goodman, M.F.4
Shimazaki, N.5
-
47
-
-
0036293744
-
Association of DNA polymerase mu (pol mu) with Ku and ligase IV: Role for pol mu in end-joining double-strand break repair
-
Mahajan KN, Nick McElhinny SA, Mitchell BS, Ramsden DA. 2002. Association of DNA polymerase mu (pol mu) with Ku and ligase IV: role for pol mu in end-joining double-strand break repair. Mol. Cell Biol. 22:5194-202
-
(2002)
Mol. Cell Biol
, vol.22
, pp. 5194-5202
-
-
Mahajan, K.N.1
Nick McElhinny, S.A.2
Mitchell, B.S.3
Ramsden, D.A.4
-
48
-
-
33746943656
-
Bacillus subtilis SbcC protein plays an important role in DNA interstrand cross-link repair
-
Mascarenhas J, Sanchez H, Tadesse S, Kidane D, Krisnamurthy M, et al. 2006. Bacillus subtilis SbcC protein plays an important role in DNA interstrand cross-link repair. BMC Mol. Biol. 7:20
-
(2006)
BMC Mol. Biol
, vol.7
, pp. 20
-
-
Mascarenhas, J.1
Sanchez, H.2
Tadesse, S.3
Kidane, D.4
Krisnamurthy, M.5
-
49
-
-
2942639702
-
Survival versus maintenance of genetic stability: A conflict of priorities during stress
-
Matic I, Taddei F, Radman M. 2004. Survival versus maintenance of genetic stability: a conflict of priorities during stress. Res. Microbiol. 155:337-41
-
(2004)
Res. Microbiol
, vol.155
, pp. 337-341
-
-
Matic, I.1
Taddei, F.2
Radman, M.3
-
50
-
-
0030049354
-
Radioresistance of Deinococcus radiodurans: Functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation
-
Mattimore V, Battista JR. 1996. Radioresistance of Deinococcus radiodurans: Functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J. Bacteriol. 178:633-37
-
(1996)
J. Bacteriol
, vol.178
, pp. 633-637
-
-
Mattimore, V.1
Battista, J.R.2
-
51
-
-
34247892342
-
Role of DNA repair by nonhomologous end joining in Bacillus subtilis spore resistance to extreme dryness, mono- and polychromatic UV and ionizing radiation
-
Moeller R, Stackebrandt E, Reitz G, Berger T, Rettberg P, et al. 2007. Role of DNA repair by nonhomologous end joining in Bacillus subtilis spore resistance to extreme dryness, mono- and polychromatic UV and ionizing radiation. J. Bacteriol. 189:3306-11
-
(2007)
J. Bacteriol
, vol.189
, pp. 3306-3311
-
-
Moeller, R.1
Stackebrandt, E.2
Reitz, G.3
Berger, T.4
Rettberg, P.5
-
52
-
-
33846075032
-
Structural insight into the substrate specificity of DNA polymerase mu
-
Moon AF, Garcia-Diaz M, Bebenek K, Davis BJ, Zhong X, et al. 2007. Structural insight into the substrate specificity of DNA polymerase mu. Nat. Struct. Mol. Biol. 14:45-53
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 45-53
-
-
Moon, A.F.1
Garcia-Diaz, M.2
Bebenek, K.3
Davis, B.J.4
Zhong, X.5
-
53
-
-
0029976325
-
Cell cycle and genetic requirements of two pathways of non-homologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae
-
Moore JK, Haber JE. 1996. Cell cycle and genetic requirements of two pathways of non-homologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae. Mol. Cell Biol. 16:2164-73
-
(1996)
Mol. Cell Biol
, vol.16
, pp. 2164-2173
-
-
Moore, J.K.1
Haber, J.E.2
-
54
-
-
23044453811
-
A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining
-
Nick McElhinny SA, Havener JM, Garcia-Diaz M, Juarez R, Bebenek K, et al. 2005. A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining. Mol. Cell 19:357-66
-
(2005)
Mol. Cell
, vol.19
, pp. 357-366
-
-
Nick McElhinny, S.A.1
Havener, J.M.2
Garcia-Diaz, M.3
Juarez, R.4
Bebenek, K.5
-
55
-
-
0037379215
-
Polymerase mu is a DNA-directed DNA/RNA polymerase
-
Nick McElhinny SA, Ramsden DA. 2003. Polymerase mu is a DNA-directed DNA/RNA polymerase. Mol. Cell Biol. 23:2309-15
-
(2003)
Mol. Cell Biol
, vol.23
, pp. 2309-2315
-
-
Nick McElhinny, S.A.1
Ramsden, D.A.2
-
57
-
-
0037453742
-
Origins of highly mosaic mycobacteriophage genomes
-
Pedulla ML, Ford ME, Houtz JM, Karthikeyan T, Wadsworth C, et al. 2003. Origins of highly mosaic mycobacteriophage genomes. Cell 113:171-82
-
(2003)
Cell
, vol.113
, pp. 171-182
-
-
Pedulla, M.L.1
Ford, M.E.2
Houtz, J.M.3
Karthikeyan, T.4
Wadsworth, C.5
-
58
-
-
0035989547
-
Kineococcus radiotolerans sp. nov., a radiation-resistant, gram-positive bacterium
-
Phillips RW, Wiegel J, Berry CJ, Fliermans C, Peacock AD, et al. 2002. Kineococcus radiotolerans sp. nov., a radiation-resistant, gram-positive bacterium. Int. J. Syst. Evol. Microbiol. 52:933-38
-
(2002)
Int. J. Syst. Evol. Microbiol
, vol.52
, pp. 933-938
-
-
Phillips, R.W.1
Wiegel, J.2
Berry, C.J.3
Fliermans, C.4
Peacock, A.D.5
-
59
-
-
33846382667
-
Structure and function of a mycobacterial NHEJ DNA repair polymerase
-
Pitcher RS, Brissett NC, Picher AJ, Andrade P, Juarez R, et al. 2007. Structure and function of a mycobacterial NHEJ DNA repair polymerase. J. Mol. Biol. 366:391-405
-
(2007)
J. Mol. Biol
, vol.366
, pp. 391-405
-
-
Pitcher, R.S.1
Brissett, N.C.2
Picher, A.J.3
Andrade, P.4
Juarez, R.5
-
60
-
-
34547842081
-
NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation
-
In press
-
Pitcher RS, Green AJ, Brzostek A, Korycka-Machala M, Dziadek J, Doherty AJ. 2007. NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation. DNA Repair. In press
-
(2007)
DNA Repair
-
-
Pitcher, R.S.1
Green, A.J.2
Brzostek, A.3
Korycka-Machala, M.4
Dziadek, J.5
Doherty, A.J.6
-
61
-
-
33748163109
-
Mycobacteriophage exploit NHEJ to facilitate genome circularization
-
Pitcher RS, Tonkin LM, Daley JM, Palmbos PL, Green AJ, et al. 2006. Mycobacteriophage exploit NHEJ to facilitate genome circularization. Mol. Cell 23:743-48
-
(2006)
Mol. Cell
, vol.23
, pp. 743-748
-
-
Pitcher, R.S.1
Tonkin, L.M.2
Daley, J.M.3
Palmbos, P.L.4
Green, A.J.5
-
62
-
-
22544434934
-
Domain structure of a NHEJ DNA repair ligase from Mycobacterium tuberculosis
-
Pitcher RS, Tonkin LM, Green AJ, Doherty AJ. 2005. Domain structure of a NHEJ DNA repair ligase from Mycobacterium tuberculosis. J. Mol. Biol. 351:531-44
-
(2005)
J. Mol. Biol
, vol.351
, pp. 531-544
-
-
Pitcher, R.S.1
Tonkin, L.M.2
Green, A.J.3
Doherty, A.J.4
-
63
-
-
22544482015
-
New insights into NHEJ repair processes in prokaryotes
-
Pitcher RS, Wilson TE, Doherty AJ. 2005. New insights into NHEJ repair processes in prokaryotes. Cell Cycle 4:675-78
-
(2005)
Cell Cycle
, vol.4
, pp. 675-678
-
-
Pitcher, R.S.1
Wilson, T.E.2
Doherty, A.J.3
-
64
-
-
24944477416
-
A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation
-
Ponder RG, Fonville NC, Rosenberg SM. 2005. A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation. Mol. Cell 19:791-804
-
(2005)
Mol. Cell
, vol.19
, pp. 791-804
-
-
Ponder, R.G.1
Fonville, N.C.2
Rosenberg, S.M.3
-
65
-
-
0027948550
-
Desiccation tolerance of prokaryotes
-
Potts M. 1994. Desiccation tolerance of prokaryotes. Microbiol. Rev. 58:755-805
-
(1994)
Microbiol. Rev
, vol.58
, pp. 755-805
-
-
Potts, M.1
-
66
-
-
0032518680
-
Ku protein stimulates DNA end joining by mammalian DNA ligases: A direct role for Ku in repair of DNA double-strand breaks
-
Ramsden DA, Gellert M. 1998. Ku protein stimulates DNA end joining by mammalian DNA ligases: a direct role for Ku in repair of DNA double-strand breaks. EMBO J. 17:609-14
-
(1998)
EMBO J
, vol.17
, pp. 609-614
-
-
Ramsden, D.A.1
Gellert, M.2
-
67
-
-
20444419421
-
Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages
-
Rengarajan J, Bloom BR, Rubin EJ. 2005. Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages. Proc. Natl. Acad. Sci. USA 102:8327-32
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 8327-8332
-
-
Rengarajan, J.1
Bloom, B.R.2
Rubin, E.J.3
-
68
-
-
33750033205
-
The role of the nonhomologous end-joining DNA double-strand break repair pathway in telomere biology
-
Riha K, Heacock ML, Shippen DE. 2006. The role of the nonhomologous end-joining DNA double-strand break repair pathway in telomere biology. Annu. Rev. Genet. 40:237-77
-
(2006)
Annu. Rev. Genet
, vol.40
, pp. 237-277
-
-
Riha, K.1
Heacock, M.L.2
Shippen, D.E.3
-
69
-
-
0035404535
-
Evolving responsively: Adaptive mutation
-
Rosenberg SM. 2001. Evolving responsively: adaptive mutation. Nat. Rev. Genet. 2:504-15
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 504-515
-
-
Rosenberg, S.M.1
-
70
-
-
0022976432
-
Nonhomologus recombination in mammalian cells: Role of short sequence homologies in the joining reaction
-
Roth DB, Wilson JH. 1986. Nonhomologus recombination in mammalian cells: role of short sequence homologies in the joining reaction. Mol. Cell. Biol. 6:4295-304
-
(1986)
Mol. Cell. Biol
, vol.6
, pp. 4295-4304
-
-
Roth, D.B.1
Wilson, J.H.2
-
71
-
-
7444228703
-
Overexpression of human DNA polymerase mu (pol mu) in a Burkitt's lymphoma cell line affects the somatic hypermutation rate
-
Ruiz JF, Lucas D, Garcia-Palomero E, Saez AI, Gonzalez MA, et al. 2004. Overexpression of human DNA polymerase mu (pol mu) in a Burkitt's lymphoma cell line affects the somatic hypermutation rate. Nucleic Acids Res. 32:5861-73
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5861-5873
-
-
Ruiz, J.F.1
Lucas, D.2
Garcia-Palomero, E.3
Saez, A.I.4
Gonzalez, M.A.5
-
72
-
-
0037168516
-
Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts
-
Rydberg B, Game J. 2002. Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts. Proc. Natl. Acad. Sci. USA 99:16654-59
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16654-16659
-
-
Rydberg, B.1
Game, J.2
-
73
-
-
0018727015
-
Isolation of radiation-resistant bacteria without exposure to irradiation
-
Sanders SW, Maxcy RB. 1979. Isolation of radiation-resistant bacteria without exposure to irradiation. Appl. Environ. Microbiol. 38:436-39
-
(1979)
Appl. Environ. Microbiol
, vol.38
, pp. 436-439
-
-
Sanders, S.W.1
Maxcy, R.B.2
-
74
-
-
0028868465
-
Mechanisms for the prevention of damage to DNA in spores of Bacillus species
-
Setlow P. 1995. Mechanisms for the prevention of damage to DNA in spores of Bacillus species. Annu. Rev. Microbiol. 49:29-54
-
(1995)
Annu. Rev. Microbiol
, vol.49
, pp. 29-54
-
-
Setlow, P.1
-
76
-
-
9144271294
-
Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks
-
Singleton MR, Dillingham MS, Gaudier M, Kowalczykowski SC, Wigley DB. 2004. Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks. Nature 432:187-93
-
(2004)
Nature
, vol.432
, pp. 187-193
-
-
Singleton, M.R.1
Dillingham, M.S.2
Gaudier, M.3
Kowalczykowski, S.C.4
Wigley, D.B.5
-
77
-
-
22744450170
-
Retroviral DNA integration and the DNA damage response
-
Skalka AM, Katz RA. 2005. Retroviral DNA integration and the DNA damage response. Cell Death Differ. 12(Suppl. 1):971-78
-
(2005)
Cell Death Differ
, vol.12
, Issue.SUPPL. 1
, pp. 971-978
-
-
Skalka, A.M.1
Katz, R.A.2
-
79
-
-
0029938467
-
Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7
-
Subramanya HS, Doherty AJ, Ashford SR, Wigley DB. 1996. Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7. Cell 85:607-15
-
(1996)
Cell
, vol.85
, pp. 607-615
-
-
Subramanya, H.S.1
Doherty, A.J.2
Ashford, S.R.3
Wigley, D.B.4
-
80
-
-
0036785323
-
Adaptive, or stationary-phase, mutagenesis, a component of bacterial differentiation in Bacillus subtilis
-
Sung HM, Yasbin RE. 2002. Adaptive, or stationary-phase, mutagenesis, a component of bacterial differentiation in Bacillus subtilis. J. Bacteriol. 184:5641-53
-
(2002)
J. Bacteriol
, vol.184
, pp. 5641-5653
-
-
Sung, H.M.1
Yasbin, R.E.2
-
81
-
-
0028143584
-
Physiological concentrations of purines and pyrimidines
-
Traut TW. 1994. Physiological concentrations of purines and pyrimidines. Mol. Cell Biochem. 140:1-22
-
(1994)
Mol. Cell Biochem
, vol.140
, pp. 1-22
-
-
Traut, T.W.1
-
82
-
-
0035833552
-
Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair
-
Walker JR, Corpina RA, Goldberg J. 2001. Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair. Nature 412:607-14
-
(2001)
Nature
, vol.412
, pp. 607-614
-
-
Walker, J.R.1
Corpina, R.A.2
Goldberg, J.3
-
83
-
-
33645097172
-
The forespore line of gene expression in Bacillus subtilis
-
Wang ST, Setlow B, Conlon EM, Lyon JL, Imamura D, et al. 2006. The forespore line of gene expression in Bacillus subtilis. J. Mol. Biol. 358:16-37
-
(2006)
J. Mol. Biol
, vol.358
, pp. 16-37
-
-
Wang, S.T.1
Setlow, B.2
Conlon, E.M.3
Lyon, J.L.4
Imamura, D.5
-
84
-
-
0035860377
-
A family of DNA repair ligases in bacteria?
-
Weller GR, Doherty AJ. 2001. A family of DNA repair ligases in bacteria? FEBS Lett. 505:340-42
-
(2001)
FEBS Lett
, vol.505
, pp. 340-342
-
-
Weller, G.R.1
Doherty, A.J.2
-
85
-
-
0037031655
-
Identification of a DNA nonhomologous end-joining complex in bacteria
-
Weller GR, Kysela B, Roy R, Tonkin LM, Scanlan E, et al. 2002. Identification of a DNA nonhomologous end-joining complex in bacteria. Science 297:1686-89
-
(2002)
Science
, vol.297
, pp. 1686-1689
-
-
Weller, G.R.1
Kysela, B.2
Roy, R.3
Tonkin, L.M.4
Scanlan, E.5
-
87
-
-
17444391648
-
Analysis of ligation and DNA binding by Escherichia coli DNA ligase (ligA)
-
Wilkinson A, Smith A, Bullard D, Lavesa-Curto M, Sayer H, et al. 2005. Analysis of ligation and DNA binding by Escherichia coli DNA ligase (ligA). Biochim. Biophys. Acta 1749:113-22
-
(2005)
Biochim. Biophys. Acta
, vol.1749
, pp. 113-122
-
-
Wilkinson, A.1
Smith, A.2
Bullard, D.3
Lavesa-Curto, M.4
Sayer, H.5
-
88
-
-
0037308590
-
Non-homologous end-joining: Bacteria join the chromosome breakdance
-
Wilson TE, Topper LM, Palmbos PL. 2003. Non-homologous end-joining: Bacteria join the chromosome breakdance. Trends Biochem. Sci. 28:62-66
-
(2003)
Trends Biochem. Sci
, vol.28
, pp. 62-66
-
-
Wilson, T.E.1
Topper, L.M.2
Palmbos, P.L.3
-
89
-
-
33748754050
-
Nucleotide misincorporation, 3′-mismatch extension, and responses to abasic sites and DNA adducts by the polymerase component of bacterial DNA ligase D
-
Yakovleva L, Shuman S. 2006. Nucleotide misincorporation, 3′-mismatch extension, and responses to abasic sites and DNA adducts by the polymerase component of bacterial DNA ligase D. J. Biol. Chem. 281:25026-40
-
(2006)
J. Biol. Chem
, vol.281
, pp. 25026-25040
-
-
Yakovleva, L.1
Shuman, S.2
-
90
-
-
33749533999
-
Reassembly of shattered chromosomes in Deinococcus radiodurans
-
Zahradka K, Slade D, Bailone A, Sommer S, Averbeck D, et al. 2006. Reassembly of shattered chromosomes in Deinococcus radiodurans. Nature 443:569-73
-
(2006)
Nature
, vol.443
, pp. 569-573
-
-
Zahradka, K.1
Slade, D.2
Bailone, A.3
Sommer, S.4
Averbeck, D.5
-
91
-
-
0035158355
-
Highly frequent frameshift DNA synthesis by human DNA polymerase mu
-
Zhang Y, Wu X, Yuan F, Xie Z, Wang Z. 2001. Highly frequent frameshift DNA synthesis by human DNA polymerase mu. Mol. Cell Biol. 21:7995-8006
-
(2001)
Mol. Cell Biol
, vol.21
, pp. 7995-8006
-
-
Zhang, Y.1
Wu, X.2
Yuan, F.3
Xie, Z.4
Wang, Z.5
-
92
-
-
32444451295
-
Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
-
Zhu H, Nandakumar J, Aniukwu J, Wang LK, Glickman MS, et al. 2006. Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D. Proc. Natl. Acad. Sci. USA 103:1711-16
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 1711-1716
-
-
Zhu, H.1
Nandakumar, J.2
Aniukwu, J.3
Wang, L.K.4
Glickman, M.S.5
-
93
-
-
22544469168
-
Novel 3′-ribonuclease and 3′-phosphatase activities of the bacterial nonhomologous end-joining protein, DNA ligase D
-
Zhu H, Shuman S. 2005. Novel 3′-ribonuclease and 3′-phosphatase activities of the bacterial nonhomologous end-joining protein, DNA ligase D. J. Biol. Chem. 280:25973-81
-
(2005)
J. Biol. Chem
, vol.280
, pp. 25973-25981
-
-
Zhu, H.1
Shuman, S.2
-
94
-
-
12844250647
-
A primer-dependent polymerase function of Pseudomonas aeruginosa ATP-dependent DNA ligase (ligD)
-
Zhu H, Shuman S. 2005. A primer-dependent polymerase function of Pseudomonas aeruginosa ATP-dependent DNA ligase (ligD). J. Biol. Chem. 280:418-27
-
(2005)
J. Biol. Chem
, vol.280
, pp. 418-427
-
-
Zhu, H.1
Shuman, S.2
-
95
-
-
33744929414
-
Substrate specificity and structure-function analysis of the 3′-phosphoesterase component of the bacterial NHEJ protein, DNA ligase D
-
Zhu H, Shuman S. 2006. Substrate specificity and structure-function analysis of the 3′-phosphoesterase component of the bacterial NHEJ protein, DNA ligase D. J. Biol. Chem. 281:13873-81
-
(2006)
J. Biol. Chem
, vol.281
, pp. 13873-13881
-
-
Zhu, H.1
Shuman, S.2
-
96
-
-
26644442141
-
Essential constituents of the 3′-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme
-
Zhu H, Wang LK, Shuman S. 2005. Essential constituents of the 3′-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme J. Biol. Chem. 280:33707-15
-
(2005)
J. Biol. Chem
, vol.280
, pp. 33707-33715
-
-
Zhu, H.1
Wang, L.K.2
Shuman, S.3
|