The role of DNA damage in stationary phase ('adaptive') mutation

Mutation Research - DNA Repair

Volumn 408, Issue 1, 1998, Pages 1-9

  Bridges, Bryn A ^a  

^a UNIVERSITY OF SUSSEX   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATING AGENT;

ADAPTATION; DNA DAMAGE; DNA REPAIR; DNA REPLICATION; DNA SYNTHESIS INHIBITION; GENE MUTATION; METABOLIC ACTIVATION; MUTAGENESIS; MUTATOR GENE; PRIORITY JOURNAL; REVIEW;

EID: 0032127632     PISSN: 09218777     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0921-8777(98)00008-1     Document Type: Article

References (79)

1. [1] D.A.P. Evans, J.P.H. Burbach, F.W. van Leeuwen, Somatic mutations in the brain: relationship to aging?, Mutation Res. 338 (1995) 173-182.
2. [2] B. Richards, H. Zhang, G. Phear, M. Meuth, Conditional mutator phenotypes in hMSH2-deficient tumor cell lines, Science 277 (1997) 1523-1526.
3. [3] F.J. Ryan, T. Okada, T. Nagata, Spontaneous mutation in spheroplasts of Escherichia coli, J. Gen. Microbiol. 30 (1963) 193-199.
4. [4] F.J. Ryan, D. Nakada, M.J. Schneider, Is DNA replication a necessary condition for spontaneous mutation?, Z. Vererbungslehre 92 (1961) 38-41.
5. [5] F.J. Ryan, Spontaneous mutation in non-dividing bacteria, Genetics 40 (1955) 726-738.
6. [6] J. Cairns, J. Overbaugh, S. Miller, The origin of mutants, Nature 335 (1988) 142-145.
7. [7] B.G. Hall, Adaptive evolution that requires multiple spontaneous mutations: I. Mutations involving an insertion sequence, Genetics 120 (1988) 887-897.
8. [8] J.A. Shapiro, Observation on the formation of clones containing araB-lacZ cistron fusions, Molec. Gen. Genet. 194 (1984) 79-90.
9. [9] J. Cairns, P.L. Foster, Adaptive reversion of a frameshift mutation in Escherichia coli, Genetics 128 (1991) 695-701.
10. [10] P.L. Foster, Nonadaptive mutations occur on the F′ episome during adaptive mutation conditions in Escherichia coli, J. Bacteriol. 179 (1997) 1550-1554.
11. [11] J. Torkelson, R.S. Harris, M.-J. Lombardo, J. Nagendran, C. Thulin, S.M. Rosenberg, Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation, EMBO J. 16 (1997) 3303-3311.
12. [12] G.W. Grigg, J. Stuckey, The reversible suppression of stationary phase mutation in Escherichia coli by caffeine, Genetics 53 (1966) 823-834.
13. [13] P.L. Foster, Adaptive mutation: the uses of adversity, Annu. Rev. Microbiol. 47 (1993) 467-504.
14. [14] E.M. Witkin, E.I. Farquharson, Enhancement and diminution of ultraviolet light-initiated mutagenesis by post-treatment with caffeine in Escherichia coli, in: G.E.W. Wolstenholme, M. O'Connor (Eds.), Mutation as Cellular Process, Churchill, London, 1969, pp. 36-49.
15. [15] R.S. Harris, S. Longerich, S.M. Rosenberg, Recombination in adaptive mutation, Science 264 (1994) 258-260.
16. [16] P.L. Foster, J.M. Trimarchi, Adaptive reversion of a episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation, Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 5487-5490.
17. [17] J.P. Radicella, P.U. Park, M.S. Fox, Adaptive mutation in Escherichia coli: a role for conjugation, Science 268 (1995) 418-420.
18. [18] T. Galitski, J.R. Roth, Evidence that F plasmid transfer replication underlies apparent adaptive mutation, Science 268 (1995) 421-423.
19. [19] S.M. Rosenberg, R.S. Harris, S. Longerich, A.M. Galloway, Recombination-dependent mutation in non-dividing cells, Mut. Res. 350 (1996) 69-76.
20. [20] P. Foster, Adaptive mutation: Has the unicorn landed?, Genetics (1998) in press.
21. - strain of Escherichia coli during selection for lactose utilization, Genetics 138 (1994) 253-261.
22. [22] B.G. Hall, Spontaneous point mutations that occur more often when advantageous than when neutral, Genetics 126 (1990) 5-16.
23. [23] B. Demple, L. Harrison, Repair of oxidative damage to DNA: enzymology and biology, Ann. Rev. Biochem. 63 (1994) 915-948.
24. [24] E. van den Akker, J.T. Lutgerink, M.V.M. Lafleur, H. Joenje, J. Retel, The formation of one-G deletions as a consequence of singlet-oxygen-induced DNA damage, Mut. Res. 309 (1994) 45-52.
25. 6-methylguanine DNA repair methyltransferase, J. Bacteriol. 173 (1991) 2068-2076.
26. [26] P.L. Foster, J. Cairns, Mechanisms of directed mutation, Genetics 131 (1992) 783-789.
27. 6-alkylguanine-DNA alkyltransferase-proficient and deficient Escherichia coli, Mutagenesis (1998) in press.
28. [28] C. Cupples, J. Miller, A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions, Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 5345-5349.
29. [29] W.J. Mackay, S. Man, L.D. Samson, DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli, J. Bacteriol. 176 (1994) 3224-3230.
30. [30] P. Taverna, B. Sedgwick, Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli, J. Bacteriol. 178 (1996) 5105-5111.
31. [31] B.A. Bridges, Starvation-associated mutation in Escherichia coli: a spontaneous lesion hypothesis for 'directed' mutation, Mutation Res. 307 (1994) 149-156.
32. [32] M.J. Prival, T.A. Cebula, Sequence analysis of mutations arising during prolonged starvation of Salmonella typhimurium, Genetics 132 (1992) 303-310.
33. [33] B.G. Hall, Spectrum of mutations that occur under selective and non-selective conditions in E. coli, Genetica 84 (1991) 73-76.
34. [34] L. Kasak, R. Horak, M. Kivisaar, Promoter-creating mutations in Pseudomonas putida: a model system for the study of mutation in starving bacteria, Proc. Natl. Acad. Sci. U.S.A. 94 (1997) 3134-3139.
35. [35] J.W. Drake, Spontaneous mutations accumulating in bacteriophage T4 in the complete absence of DNA replication, Proc. Natl. Acad. Sci. U.S.A. 55 (1966) 506-512.
36. [36] R.H. Baltz, P.M. Bingham, J.W. Drake, Heat mutagenesis in bacteriophage T4: the transition pathway, Proc. Natl. Acad. Sci. U.S.A. 73 (1976) 1269-1273.
37. [37] P.M. Bingham, R.H. Baltz, L.S. Ripley, J.W. Drake, Heat mutagenesis in bacteriophage T4: the transversion pathway, Proc. Natl. Acad. Sci. U.S.A. 73 (1976) 4159-4163.
38. [38] M.C. Kricker, J.W. Drake, Heat mutagenesis in bacteriophage T4: another walk down the transversion pathway, J. Bacteriol. 172 (1990) 3037-3039.
39. [39] B.N. Ames, L.S. Gold, Endogenous mutagens and the causes of aging and cancer, Mut. Res. 250 (1991) 3-16.
40. [40] M.K. Shigenaga, T.M. Hagen, B.N. Ames, Oxidative damage and mitochondrial decay in aging, Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 10771-10778.
41. [41] Y. Kuchino, F. Mori, H. Kasai, H. Inoue, S. Iwai, K. Miura, E. Ohtsuka, S. Nishimura, Misreading of DNA templates containing 8-hydroxydeoxyguanosine at the modified base and at adjacent residues, Nature 327 (1987) 77-79.
42. [42] M.L. Wood, M. Dizdaroglu, E. Gajewski, J.M. Essigman, Mechanistic studies of ionizing radiation and oxidative mutagenesis: Genetic effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique site in a viral genome, Biochemistry 29 (1990) 7024-7032.
43. [43] S. Shibutani, M. Takeshita, A.P. Grollman, Insertion of specific bases during DNA synthesis past the oxidation damaged base 8-oxoG, Nature 349 (1991) 431-434.
44. [44] M. Moriya, A.P. Grollman, Mutations in the mutY gene of Escherichia coli enhance the frequency of targeted G:CØT:A transversions induced by a single 8-oxoguanine residue in single-stranded DNA, Molec. Gen. Genet. 239 (1993) 72-76.
45. [45] K.C. Cheng, D.S. Cahill, H. Kasai, L.A. Loeb, S. Nishimura, 8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes GT and AC substitutions, J. Biol. Chem. 267 (1992) 166-172.
46. [46] B.A. Bridges, M. Sekiguchi, T. Tajiri, Effect of mutY and mutM/fpg-1 mutations on starvation-associated mutation in Escherichia coli: implications for the role of 7,8-dihydro-8-oxoguanine, Molec. Gen. Genet. 251 (1996) 352-357.
47. [47] B.A. Bridges, mutY 'directs' mutation?, Nature 375 (1995) 741.
48. [48] B.A. Bridges, A.R. Timms, Mutation in Escherichia coli under starvation conditions: a new pathway leading to small deletions in strains defective in mismatch correction, EMBO J. 16 (1997) 3349-3356.
49. [49] L. Benov, I. Fridovich, The rate of adaptive mutagenesis in Escherichia coli is enhanced by oxygen (superoxide), Mut. Res. 357 (1996) 231-236.
50. [50] A. Eisenstark, M.J. Calcutt, M. Becker-Hapak, A. Ivanova, Role of Escherichia coli rpoS and associated genes in defense against oxidative damage, Free Radical Biol. Med. 21 (1996) 975-993.
51. [51] M. Almiron, A.J. Link, D. Furlong, R. Kolter, A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli, Gen. Dev. 6 (1992) 2646-2654.
52. [52] A. Martinez, R. Kolter, Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps, J. Bacteriol. 179 (1997) 5188-5194.
53. [53] G.W. Burton, K.U. Ingold, β-carotene: an unusual type of lipid antioxidant, Science 224 (1984) 569-573.
54. [54] R.W. Tuveson, G. Sandmann, Protection by cloned carotenoid genes expressed in Escherichia coli against phototoxic molecules activated by near-ultraviolet light, Meth. Enzymol. 214 (1993) 323-330.
55. [55] M. Becker-Hapak, E. Troxtel, J. Hoerter, A. Eisenstark, RpoS dependent overexpression of carotenoids from Erwinia herbicola in OxyR deficient Escherichia coli, Biochem. Biophys. Res. Commun. 239 (1997) 305-309.
56. [56] J. Piette, Mutagenic and genotoxic properties of singlet oxygen, Photochem. Photobiol. 4 (1990) 335-339.
57. [57] H. Joenje, V.M. Lafleur, J. Retel, Biological consequences of oxidative DNA damage, in: C. Vigo-Pelfrey (Ed.), Membrane lipid oxidation, CRC Press, Boca Raton, 1991, pp. 87-113.
58. [58] B.A. Lindig, M.A.J. Rodgers, Rate parameters for the quenching of singlet oxygen by water-soluble and lipid-soluble substrates in aqueous and micellar systems, Photochem. Photobiol. 33 (1981) 627-634.
59. [59] W.A. Pryor, Oxy-radicals and related species: their formation, lifetimes, and reactions, Ann. Rev. Physiol. 48 (1986) 657-667.
60. [60] E.C. Friedberg, G.C. Walker, W. Siede, DNA repair and Mutagenesis, ASM Press, Washington, USA, 1995.
61. [61] B.A. Bridges, Spontaneous mutation in stationary-phase Escherichia coli WP2 carrying various DNA repair alleles, Mut. Res. 302 (1993) 173-176.
62. [62] F. Taddei, I. Matic, M. Radman, cAMP-dependent SOS induction and mutagenesis in resting bacterial populations, Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 11736-11740.
63. [63] P.L. Foster, Directed mutation: between unicorns and goats, J. Bacteriol. 174 (1992) 1711-1716.
64. [64] B.G. Hall, Genetics of selection-induced mutations: I. uvrA, uvrB, uvrC and uvrD are selection-induced specific mutator loci, J. Mol. Evol. 40 (1995) 86-93.
65. [65] B.A. Bridges, Mutation in resting cells: the role of endogenous DNA damage, in: T. Lindahl (Ed.), Genetic instability in cancer, ICRF/Cold Spring Harbor Press, 1996, pp. 155-167.
66. [66] R. Kolter, D.A. Siegele, A. Tormo, The stationary phase of the bacterial life cycle, Ann. Rev. Microbiol. 47 (1993) 855-874.
67. [67] B.A. Bridges, Starvation-associated mutation in Escherichia coli strains defective in transcription repair coupling factor, Mutation Res. 329 (1995) 49-56.
68. [68] B.A. Bridges, Elevated mutation rate in mutT bacteria during starvation: evidence of DNA turnover?, J. Bacteriol. 178 (1996) 2709-2711.
69. [69] H. Maki, M. Sekiguchi, MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis, Nature 355 (1992) 273-275.
70. [70] A.R. Timms, B.A. Bridges, Reversion of the tyrosine ochre strain Escherchia coli WU3610 under starvation conditions depends on a new gene tas, Genetics (1998) in press.
71. [71] R. Jayaraman, Leakiness of genetic markers and susceptibility to post-plating mutagenesis in Escherichia coli, J. Genet. 74 (1995) 85-97.
72. [72] T. Galitski, J.R. Roth, A search for a general phenomenon of adaptive mutability, Genetics 143 (1996) 645-659.
73. [73] S.-R. Kim, G. Maenhaut-Michel, M. Yamada, Y. Yamamoto, K. Matsui, T. Sofuni, T. Nohmi, H. Ohmori, Multiple pathways for SOS-induced mutagenesis in Escherichia coli: An overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA, Proc. Natl. Acad. Sci. U.S.A. 94 (1997) 13792-13797.
74. [74] L. Boe, Mechanism for induction of adaptive mutations in Escherichia coli, Molec. Microbiol. 4 (1990) 597-601.
75. [75] M. Reddy, J. Gowrishankar, A genetic strategy to demonstrate the occurrence of spontaneous mutations in non-dividing cells within colonies of Escherichia coli, Genetics (1997) in press.
76. [76] P.L. Foster, G. Gudmundsson, J.M. Trimarchi, H. Cai, M.F. Goodman, Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 7951-7955.
77. [77] P.L. Foster, J.M. Trimarchi, R.A. Maurer, Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli, Genetics 142 (1996) 25-37.
78. [78] R.S. Harris, G. Feng, K.J. Ross, R. Sidhu, C. Thulin, S. Longerich, S.K. Szigety, M.E. Winkler, S.M. Rosenberg, Mismatch repair protein MutL becomes limiting during stationary-phase mutation, Gen. Dev. 11 (1997) 2426-2437.
79. [79] R.S. Harris, H.J. Bull, S.M. Rosenberg, A direct role of DNA polymerase III in adaptive reversion of a frameshift mutation in Escherichia coli, Mutation Res. 375 (1997) 19-24.