-
1
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
Akashi, H. 1995. Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139:1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
2
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
-
Akashi, H., and S. W. Schaeffer. 1997. Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. Genetics 146:295-307.
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. H. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0021810948
-
The mosaic genome of warm-blooded vertebrates
-
Bernardi, G., B. Olofsson, J. Filipski, M. Zerial, J. Salinas, G. Cuny, M. Meunier-Rotival, and F. Rodier. 1985. The mosaic genome of warm-blooded vertebrates. Science 228:953-958.
-
(1985)
Science
, vol.228
, pp. 953-958
-
-
Bernardi, G.1
Olofsson, B.2
Filipski, J.3
Zerial, M.4
Salinas, J.5
Cuny, G.6
Meunier-Rotival, M.7
Rodier, F.8
-
5
-
-
0030870833
-
Mutation pattern variation among regions of the primate genome
-
Casane, D., S. Boissinot, B. H. Chang, L. C. Shimmin, and W.-H. Li. 1997. Mutation pattern variation among regions of the primate genome. J. Mol. Evol. 45:216-226.
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 216-226
-
-
Casane, D.1
Boissinot, S.2
Chang, B.H.3
Shimmin, L.C.4
Li, W.-H.5
-
6
-
-
0035130163
-
Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
-
Chen, F. C., and W.-H. Li. 2001. Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68:444-456.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 444-456
-
-
Chen, F.C.1
Li, W.-H.2
-
7
-
-
0036959203
-
Vanishing GC-rich isochores in mammalian genomes
-
in press
-
Duret, L., M. Semon, G. Piganeau, D. Mouchiroud, and N. Galtier. 2002. Vanishing GC-rich isochores in mammalian genomes. Genetics (in press).
-
(2002)
Genetics
-
-
Duret, L.1
Semon, M.2
Piganeau, G.3
Mouchiroud, D.4
Galtier, N.5
-
8
-
-
0036094907
-
Genomewide comparison of DNA sequences between humans and chimpanzees
-
Ebersberger, I., D. Metzler, C. Schwarz, and S. Paabo. 2002. Genomewide comparison of DNA sequences between humans and chimpanzees. Am. J. Hum. Genet. 70:1490-1497.
-
(2002)
Am. J. Hum. Genet.
, vol.70
, pp. 1490-1497
-
-
Ebersberger, I.1
Metzler, D.2
Schwarz, C.3
Paabo, S.4
-
10
-
-
0031303811
-
Differentiating between selection and mutation bias
-
-. 1997. Differentiating between selection and mutation bias. Genetics 147:1983-1987.
-
(1997)
Genetics
, vol.147
, pp. 1983-1987
-
-
-
11
-
-
0032434101
-
Problems with parsimony in sequences of biased base composition
-
-. 1998. Problems with parsimony in sequences of biased base composition. J. Mol. Evol. 47:686-690.
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 686-690
-
-
-
12
-
-
0033018384
-
Evidence of selection on silent site base composition in mammals: Potential implications for the evolution of isochores and junk DNA
-
-. 1999. Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA. Genetics 152:675-683.
-
(1999)
Genetics
, vol.152
, pp. 675-683
-
-
-
14
-
-
0024961828
-
Chromosome localization-dependent compositional bias of point mutations in Alu repetitive sequences
-
Filipski, J., J. Salinas, and F. Rodier. 1989. Chromosome localization-dependent compositional bias of point mutations in Alu repetitive sequences. J. Mol. Biol. 206:563-566.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 563-566
-
-
Filipski, J.1
Salinas, J.2
Rodier, F.3
-
15
-
-
0037016456
-
Construction and analysis of a human-chimpanzee comparative clone map
-
17 co-authors
-
Fujiyama, A., H. Watanabe, A. Toyoda, et al. (17 co-authors). 2002. Construction and analysis of a human-chimpanzee comparative clone map. Science 295:131-134.
-
(2002)
Science
, vol.295
, pp. 131-134
-
-
Fujiyama, A.1
Watanabe, H.2
Toyoda, A.3
-
16
-
-
0034989085
-
Local rates of recombination are positively correlated with GC content in the human genome
-
Fullerton, S. M., A. Bernardo Carvalho, and A. G. Clark. 2001. Local rates of recombination are positively correlated with GC content in the human genome. Mol. Biol. Evol. 18:1139-1142.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1139-1142
-
-
Fullerton, S.M.1
Bernardo Carvalho, A.2
Clark, A.G.3
-
17
-
-
0031829758
-
Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
-
Galtier, N., and M. Gouy. 1998. Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. Mol. Biol. Evol. 15:871-879.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 871-879
-
-
Galtier, N.1
Gouy, M.2
-
18
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
248 co-authors
-
Lander, E. S., L. M. Linton, B. Birren, et al. (248 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
19
-
-
0036640951
-
Human SNP variability and mutation rate are higher in regions of high recombination
-
Lercher, M. J., and L. D. Hurst. 2002. Human SNP variability and mutation rate are higher in regions of high recombination. Trends Genet. 18:337-340.
-
(2002)
Trends Genet.
, vol.18
, pp. 337-340
-
-
Lercher, M.J.1
Hurst, L.D.2
-
20
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald, J. H., and M. Kreitman. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
21
-
-
0034520771
-
Assessment of compositional heterogeneity within and between eukaryotic genomes
-
Nekrutenko, A., and W.-H. Li. 2000. Assessment of compositional heterogeneity within and between eukaryotic genomes. Genome Res. 10:1986-1995.
-
(2000)
Genome Res.
, vol.10
, pp. 1986-1995
-
-
Nekrutenko, A.1
Li, W.-H.2
-
22
-
-
0036133007
-
Expected relationship between the silent substitution rate and the GC content: Implications for the evolution of isochores
-
Piganeau, G., D. Mouchiroud, L. Duret, and C. Gautier. 2002. Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores. J. Mol. Evol. 54:129-133.
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 129-133
-
-
Piganeau, G.1
Mouchiroud, D.2
Duret, L.3
Gautier, C.4
-
23
-
-
0035162594
-
RefSeq and LocusLink: NCBI gene-centered resources
-
Pruitt, K. D., and D. R. Maglott. 2001. RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res. 29:137-140.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 137-140
-
-
Pruitt, K.D.1
Maglott, D.R.2
-
24
-
-
0034993993
-
Synonymous codon bias is not caused by mutation bias in G+C-rich genes in humans
-
Smith, N. G. C., and A. Eyre-Walker. 2001. Synonymous codon bias is not caused by mutation bias in G+C-rich genes in humans. Mol. Biol. Evol. 18:982-986.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 982-986
-
-
Smith, N.G.C.1
Eyre-Walker, A.2
-
25
-
-
0036737595
-
Deterministic mutation rate variation in the human genome
-
Smith, N. G. C., M. T. Webster, and H. Ellegren. 2002. Deterministic mutation rate variation in the human genome. Genome Res. 12:1350-1356.
-
(2002)
Genome Res.
, vol.12
, pp. 1350-1356
-
-
Smith, N.G.C.1
Webster, M.T.2
Ellegren, H.3
-
26
-
-
0023991945
-
Directional mutation pressure and neutral molecular evolution
-
Sueoka N. 1988. Directional mutation pressure and neutral molecular evolution. Proc. Natl. Acad. Sci. USA 85:2653-2657.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2653-2657
-
-
Sueoka, N.1
-
27
-
-
0027218267
-
Directional mutation pressure, mutator mutations, and dynamics of molecular evolution
-
-. 1993. Directional mutation pressure, mutator mutations, and dynamics of molecular evolution. J. Mol. Evol. 37:137-153.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 137-153
-
-
-
28
-
-
0027968068
-
ClustalW-improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. ClustalW-improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
29
-
-
0037173031
-
Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments
-
Webster, M. T., N. G. C. Smith, and H. Ellegren. 2002. Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments. Proc. Natl. Acad. Sci. USA 99:8748-8753.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8748-8753
-
-
Webster, M.T.1
Smith, N.G.C.2
Ellegren, H.3
-
30
-
-
0035142523
-
Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1
-
Yu, N., Y. X. Fu, N. Sambuughin, M. Ramsay, T. Jenkins, E. Leskinen, L. Patthy, L. B. Jorde, T. Kuromori, and W.-H. Li. 2001. Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1. Mol. Biol. Evol. 18:214-222.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 214-222
-
-
Yu, N.1
Fu, Y.X.2
Sambuughin, N.3
Ramsay, M.4
Jenkins, T.5
Leskinen, E.6
Patthy, L.7
Jorde, L.B.8
Kuromori, T.9
Li, W.-H.10
-
31
-
-
12944288236
-
Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22
-
13 co-authors
-
Zhao, Z., L. Jin, Y. X. Fu, et al. (13 co-authors). 2000. Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22. Proc. Natl. Acad. Sci. USA 97:11354-11358.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 11354-11358
-
-
Zhao, Z.1
Jin, L.2
Fu, Y.X.3
|