Comparative genome analysis of proteases, oligopeptide uptake and secretion systems in Mycoplasma spp

Genetics and Molecular Biology

Volumn 30, Issue SUPPL. 1, 2007, Pages 225-229

  Staats, Charley Christian ^a   Boldo, Juliano ^a   Broetto, Leonardo ^a   Vainstein, Marilene ^a   Schrank, Augusto ^a  

^a FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

Author keywords

Minimal genomes; Mycoplasma; Proteases; Secretion systems

Indexed keywords

OLIGOPEPTIDE; PROTEINASE;

ARTICLE; BACTERIAL GENETICS; BACTERIAL GENOME; BACTERIAL GROWTH; BIOSYNTHESIS; CONTROLLED STUDY; GENETIC ANALYSIS; HOST; IN VITRO STUDY; METABOLITE; MYCOPLASMA; NONHUMAN; NUTRITIONAL REQUIREMENT; PATHOGENICITY; PROTEIN DEGRADATION; PROTEIN METABOLISM; PROTEIN SECRETION; SURVIVAL;

MYCOPLASMA; MYCOPLASMATALES;

EID: 34848819959     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/s1415-47572007000200009     Document Type: Article

References (37)

1. Akiyama Y and Ito K (2003) Reconstitution of membrane proteolysis by FtsH. J Biol Chem 278:18146-18153.
2. Altschul SF, Gish W, Miller W, Myers EW and Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
3. Catrein I, Herrmann R, Bosserhoff A and Ruppert T (2005) Experimental proof for a signal peptidase I like activity in Mycoplasma pneumoniae, but absence of a gene encoding a conserved bacterial type I SPase. FEBS J 272:2892-2900.
4. Chang PC and Lee YH (1992) Extracellular autoprocessing of a metalloprotease from Streptomyces cacaoi. J Biol Chem 267:3952-3958.
5. Dave JA, Gey van Pittius NC, Beyers AD, Ehlers MR and Brown GD (2002) Mycosin-1, a subtilisin-like serine protease of Mycobacterium tuberculosis, is cell wall-associated and expressed during infection of macrophages. BMC Microbiol 2:30. http://www.biomedcentral.com/ bmcmicrobiol/
6. Detmers FJ, Kunji ER, Lanfermeijer FC, Poolman B and Konings WN (1998) Kinetics and specificity of peptide uptake by the oligopeptide transport system of Lactococcus lactis. Biochem 37:16671-16679.
7. Djordjevic SP, Cordwell SJ, Djordjevic MA, Wilton J and Minion FC (2004) Proteolytic processing of the Mycoplasma hyopneumoniae cilium adhesin. Infect Immun 72:2791-2802.
8. Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kenavage AR, Sutton G, Kelley JM, et al. (1995) The minimal gene complement of Mycoplasma genitalium. Science 270:397-403.
9. Fu GK, Smith MJ and Markovitz DM (1997) Bacterial protease Lon is a site-specific DNA-binding protein. J Biol Chem 272:534-538.
10. Henrich B, Hopfe M, Kitzerow A and Hadding U (1999) The adherence-associated lipoprotein F100, encoded by an opp operon structure, functions as the oligopeptide-binding domain OppA of a putative oligopeptide transport system in Mycoplasma hominis. J Bacteriol 181:4873-4978.
11. Herman C, Prakash S, Lu CZ, Matouschek A and Gross CA (2003) Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 11:659-669.
12. Himmelreich R, Hilbert H, Plagens H, Pirkl E, Li BC and Herrmann R (1996) Complete sequence analysis of the genome of the bactium Mycoplasma pneumoniae. Nucleic Acids Res 24:4420-4449.
13. Hsu T, Artiushin S and Minion FC (1997) Cloning and functional analysis of the P97 swine cilium adhesin gene of Mycoplasma hyopneumoniae. J Bacteriol 179:1317-1323.
14. Ito K and Akiyama Y (2005) Cellular functions, mechanism of action, and regulation of FtsH protease. Annu Rev Microbiol 59:211-231
15. Jenal U and Hengge-Aronis R (2003) Regulation by proteolysis in bacterial cells. Curr Opin Microbiol 6:163-172.
16. Knight CG, Dando PM and Barrett AJ (1995) Thimet oligopeptidase specificity: Evidence of preferential cleavage near the C-terminus and product inhibition from kinetic analysis of peptide hydrolysis. Biochem J 308:145-150.
17. Kortt AA and S art DJ (1994) Properties of the extracellular acidic proteases of Dichelobacter nodosus. Stability and specificity of peptide bond cleavage. Biochem Mol Biol Int 34:1167-1116.
18. LeDeaux JR, Solomon JM and Grossman AD (1997) Analysis of non-polar deletion mutations in the genes of the spoOK (opp) operon of Bacillus subtilis. FEMS Microbiol Lett 153:63-69.
19. Maeda H and Yamamoto T (1996) Pathogenic mechanisms induced by microbial proteases in microbial infections. Biol Chem Hoppe Seyler 377:217-226.
20. Mellors A and Surtherland DR (1994) Tools to cleave glycoproteins. Trends Biotechnol 12:15-18.
21. Morales P, Fernandez-Garcia E, Gaya P, Medina M and Nunez M (2001) Hydrolysis of caseins and formation of hydrophilic and hydrophobic peptides by wild Lactococcus lactis strains isolated frcm raw ewes' milk cheese. J Appl Microbiol 91:907-915
22. Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, et al. (2005) InterPro, progress and status in 2005. Nucleic Acids Res 33:D201-D205.
23. Myara I, Cosson C, Moatti N and Lemonnier A (1994) Human kidney prolidase-purification, preincubation properties and immunological reactivity. Int J Biochem 26:207-214.
24. Nagy I, Banerjee T, Tamura T, Schoofs G, Gils A, Proost P, Tamura N, Baumeister W and De Mot R (2003) Characterization of a novel intracellular endopeptidase of the alpha/beta hydrolase family from Streptomyces coelicolor A3(2). J Bacteriol 185:496-503.
25. Paetzel M, Karla A, Strynadka NC and Dalbey RE (2002) Signal peptidases. Chem Rev 102:4549-4580.
26. Rawlings ND, Tolle DP and Barrett AJ (2004) MEROPS: The peptidase database. Nucleic Acids Res 32:D160-D164.
27. Razin S, Yogev D and Naot Y (1998) Molecular biology and pathogenicity of mycoplasmas. Microbiol Mol Biol Rev 62:1094-1156.
28. Stephenson K (2005) Sec-dependent protein translocation across biological membranes: Evolutionary conservation of an essential protein transport pathway. Mol Membr Biol 22:17-28.
29. Takaya A, Tomoyasu T, Tokumitsu A, Morioka M and Yamamoto T (2002) The ATP-dependent Lon protease of Salmonella enterica serovar Typhimurium regulates invasion and expression of genes carried on Salmonella pathogenicity island 1. J Bacteriol 184:224-232.
30. Tan PS, Poolman B and Konings WN (1993) Proteolytic enzymes of Lactococcus lactis. J Dairy Res 60:269-286.
31. Tjalsma H, Bolhuis A, Jongbloed JDH, Bron S and van Dijl JM (2000) Signal peptide-dependent protein transport in Bacillus subtilis: A genome-based survey of the secretome. Microbiol Mol Biol Rev 64:515-547.
32. van Ham RC, Kamerbeek J, Palacios C, Rausell C, Abascal F, Bastolla U, Fernandez JM, Jimenez L, Postigo M, Silva FJ, et al. (2003) Reductive genome evolution in Buchnera aphidicola. Proc Natl Acad Sci USA 100:581-586.
33. van Wely KHM, Swaving J, Freudl R and Driessen AJM (2001). Translocation of proteins across the cell envelope of Gram-positive bacteria. FEMS Microbiol Rev 25:437-454.
34. Vasconcelos AT, Ferreira HB, Bizarro CV, Bonatto SL, Carvalho MO, Pinto PM, Almeida DF, Almeida LG, Almeida R, Alves-Filho L, et al. (2005) Swine and poultry pathogens: The complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. J Bacteriol 187:5568-5577.
35. Wang XG, Kidder JM, Scagliotti JP, Klempner MS, Noring R and Hu LT (2004) Analysis of differences in the functional properties of the substrate binding proteins of the Borrelia burgdorferi oligopeptide permease (opp) operon. J Bacteriol 186:51-60.
36. Wong P and Houry WA (2004) Chaperone networks in bacteria: Analysis of protein homeostasis in minimal cells. J Struct Biol 146:79-89.
37. Wu WF, Zhou Y and Gottesman S (1999) Redundant in vivo proteolytic activities of Escherichia coli Lon and the ClpYQ (HsIUV) protease. J Bacteriol 181:3681-3687.