-
3
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
de Jong, H. (2002) Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol., 9, 67-103.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 67-103
-
-
De Jong, H.1
-
4
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J.L., Iyer, V.R. and Brown, P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
Derisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
5
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellman, P.T., Brown, P.O. and Botstein, D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
6
-
-
0036081122
-
LIGAND: Database of chemical compounds and reactions in biological pathways
-
Goto, S., Okuno, Y., Hattori, M., Nishioka, T. and Kanehisa, M. (2002) LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acid Res., 30, 402-404.
-
(2002)
Nucleic Acid Res.
, vol.30
, pp. 402-404
-
-
Goto, S.1
Okuno, Y.2
Hattori, M.3
Nishioka, T.4
Kanehisa, M.5
-
7
-
-
0038014879
-
Coclustering of biological networks and gene expression data
-
Hanisch, D., Zien, A., Zimmer, R. and Lengauer, T. (2002) Coclustering of biological networks and gene expression data. Bioinformatics, 18, 145S-154S.
-
(2002)
Bioinformatics
, vol.18
-
-
Hanisch, D.1
Zien, A.2
Zimmer, R.3
Lengauer, T.4
-
8
-
-
0034048878
-
A discriminative framework for detecting remote protein homologies
-
Jaakkola, T., Diekhans, M. and Haussler, D. (2000) A discriminative framework for detecting remote protein homologies. J. Comput. Biol., 7, 95-114.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 95-114
-
-
Jaakkola, T.1
Diekhans, M.2
Haussler, D.3
-
9
-
-
0036081062
-
The KEGG databases at GenomeNet
-
Kanehisa, M., Goto, S., Kawashima, S. and Nakaya, A. (2002) The KEGG databases at GenomeNet. Nucleic Acid Res., 30, 42-46.
-
(2002)
Nucleic Acid Res.
, vol.30
, pp. 42-46
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Nakaya, A.4
-
10
-
-
0041775676
-
Diffusion kernels on graphs and other discrete input
-
Kondor, R.I. and Lafferty, J. (2002) Diffusion kernels on graphs and other discrete input. In Proceedings of ICML 2002. pp. 315-322.
-
(2002)
Proceedings of ICML 2002
, pp. 315-322
-
-
Kondor, R.I.1
Lafferty, J.2
-
11
-
-
24744464400
-
Promoter region-based classification of genes
-
Pavlidis, P., Furey, T.S., Liberto, M., Haussler, D. and Grundy, W.N. (2001) Promoter region-based classification of genes. In Pacific Symposium on Biocomputing. pp. 139-150.
-
(2001)
Pacific Symposium on Biocomputing
, pp. 139-150
-
-
Pavlidis, P.1
Furey, T.S.2
Liberto, M.3
Haussler, D.4
Grundy, W.N.5
-
12
-
-
0003408420
-
-
MIT Press, Cambridge, MA
-
Schölkopf, B. and Smola, A.J. (2002) Learning with Kernels: Support Vector Machines, Regularisation, Optimization, and Beyond. MIT Press, Cambridge, MA.
-
(2002)
Learning with Kernels: Support Vector Machines, Regularisation, Optimization, and Beyond
-
-
Schölkopf, B.1
Smola, A.J.2
-
13
-
-
0035175010
-
The Stanford Microarray Database
-
Sherlock, G., Hernandez-Boussard, T., Kasarskis, A., Binkley, G., Matese, J., Dwight, S., Kaloper, M., Weng, S., Jin, H., Ball, C., Eisen, M. and Spellman, P. (2001) The Stanford Microarray Database. Nucleic Acid Res., 29, 152-155.
-
(2001)
Nucleic Acid Res.
, vol.29
, pp. 152-155
-
-
Sherlock, G.1
Hernandez-Boussard, T.2
Kasarskis, A.3
Binkley, G.4
Matese, J.5
Dwight, S.6
Kaloper, M.7
Weng, S.8
Jin, H.9
Ball, C.10
Eisen, M.11
Spellman, P.12
-
14
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P.T., Sherlock, G., Zhang, M.Q., Iyer, V.R., Anders, K., Eisen, M.B., Brown, P.O., Botstein, D. and Futcher, B. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
15
-
-
0034960264
-
Missing value estimation methods for NA microarrays
-
Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Botstein, D. and Altman, R.B. (2001) Missing value estimation methods for NA microarrays. Bioinformatics, 17, 520-525.
-
(2001)
Bioinformatics
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
16
-
-
75949121397
-
Application of regulatory sequence analysis and metabolic network analysis to the interpretation of gene expression data
-
van Helden, J., Gilbert, D., Wemisch, L., Schroeder, K. and Wodak, S. (2000) Application of regulatory sequence analysis and metabolic network analysis to the interpretation of gene expression data. Lecture Notes in Computer Science, 2066, 155-172.
-
(2000)
Lecture Notes in Computer Science
, vol.2066
, pp. 155-172
-
-
Van Helden, J.1
Gilbert, D.2
Wemisch, L.3
Schroeder, K.4
Wodak, S.5
-
17
-
-
11244331236
-
A tree kernel to analyze phylogenetic profiles
-
Vert, J.-P. (2002) A tree kernel to analyze phylogenetic profiles. Bioinformatics, 18, S276-S284.
-
(2002)
Bioinformatics
, vol.18
-
-
Vert, J.-P.1
-
19
-
-
4444314854
-
Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis
-
To appear
-
Yamanishi, Y., Vert, J.-P., Nakaya, A. and Kanehisa, M. (2003) Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis. Bioinformatics, To appear.
-
(2003)
Bioinformatics
-
-
Yamanishi, Y.1
Vert, J.-P.2
Nakaya, A.3
Kanehisa, M.4
-
20
-
-
24744470537
-
Analysis of gene expression data with pathway scores
-
R.A. et al., (ed.). AAAI Press
-
Zien, A., Küffner, R., Zimmer, R. and Lengauer, T. (2000) Analysis of gene expression data with pathway scores. In R.A. et al., (ed.), Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology. AAAI Press, pp. 114-120.
-
(2000)
Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology
, pp. 114-120
-
-
Zien, A.1
Küffner, R.2
Zimmer, R.3
Lengauer, T.4
|