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Volumn 2066, Issue , 2001, Pages 147-163

Application of regulatory sequence analysis and metabolic network analysis to the interpretation of gene expression data

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; BIOLOGY; CATALYSIS; GENES; INFORMATION SCIENCE; METABOLISM; YEAST;

EID: 75949121397     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3-540-45727-5_13     Document Type: Conference Paper
Times cited : (15)

References (26)
  • 1
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J.L., Iyer, V.R. and Brown, P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278, 680-6 (1997).
    • (1997) Science , vol.278 , pp. 680-686
    • Derisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 2
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with DNA microarrays
    • Brown, P.O. and Botstein, D. Exploring the new world of the genome with DNA microarrays. Nat Genet 21, 33-7 (1999).
    • (1999) Nat Genet , vol.21 , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 3
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen, M.B. and Brown, P.O. DNA arrays for analysis of gene expression. Methods Enzymol 303, 179-205 (1999).
    • (1999) Methods Enzymol , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 4
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
    • Tamayo, P. et al. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci U S A 96, 2907-12 (1999).
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 2907-2912
    • Tamayo, P.1
  • 5
    • 0034566082 scopus 로고    scopus 로고
    • Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
    • Vilo, J., Brazma, A., Jonassen, I. and Ukkonen, E. Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. ISMB (2000).
    • (2000) ISMB
    • Vilo, J.1    Brazma, A.2    Jonassen, I.3    Ukkonen, E.4
  • 6
    • 0033976586 scopus 로고    scopus 로고
    • TRANSFAC: An integrated system for gene expression regulation
    • Wingender, E. et al. TRANSFAC: An integrated system for gene expression regulation. Nucleic Acids Res 28, 316-319 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 316-319
    • Wingender, E.1
  • 7
    • 0033971476 scopus 로고    scopus 로고
    • RegulonDB (Version 3.0): Transcriptional regulation and operon organization in Escherichia coli K-12
    • Salgado, H. et al. RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res 28, 65-67 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 65-67
    • Salgado, H.1
  • 8
    • 0035291113 scopus 로고    scopus 로고
    • From molecular activities and processes to biological function
    • van Helden, J. et al. From molecular activities and processes to biological function. Briefings in Bioinformatics in press(2001).
    • (2001) Briefings in Bioinformatics in Press
    • Van Helden, J.1
  • 9
    • 0033786867 scopus 로고    scopus 로고
    • Representing and analysing molecular and cellular function using the computer
    • van Helden, J. et al. Representing and analysing molecular and cellular function using the computer. Biol Chem 381, 921-35 (2000).
    • (2000) Biol Chem , vol.381 , pp. 921-935
    • Van Helden, J.1
  • 10
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Spellman, P.T. et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9, 3273-97 (1998).
    • (1998) Mol Biol Cell , vol.9 , pp. 3273-3297
    • Spellman, P.T.1
  • 12
    • 0034564737 scopus 로고    scopus 로고
    • Interactive visualization and exploration of relationships between biological objects
    • Gilbert, D., Schroeder, M. and van Helden, J. Interactive visualization and exploration of relationships between biological objects. Trends in Biotechnology 18, 487-495 (2000).
    • (2000) Trends in Biotechnology , vol.18 , pp. 487-495
    • Gilbert, D.1    Schroeder, M.2    Van Helden, J.3
  • 13
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • van Helden, J., Andre, B. and Collado-Vides, J. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J Mol Biol 281, 827-42 (1998).
    • (1998) J Mol Biol , vol.281 , pp. 827-842
    • Van Helden, J.1    Re, B.2    Collado-Vides, J.3
  • 14
    • 0034656326 scopus 로고    scopus 로고
    • Discovering regulatory elements in noncoding sequences by analysis of spaced dyads
    • van Helden, J., Rios, A.F. and Collado-Vides, J. Discovering regulatory elements in noncoding sequences by analysis of spaced dyads. Nucleic Acids Res 28, 1808-18 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 1808-1818
    • Van Helden, J.1    Rios, A.F.2    Collado-Vides, J.3
  • 15
    • 0032413411 scopus 로고    scopus 로고
    • Predicting gene regulatory elements in silico on a genomic scale
    • Brazma, A., Jonassen, I., Vilo, J. and Ukkonen, E. Predicting gene regulatory elements in silico on a genomic scale. Genome Res 8, 1202-15 (1998).
    • (1998) Genome Res , vol.8 , pp. 1202-1215
    • Brazma, A.1    Jonassen, I.2    Vilo, J.3    Ukkonen, E.4
  • 16
    • 0033081347 scopus 로고    scopus 로고
    • Genomic detection of new yeast pre- mRNA 3’-end-processing signals
    • Graber, J.H., Cantor, C.R., Mohr, S.C. and Smith, T.F. Genomic detection of new yeast pre- mRNA 3’-end-processing signals. Nucleic Acids Res 27, 888-94 (1999).
    • (1999) Nucleic Acids Res , vol.27 , pp. 888-894
    • Graber, J.H.1    Cantor, C.R.2    Mohr, S.C.3    Smith, T.F.4
  • 17
    • 0031902984 scopus 로고    scopus 로고
    • Compound Poisson and Poisson process approximations for occurrences of multiple words in Markov chains
    • Reinert, G. and Schbath, S. Compound Poisson and Poisson process approximations for occurrences of multiple words in Markov chains. J Comput Biol 5, 223-53 (1998).
    • (1998) J Comput Biol , vol.5 , pp. 223-253
    • Reinert, G.1    Schbath, S.2
  • 18
    • 0034651804 scopus 로고    scopus 로고
    • Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals
    • van Helden, J., del Olmo, M. and Perez-Ortin, J.E. Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals. Nucleic Acids Res 28, 1000-10 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 1000-1010
    • Van Helden, J.1    Del Olmo, M.2    Perez-Ortin, J.E.3
  • 19
    • 0033964238 scopus 로고    scopus 로고
    • The EcoCyc and MetaCyc databases
    • Karp, P.D. et al. The EcoCyc and MetaCyc databases. Nucleic Acids Res 28, 56-59 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 56-59
    • Karp, P.D.1
  • 20
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa, M. and Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28, 27-30 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 21
    • 0031457095 scopus 로고    scopus 로고
    • Metabolism of sulfur amino acids in Saccharomyces cerevisiae
    • Thomas, D. and Surdin-Kerjan, Y. Metabolism of sulfur amino acids in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 61, 503-32 (1997).
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 503-532
    • Thomas, D.1    Surdin-Kerjan, Y.2
  • 23
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte, E.M. et al. Detecting protein function and protein-protein interactions from genome sequences. Science 285, 751-3 (1999).
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1
  • 24
    • 0033523854 scopus 로고    scopus 로고
    • A combined algorithm for genome-wide prediction of protein function [see comments]
    • Marcotte, E.M., Pellegrini, M., Thompson, M.J., Yeates, T.O. and Eisenberg, D. A combined algorithm for genome-wide prediction of protein function [see comments]. Nature 402, 83-6 (1999).
    • (1999) Nature , vol.402 , pp. 83-86
    • Marcotte, E.M.1    Pellegrini, M.2    Thompson, M.J.3    Yeates, T.O.4    Eisenberg, D.5
  • 25
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events [see comments]
    • Enright, A.J., Iliopoulos, I., Kyrpides, N.C. and Ouzounis, C.A. Protein interaction maps for complete genomes based on gene fusion events [see comments]. Nature 402, 86-90 (1999).
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 26
    • 0034731822 scopus 로고    scopus 로고
    • A web site for the computational analysis of yeast regulatory sequences
    • van Helden, J., Andre, B. and Collado-Vides, J. A web site for the computational analysis of yeast regulatory sequences. Yeast 16, 177-87 (2000).
    • (2000) Yeast , vol.16 , pp. 177-187
    • Van Helden, J.1    Re, B.2    Collado-Vides, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.