Structural and phylogenetic analysis of Pto-type disease resistance gene candidates in banana

Molecular Genetics and Genomics

Volumn 278, Issue 4, 2007, Pages 443-453

  Peraza Echeverria, Santy ^a   James Kay, Andrew ^a   Canto Canché, Blondy ^a   Castillo Castro, Eduardo ^a  

^a CENTRO DE INVESTIGACIÓN CIENTÍFICA DE YUCATÁN   (Mexico)

Author keywords

Banana; Disease resistance gene; Pto; Serine threonine kinase

Indexed keywords

PROTEIN; PROTEIN SERINE THREONINE KINASE; PTO PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; BANANA; CONTROLLED STUDY; GENE AMPLIFICATION; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN DOMAIN; TOMATO; UNINDEXED SEQUENCE;

AMINO ACID SEQUENCE; EVOLUTION, MOLECULAR; IMMUNITY, NATURAL; MOLECULAR SEQUENCE DATA; MUSA; PHYLOGENY; PLANT DISEASES; PLANT PROTEINS; PROTEIN-SERINE-THREONINE KINASES; SEQUENCE HOMOLOGY;

LYCOPERSICON ESCULENTUM;

EID: 34548740228     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-007-0262-9     Document Type: Article

References (56)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
3. Becker D, Dugdale B, Smith M, Harding R, Dale J (2000) Genetic transformation of Cavendish banana (Musa spp. AAA group) cv 'Grand Nain' via microprojectile bombardment. Plant Cell Rep 19:229-234
4. Bisgrove SR, Simonich MT, Smith NM, Sattler A, Innes RW (1994) A disease resistance gene in Arabidopsis with specificity for two different pathogen avirulence genes. Plant Cell 6:927-933
5. Chen X, Shang J, Chen D, Lei C, Zou Y, Zhai W, Liu G, Xu J, Ling Z, Ma B, Wang Y, Zhao X, Li S, Zhu L (2006) A B-lectin receptor kinase gene conferring rice blast resistance. Plant J 46:794-804
6. Chisholm ST, Coaker G, Day B, Staskawicz BJ (2006) Host-microbe interactions: shaping the evolution of the plant immune response. Cell 124:803-814
7. Collins NC, Webb CA, Seah S, Ellis JG, Hulbert SH, Pryor A (1998) The isolation and mapping of disease resistance gene analogs in maize. Mol Plant Microbe Interact 11:968-978
8. Crooks GE, Hon G, Chandonia JM, Brenner E (2004) WebLogo: a sequence Logo generator. Genome Res 14:1188-1190
9. Dangl JL, Jones JDG (2001) Plant pathogens and integrated defense responses to infection. Nature 411: 826-833
10. Di Gaspero G, Cipriani G (2003) Nucleotide binding site/leucine-rich repeats, Pto-like and receptor-like kinases related to disease resistance in grapevine. Mol Genet Genomics 269:612-623
11. Dolezel J, Dolezelova M, Novak FJ (1994) Flow cytometric estimation of nuclear DNA amount in diploid bananas (Musa acuminata and M. balbisiana). Biol Plant 36:351-357
12. Douchkov D, Nowara D, Zierold U, Schweizer (2005) A high-throughput gene-silencing system for the functional assessment of defense-related genes in barley epidermal cells. Mol Plant Microbe Interact 18:755-761
13. Frederick RD, Thilmony RL, Sessa G, Martin GB (1998) Recognition specificity for the bacterial avirulence protein AvrPto is determined by Thr-204 in the activation loop of the tomato Pto kinase. Mol Cell 2:241-245
14. Gilchrist D.G. (1998) Programmed cell death in plant disease: the purpose and promise of cellular suicide. Annu Rev Phytopathol 36:393-414
15. Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92-100
16. Hammond-Kosack K, Parker J (2003) Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Curr Opin Biotech 14:177-193
17. Hanks SK, Quinn AM, Hunter T (1988) The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. Science 241:42-52
18. Hanks SK, Quinn AM (1991) Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Method Enzymol 200:38-62
19. Hardie DG (1999) Plant protein serine/threonine kinases: classifications and functions. Annu Rev Plant Physiol Plant Mol Biol 50:97-131
20. Hartwell J, Gill A, Nimmo GA, Wilkins MB, Jenkins GI, Nimmo HG (1999) Phosphoenolpyruvate carboxylase kinase is a novel protein kinase regulated at the level of expression. Plant J 20:333-342
21. He ZH, He D, Kohorn BD (1998) Requirement for the induced expression of a cell wall associated receptor kinase for survival during the pathogen response. Plant J 14:55-63
22. Jain SM (2004) Cellular biology and biotechnology including mutation techniques for creation of new useful banana genotypes. In: Jain SM, Swennen R (eds) Banana improvement: cellular, molecular biology, and induced mutations. Science Publishers, USA
23. Jones DR (2000) History of banana breeding. In: Jones DR (eds) Diseases of Banana, Abacá and Enset. CABI, UK, pp 425-434
24. Khanna H, Becker D, Kleidon J, Dale J (2004) Centrifugation assisted Agrobacterium-mediated transformation (CAAT) of embryogenic cell suspensions of banana (Musa spp. Cavendish AAA and Lady finger AAB). Mol Breeding 14:239-252
25. Kim YJ, Lin NC, Martin GB (2002) Two distinct Pseudomonas effector proteins interact with the Pto kinase and activate plant immunity. Cell 109:589-598
26. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
27. López C, Acosta I, Jara C, Pedraza F, Gaitan-Solis E, Gallego G, Beebe S, Tohme J (2003) Identifying resistance gene analogs associated with resistance to different pathogens in common bean. Phytopathology 93:88-95
28. Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wu T, Earle ED, Tanksley SD (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262:1432-1435
29. Martin GB, Bogdanove AJ, Sessa G (2003) Understanding the function of plant disease resistance proteins. Annu Rev Plant Biol 54:23-61
30. Martínez-Zamora MG, Castagnaro AP, Diaz-Ricci JC (2004) Isolation and diversity analysis of resistance gene analogues (RGAs) from cultivated and wild strawberries. Mol Genet Genomics 272:480-487
31. May G, Afza R, Mason H, Wiecko A, Novak F, Arntzen C (1995) Generation of transgenic banana (Musa acuminata) plants via Agrobacterium-mediated transformation. Bio/Technology 13:486-492
32. McDowell JM, Dhandaydham M, Long TA, Aarts MGM, Goff S, Holub EB, Dangl JL (1998) Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell 10:1861-1874
33. McDowell JM, Woffenden BJ (2003) Plant disease resistance genes: recent insights and potential applications. Trends Biotech 21:178-183
34. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332
35. Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15:809-834
36. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130
37. Noir S, Combes MC, Anthony F, Lashermes P (2001) Origin, diversity and evolution of NBS-type disease resistance gene homologues in coffee trees (Coffea L.). Mol Genet Genomics 265:654-662
38. Ortiz-Vázquez E, Kaemmer D, Zhang HB, Muth J, Rodríguez- Mendiola M, Arias-Castro C, James A (2005) Construction and characterization of a plant transformation-competent BIBAC library of the black Sigatoka resistant banana Musa acuminata cv. Tuu Gia (AA). Theor Appl Genet 110:706-713
39. Pedley KF, Martin GB (2003) Molecular basis of Pto-mediated resistance to bacterial speck disease in tomato. Annu Rev Phytopathol 41:215-243
40. Ploetz RC (2005) Panama disease, an old nemesis rears its ugly head: part 1, the beginnings of the banana export trades. Plant Health Progress. doi:10.1094/PHP-2005-1221-01-RV
41. Rathjen JP, Chang JH, Staskawicz BJ, Michelmore RW (1999) Constitutively active Pto induces a Prf-dependent hypersensitive response in the absence of avrPto. EMBO J 18:3232-3240
42. Riely BK, Martin GB (2001) Ancient origin of pathogen recognition specificity conferred by the tomato disease resistance gene Pto. Proc Natl Acad Sci USA 98:2059-2064
43. Sagi L, Panis B, Remy S, Schoofs H, De Smet K, Swennen R, Cammue P (1995) Genetic transformation of banana and plantain (Musa spp) via particle bombardment. Bio/Techniques 13:481-485
44. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
45. Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
46. Sessa G, D'Ascenzo M, Martin GB (2000) Thr38 and Ser198 are Pto autophosphorylation sites required for the AvrPto-Pto-mediated hypersensitive response. EMBO J 19:2257-2269
47. Tang X, Xie M, Kim YJ, Zhou J, Klessig DF, Martin GB (1999) Overexpression of Pto activates defense responses and confers broad resistance. Plant Cell 11:15-29
48. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
49. Vallad G, Rivkin M, Vallejos C, McClean P (2001) Cloning and homology modelling of a Pto-like protein kinase family of common bean (Phaseolus vulgaris L.). Theor Appl Genet 103:1046-1058
50. Vleeshouwers V.G.A.A, Martens A, van Dooijeweert W, Colon LT, Govers F, Kamoun S (2001) Ancient diversification of the Pto kinase family preceded speciation in Solanum. Mol Plant Microbe Interact 14:996-1005
51. Vos P, Simons G, Jesse T, Wijbrandi J, Heinen L, Hogers R, Frijters A, Groenendijk J, Diergaarde P, Reijans M, Fierens-Onstenk J, Both M, Peleman J, Liharska T, Hontelez J, Zabeau M (1998) The tomato Mi-1 gene confers resistance to both root-knot nematodes and potato aphids. Nature Biotech 16:1365-1369
52. Waterhouse PM, Helliwell CA (2003) Exploring plant genomes by RNA-induced gene silencing. Nature Rev 4:29-38
53. Wolfe KH, Gouy M, Yang YW, Sharp PM, Li WH (1989) Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci USA 86:6201-6205
54. Zhang B, Ramonell K, Somerville S, Stacey G (2002) Characterization of early, chitin-induced gene expression in Arabidopsis. Mol Plant Microbe Interact 15:963-970
55. Zhao B, Lin X, Poland J, Trick H, Leach J, Hulbert S (2005) A maize resistance gene functions against bacterial streak disease in rice. Proc Natl Acad Sci USA 102:15383-15388
56. Zhou T, Wang T, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics 271:402-415