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Volumn 160, Issue 1, 2007, Pages 93-102

Bilateral edge filter: Photometrically weighted, discontinuity based edge detection

Author keywords

Asymmetric; Contour tracing; Contrast enhancement; Cryo electron microscopy; Edge detection; Electron cryo microscopy; Electron microscopy; Feature extraction; Filter; Noise; Single particle analysis; Tomography

Indexed keywords

ALGORITHM; ARTICLE; CRYOELECTRON MICROSCOPY; ELECTRON MICROSCOPY; PHOTOMETRY; PRIORITY JOURNAL;

EID: 34548604274     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2007.07.005     Document Type: Article
Times cited : (12)

References (39)
  • 1
    • 0346725097 scopus 로고    scopus 로고
    • A binary segmentation approach for boxing ribosome particles in cryo EM micrographs
    • Adiga P.S.U., Malladi R., Baxter W., and Glaeser R.M. A binary segmentation approach for boxing ribosome particles in cryo EM micrographs. J. Struct. Biol. 145 (2004) 142-151
    • (2004) J. Struct. Biol. , vol.145 , pp. 142-151
    • Adiga, P.S.U.1    Malladi, R.2    Baxter, W.3    Glaeser, R.M.4
  • 2
    • 28944447140 scopus 로고    scopus 로고
    • Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking
    • Adiga U., Baxter W.T., Hall R.J., Rockel B., Rath B.K., Frank J., and Glaeser R. Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking. J. Struct. Biol. 152 (2005) 211-220
    • (2005) J. Struct. Biol. , vol.152 , pp. 211-220
    • Adiga, U.1    Baxter, W.T.2    Hall, R.J.3    Rockel, B.4    Rath, B.K.5    Frank, J.6    Glaeser, R.7
  • 3
    • 0037877561 scopus 로고    scopus 로고
    • Anisotropic diffusion of surfaces and functions on surfaces
    • Bajaj C.L., and Xu G.L. Anisotropic diffusion of surfaces and functions on surfaces. ACM Trans. Graph. 22 (2003) 4-32
    • (2003) ACM Trans. Graph. , vol.22 , pp. 4-32
    • Bajaj, C.L.1    Xu, G.L.2
  • 4
    • 34548630794 scopus 로고    scopus 로고
    • Automatic particle picking of biological molecules imaged by electron microscopy
    • Palmerston North, New Zealand
    • Banks J., Rothnagel R., and Hankamer B. Automatic particle picking of biological molecules imaged by electron microscopy. Image and Vision Computing (IVCNZ) (2003), Palmerston North, New Zealand
    • (2003) Image and Vision Computing (IVCNZ)
    • Banks, J.1    Rothnagel, R.2    Hankamer, B.3
  • 5
    • 84937415665 scopus 로고    scopus 로고
    • Barash, D., 2001. Bilateral filtering and anisotropic diffusion: towards a unified viewpoint. In: Scale-Space and Morphology in Computer Vision, Proceedings, vol. 2106, pp. 273-280.
  • 6
    • 26444473610 scopus 로고    scopus 로고
    • An energy-based three-dimensional segmentation approach for the quantitative interpretation of electron tomograms
    • Bartesaghi A., Sapiro G., and Subramaniam S. An energy-based three-dimensional segmentation approach for the quantitative interpretation of electron tomograms. IEEE Trans. Image Process. 14 (2005) 1314-1323
    • (2005) IEEE Trans. Image Process. , vol.14 , pp. 1314-1323
    • Bartesaghi, A.1    Sapiro, G.2    Subramaniam, S.3
  • 7
    • 0036704745 scopus 로고    scopus 로고
    • Gaussian-based edge-detection methods-a survey
    • Basu M. Gaussian-based edge-detection methods-a survey. IEEE Trans. Syst. Man Cybern. C Appl. Rev. 32 (2002) 252-260
    • (2002) IEEE Trans. Syst. Man Cybern. C Appl. Rev. , vol.32 , pp. 252-260
    • Basu, M.1
  • 8
    • 0036815763 scopus 로고    scopus 로고
    • Electron tomography: towards visualizing the molecular organization of the cytoplasm
    • Baumeister W. Electron tomography: towards visualizing the molecular organization of the cytoplasm. Curr. Opin. Struct. Biol. 12 (2002) 679-684
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 679-684
    • Baumeister, W.1
  • 10
  • 11
    • 0347447280 scopus 로고    scopus 로고
    • A two step approach for semi-automated particle selection from low contrast cryo-electron micrographs
    • Hall R.J., and Patwardhan A. A two step approach for semi-automated particle selection from low contrast cryo-electron micrographs. J. Struct. Biol. 145 (2004) 19-28
    • (2004) J. Struct. Biol. , vol.145 , pp. 19-28
    • Hall, R.J.1    Patwardhan, A.2
  • 12
    • 33846782577 scopus 로고    scopus 로고
    • Comments on the paper 'A novel 3D wavelet-based filter for visualizing features in noisy biological data', by Moss et al
    • Hendriks C.L., and Knowles D.W. Comments on the paper 'A novel 3D wavelet-based filter for visualizing features in noisy biological data', by Moss et al. J. Microsc. 225 (2007) 104-107
    • (2007) J. Microsc. , vol.225 , pp. 104-107
    • Hendriks, C.L.1    Knowles, D.W.2
  • 13
    • 0347447278 scopus 로고    scopus 로고
    • Application of template matching technique to particle detection in electron micrographs
    • Huang Z., and Penczek P.A. Application of template matching technique to particle detection in electron micrographs. J. Struct. Biol. 145 (2004) 29-40
    • (2004) J. Struct. Biol. , vol.145 , pp. 29-40
    • Huang, Z.1    Penczek, P.A.2
  • 14
    • 0344983355 scopus 로고    scopus 로고
    • Applications of a bilateral denoising filter in biological electron microscopy
    • Jiang W., Baker M.L., Wu Q., Bajaj C., and Chiu W. Applications of a bilateral denoising filter in biological electron microscopy. J. Struct. Biol. 144 (2003) 114-122
    • (2003) J. Struct. Biol. , vol.144 , pp. 114-122
    • Jiang, W.1    Baker, M.L.2    Wu, Q.3    Bajaj, C.4    Chiu, W.5
  • 16
    • 0346186104 scopus 로고    scopus 로고
    • Detecting particles in cryo-EM micrographs using learned features
    • Mallick S.P., Zhu Y.X., and Kriegman D. Detecting particles in cryo-EM micrographs using learned features. J. Struct. Biol. 145 (2004) 52-62
    • (2004) J. Struct. Biol. , vol.145 , pp. 52-62
    • Mallick, S.P.1    Zhu, Y.X.2    Kriegman, D.3
  • 17
    • 0018828706 scopus 로고    scopus 로고
    • Marr, D., Hildreth, E., 1980. Theory of edge-detection. In: Royal Society of London Series B-Biological Sciences, Proceedings, vol. 207, pp. 187-217.
  • 18
    • 0035956989 scopus 로고    scopus 로고
    • Marsh, B.J., Mastronarde, D.N., Buttle, K.F., Howell, K.E., McIntosh, J.R., 2001. Organellar relationships in the Golgi region of the pancreatic beta cell line, HIT-T15, visualized by high resolution electron tomography. In: National Academy of Sciences of the United States of America, Proceedings, vol. 98, pp. 2399-2406.
  • 19
    • 0344120692 scopus 로고    scopus 로고
    • Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1
    • Mouche F., Zhu Y.X., Pulokas J., Potter C.S., and Carragher B. Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1. J. Struct. Biol. 144 (2003) 301-312
    • (2003) J. Struct. Biol. , vol.144 , pp. 301-312
    • Mouche, F.1    Zhu, Y.X.2    Pulokas, J.3    Potter, C.S.4    Carragher, B.5
  • 21
    • 0347355579 scopus 로고    scopus 로고
    • TYSON: robust searching, sorting, and selecting of single particles in electron micrographs
    • Plaisier J.R., Koning R.I., Koerten H.K., van Heel M., and Abrahams J.P. TYSON: robust searching, sorting, and selecting of single particles in electron micrographs. J. Struct. Biol. 145 (2004) 76-83
    • (2004) J. Struct. Biol. , vol.145 , pp. 76-83
    • Plaisier, J.R.1    Koning, R.I.2    Koerten, H.K.3    van Heel, M.4    Abrahams, J.P.5
  • 22
    • 0347985836 scopus 로고    scopus 로고
    • Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study
    • Rath B.K., and Frank J. Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study. J. Struct. Biol. 145 (2004) 84-90
    • (2004) J. Struct. Biol. , vol.145 , pp. 84-90
    • Rath, B.K.1    Frank, J.2
  • 23
    • 0344120722 scopus 로고    scopus 로고
    • Fast 3D motif search of EM density maps using a locally normalized cross-correlation function
    • Rath B.K., Hegerl R., Leith A., Shaikh T.R., Wagenknecht T., and Frank J. Fast 3D motif search of EM density maps using a locally normalized cross-correlation function. J. Struct. Biol. 144 (2003) 95-103
    • (2003) J. Struct. Biol. , vol.144 , pp. 95-103
    • Rath, B.K.1    Hegerl, R.2    Leith, A.3    Shaikh, T.R.4    Wagenknecht, T.5    Frank, J.6
  • 24
    • 0021262512 scopus 로고
    • Automated neuron tracing using the Marr-Hildreth zerocrossing technique
    • Reuman S.R., and Capowski J.J. Automated neuron tracing using the Marr-Hildreth zerocrossing technique. Comput. Biomed. Res. 17 (1984) 93-115
    • (1984) Comput. Biomed. Res. , vol.17 , pp. 93-115
    • Reuman, S.R.1    Capowski, J.J.2
  • 25
    • 34548646555 scopus 로고    scopus 로고
    • Roerdink, J.B.T.M., Meijster, A., 2000. The watershed transform: definitions, algorithms, and parallellization strategies. IEEE Trans. Image Process. 14, 187-228.
  • 26
    • 0037375602 scopus 로고    scopus 로고
    • Particle finding in electron micrographs using a fast local correlation algorithm
    • Roseman A.M. Particle finding in electron micrographs using a fast local correlation algorithm. Ultramicroscopy 94 (2003) 225-236
    • (2003) Ultramicroscopy , vol.94 , pp. 225-236
    • Roseman, A.M.1
  • 27
    • 0346816491 scopus 로고    scopus 로고
    • FindEM-a fast, efficient program for automatic selection of particles from electron micrographs
    • Roseman A.M. FindEM-a fast, efficient program for automatic selection of particles from electron micrographs. J. Struct. Biol. 145 (2004) 91-99
    • (2004) J. Struct. Biol. , vol.145 , pp. 91-99
    • Roseman, A.M.1
  • 28
    • 0030114748 scopus 로고    scopus 로고
    • Performance of a slow-scan CCD camera for macromolecular imaging in a 400 kV electron cryomicroscope
    • Sherman M.B., Brink J., and Chiu W. Performance of a slow-scan CCD camera for macromolecular imaging in a 400 kV electron cryomicroscope. Micron 27 (1996) 129-139
    • (1996) Micron , vol.27 , pp. 129-139
    • Sherman, M.B.1    Brink, J.2    Chiu, W.3
  • 30
    • 34248167660 scopus 로고    scopus 로고
    • Efficient automatic noise reduction of electron tomographic reconstructions based on iterative median filtering
    • van der Heide P., Xu X.P., Marsh B.J., Hanein D., and Volkmann N. Efficient automatic noise reduction of electron tomographic reconstructions based on iterative median filtering. J. Struct. Biol. 158 (2007) 196-204
    • (2007) J. Struct. Biol. , vol.158 , pp. 196-204
    • van der Heide, P.1    Xu, X.P.2    Marsh, B.J.3    Hanein, D.4    Volkmann, N.5
  • 32
    • 0036424944 scopus 로고    scopus 로고
    • A novel three-dimensional variant of the watershed transform for segmentation of electron density maps
    • Volkmann N. A novel three-dimensional variant of the watershed transform for segmentation of electron density maps. J. Struct. Biol. 138 (2002) 123-129
    • (2002) J. Struct. Biol. , vol.138 , pp. 123-129
    • Volkmann, N.1
  • 33
    • 0348077420 scopus 로고    scopus 로고
    • An approach to automated particle picking from electron micrographs based on reduced representation templates
    • Volkmann N. An approach to automated particle picking from electron micrographs based on reduced representation templates. J. Struct. Biol. 145 (2004) 152-156
    • (2004) J. Struct. Biol. , vol.145 , pp. 152-156
    • Volkmann, N.1
  • 34
  • 36
    • 34249940755 scopus 로고    scopus 로고
    • The Laplacian of Gaussian and arbitrary z-crossings approach applied to automated single particle reconstruction
    • Woolford D., Hankamer B., and Ericksson G. The Laplacian of Gaussian and arbitrary z-crossings approach applied to automated single particle reconstruction. J. Struct. Biol. 159 (2007) 122-134
    • (2007) J. Struct. Biol. , vol.159 , pp. 122-134
    • Woolford, D.1    Hankamer, B.2    Ericksson, G.3
  • 37
    • 0347355581 scopus 로고    scopus 로고
    • Detecting circular and rectangular particles based on geometric feature detection in electron micrographs
    • Yu Z.Y., and Bajaj C. Detecting circular and rectangular particles based on geometric feature detection in electron micrographs. J. Struct. Biol. 145 (2004) 168-180
    • (2004) J. Struct. Biol. , vol.145 , pp. 168-180
    • Yu, Z.Y.1    Bajaj, C.2
  • 39


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.