메뉴 건너뛰기




Volumn 35, Issue 15, 2007, Pages 5232-5241

Chromosome-specific and noisy IFNB1 transcription in individual virus-infected human primary dendritic cells

Author keywords

[No Author keywords available]

Indexed keywords

BETA1 INTERFERON; ENHANCEOSOME; MESSENGER RNA; VIRUS RNA;

EID: 34548590331     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm557     Document Type: Article
Times cited : (55)

References (40)
  • 1
    • 31344461659 scopus 로고    scopus 로고
    • Innate immune recognition of viral infection
    • Kawai,T. and Akira,S. (2006) Innate immune recognition of viral infection. Nat. Immunol., 7, 131-137.
    • (2006) Nat. Immunol , vol.7 , pp. 131-137
    • Kawai, T.1    Akira, S.2
  • 3
    • 24944586285 scopus 로고    scopus 로고
    • Achieving stability of lipopolysaccharide-induced NF-kappaB activation
    • Covert,M.W., Leung,T.H., Gaston,J.E. and Baltimore,D. (2005) Achieving stability of lipopolysaccharide-induced NF-kappaB activation. Science 309, 1854-1857.
    • (2005) Science , vol.309 , pp. 1854-1857
    • Covert, M.W.1    Leung, T.H.2    Gaston, J.E.3    Baltimore, D.4
  • 4
    • 0035838991 scopus 로고    scopus 로고
    • Coordination of a transcriptional switch by HMGI(Y) acetylation
    • Munshi,N., Agalioti,T., Lomvardas,S., Merika,M., Chen,G. and Thanos,D. (2001) Coordination of a transcriptional switch by HMGI(Y) acetylation. Science, 293, 1133-1136.
    • (2001) Science , vol.293 , pp. 1133-1136
    • Munshi, N.1    Agalioti, T.2    Lomvardas, S.3    Merika, M.4    Chen, G.5    Thanos, D.6
  • 5
    • 27644564304 scopus 로고    scopus 로고
    • Enhanceosome formation over the beta interferon promoter underlies a remote-control mechanism mediated by YY1 and YY2
    • Klar,M. and Bode,J. (2005) Enhanceosome formation over the beta interferon promoter underlies a remote-control mechanism mediated by YY1 and YY2. Mol. Cell. Biol., 25, 10159-10170.
    • (2005) Mol. Cell. Biol , vol.25 , pp. 10159-10170
    • Klar, M.1    Bode, J.2
  • 6
    • 10044239268 scopus 로고    scopus 로고
    • Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancer
    • Panne,D., Maniatis,T. and Harrison,S.C. (2004) Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancer. EMBO J. 23, 4384-4393.
    • (2004) EMBO J , vol.23 , pp. 4384-4393
    • Panne, D.1    Maniatis, T.2    Harrison, S.C.3
  • 7
    • 0141703238 scopus 로고    scopus 로고
    • Selective contribution of IFN-alpha/beta signaling to the maturation of dendritic cells induced by double-stranded RNA or viral infection
    • Honda,K., Sakaguchi,S., Nakajima,C., Watanabe,A., Yanai,H., Matsumoto,M., Ohteki,T., Kaisho,T., Takaoka,A. et al. (2003) Selective contribution of IFN-alpha/beta signaling to the maturation of dendritic cells induced by double-stranded RNA or viral infection. Proc. Natl Acad. Sci. USA, 100, 10872-10877.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 10872-10877
    • Honda, K.1    Sakaguchi, S.2    Nakajima, C.3    Watanabe, A.4    Yanai, H.5    Matsumoto, M.6    Ohteki, T.7    Kaisho, T.8    Takaoka, A.9
  • 8
    • 0037223757 scopus 로고    scopus 로고
    • Newcastle disease virus (NDV)-based assay demonstrates interferon-antagonist activity for the NDV V protein and the Nipah virus V, W, and C proteins
    • Park,M.S., Shaw,M.L., Munoz-Jordan,J., Cros,J.F., Nakaya,T., Bouvier,N., Palese,P., Garcia-Sastre,A. and Basler,C.F. (2003) Newcastle disease virus (NDV)-based assay demonstrates interferon-antagonist activity for the NDV V protein and the Nipah virus V, W, and C proteins. J. Virol. 77, 1501-1511.
    • (2003) J. Virol , vol.77 , pp. 1501-1511
    • Park, M.S.1    Shaw, M.L.2    Munoz-Jordan, J.3    Cros, J.F.4    Nakaya, T.5    Bouvier, N.6    Palese, P.7    Garcia-Sastre, A.8    Basler, C.F.9
  • 9
    • 33645233651 scopus 로고    scopus 로고
    • Toll-like receptor-independent triggering of dendritic cell maturation by viruses
    • Lopez,C.B., Yount,J.S. and Moran,T.M. (2006) Toll-like receptor-independent triggering of dendritic cell maturation by viruses. J. Virol., 80, 3128-3134.
    • (2006) J. Virol , vol.80 , pp. 3128-3134
    • Lopez, C.B.1    Yount, J.S.2    Moran, T.M.3
  • 10
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
    • Arkin,A., Ross,J. and McAdams,H.H. (1998) Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics, 149, 1633-1648.
    • (1998) Genetics , vol.149 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 11
    • 33750707891 scopus 로고    scopus 로고
    • Regulation of class I major histocompatibility complex receptor expression in natural killer cells: One promoter is not enough!
    • Pascal,V., Stulberg,M.J. and Anderson,S.K. (2006) Regulation of class I major histocompatibility complex receptor expression in natural killer cells: One promoter is not enough! Immunol. Rev., 214, 9-21.
    • (2006) Immunol. Rev , vol.214 , pp. 9-21
    • Pascal, V.1    Stulberg, M.J.2    Anderson, S.K.3
  • 12
    • 0031029852 scopus 로고    scopus 로고
    • Stochastic mechanisms in gene expression
    • McAdams,H.H. and Arkin,A. (1997) Stochastic mechanisms in gene expression. Proc. Natl Acad. Sci. USA, 94, 814-819.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 814-819
    • McAdams, H.H.1    Arkin, A.2
  • 14
    • 15544388848 scopus 로고    scopus 로고
    • Noise propagation in gene networks
    • Pedraza,J.M. and van Oudenaarden,A. (2005) Noise propagation in gene networks. Science, 307, 1965-1969.
    • (2005) Science , vol.307 , pp. 1965-1969
    • Pedraza, J.M.1    van Oudenaarden, A.2
  • 15
    • 22744441386 scopus 로고    scopus 로고
    • Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity
    • Weinberger,L.S., Burnett,J.C., Toettcher,J.E., Arkin,A.P. and Schaffer,D.V. (2005) Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity. Cell, 122, 169-182.
    • (2005) Cell , vol.122 , pp. 169-182
    • Weinberger, L.S.1    Burnett, J.C.2    Toettcher, J.E.3    Arkin, A.P.4    Schaffer, D.V.5
  • 18
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: Origins, consequences, and control
    • Raser,J.M. and O'Shea,E.K. (2005) Noise in gene expression: Origins, consequences, and control. Science, 309, 2010-2013.
    • (2005) Science , vol.309 , pp. 2010-2013
    • Raser, J.M.1    O'Shea, E.K.2
  • 19
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • Raser,J.M. and O'Shea,E.K. (2004) Control of stochasticity in eukaryotic gene expression. Science, 304, 1811-1814.
    • (2004) Science , vol.304 , pp. 1811-1814
    • Raser, J.M.1    O'Shea, E.K.2
  • 20
    • 0037078982 scopus 로고    scopus 로고
    • Control, exploitation and tolerance of intracellular noise
    • Rao,C.V., Wolf,D.M. and Arkin,A.P. (2002) Control, exploitation and tolerance of intracellular noise. Nature, 420, 231-237.
    • (2002) Nature , vol.420 , pp. 231-237
    • Rao, C.V.1    Wolf, D.M.2    Arkin, A.P.3
  • 21
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz,M.B., Levine,A.J., Siggia,E.D. and Swain,P.S. (2002) Stochastic gene expression in a single cell. Science, 297, 1183-1186.
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 24
    • 25844433114 scopus 로고    scopus 로고
    • Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels
    • Bengtsson,M., Stahlberg,A., Rorsman,P. and Kubista,M. (2005) Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels. Genome Res. 15, 1388-1392.
    • (2005) Genome Res , vol.15 , pp. 1388-1392
    • Bengtsson, M.1    Stahlberg, A.2    Rorsman, P.3    Kubista, M.4
  • 26
    • 33845218548 scopus 로고    scopus 로고
    • Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR
    • Warren,L., Bryder,D., Weissman,I.L. and Quake,S.R. (2006) Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR. Proc. Natl Acad. Sci. USA, 103, 17807-17812.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 17807-17812
    • Warren, L.1    Bryder, D.2    Weissman, I.L.3    Quake, S.R.4
  • 27
    • 0036160716 scopus 로고    scopus 로고
    • Kinetic polymerase chain reaction on pooled DNA: A high-throughput, high-efficiency alternative in genetic epidemiological studies
    • Chen,J., Germer,S., Higuchi,R., Berkowitz,G., Godbold,J. and Wetmur,J.G. (2002) Kinetic polymerase chain reaction on pooled DNA: A high-throughput, high-efficiency alternative in genetic epidemiological studies. Cancer Epidemiol. Biomarkers Prev., 11, 131-136.
    • (2002) Cancer Epidemiol. Biomarkers Prev , vol.11 , pp. 131-136
    • Chen, J.1    Germer, S.2    Higuchi, R.3    Berkowitz, G.4    Godbold, J.5    Wetmur, J.G.6
  • 28
    • 34250017968 scopus 로고    scopus 로고
    • An atomic model of the interferon-beta enhanceosome
    • Panne,D., Maniatis,T. and Harrison,S.C. (2007) An atomic model of the interferon-beta enhanceosome. Cell, 129, 1111-1123.
    • (2007) Cell , vol.129 , pp. 1111-1123
    • Panne, D.1    Maniatis, T.2    Harrison, S.C.3
  • 29
    • 3543055705 scopus 로고    scopus 로고
    • Human cytomegalovirus-encoded interleukin-10 homolog inhibits maturation of dendritic cells and alters their functionality
    • Chang,W.L., Baumgarth,N., Yu,D. and Barry,P.A. (2004) Human cytomegalovirus-encoded interleukin-10 homolog inhibits maturation of dendritic cells and alters their functionality. J. Virol., 78 8720-8731.
    • (2004) J. Virol , vol.78 , pp. 8720-8731
    • Chang, W.L.1    Baumgarth, N.2    Yu, D.3    Barry, P.A.4
  • 30
    • 0041387412 scopus 로고    scopus 로고
    • Newcastle disease virus V protein is a determinant of host range restriction
    • Park,M.S., Garcia-Sastre,A., Cros,J.F., Basler,C.F. and Palese,P. (2003) Newcastle disease virus V protein is a determinant of host range restriction. J. Virol., 77, 9522-9532.
    • (2003) J. Virol , vol.77 , pp. 9522-9532
    • Park, M.S.1    Garcia-Sastre, A.2    Cros, J.F.3    Basler, C.F.4    Palese, P.5
  • 31
    • 0344642936 scopus 로고    scopus 로고
    • Type I interferon induction pathway, but not released interferon, participates in the maturation of dendritic cells induced by negative-strand RNA viruses
    • Lopez,C.B., Garcia-Sastre,A., Williams,B.R. and Moran,T.M. (2003) Type I interferon induction pathway, but not released interferon, participates in the maturation of dendritic cells induced by negative-strand RNA viruses. J. Infect. Dis., 187, 1126-1136.
    • (2003) J. Infect. Dis , vol.187 , pp. 1126-1136
    • Lopez, C.B.1    Garcia-Sastre, A.2    Williams, B.R.3    Moran, T.M.4
  • 33
    • 2342586665 scopus 로고    scopus 로고
    • Increased sample capacity for genotyping and expression profiling by kinetic polymerase chain reaction
    • Watson,R.M., Griaznova,O.I., Long,C.M. and Holland,M.J. (2004) Increased sample capacity for genotyping and expression profiling by kinetic polymerase chain reaction. Anal. Biochem., 329, 58-67.
    • (2004) Anal. Biochem , vol.329 , pp. 58-67
    • Watson, R.M.1    Griaznova, O.I.2    Long, C.M.3    Holland, M.J.4
  • 34
    • 0033681250 scopus 로고    scopus 로고
    • Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter
    • Agalioti,T., Lomvardas,S., Parekh,B., Yie,J., Maniatis,T. and Thanos,D. (2000) Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter. Cell, 103, 667-678.
    • (2000) Cell , vol.103 , pp. 667-678
    • Agalioti, T.1    Lomvardas, S.2    Parekh, B.3    Yie, J.4    Maniatis, T.5    Thanos, D.6
  • 35
    • 0026489365 scopus 로고
    • The high mobility group protein HMG I(Y) is required for NF-kappa B-dependent virus induction of the human IFN-beta gene
    • Thanos,D. and Maniatis,T. (1992) The high mobility group protein HMG I(Y) is required for NF-kappa B-dependent virus induction of the human IFN-beta gene. Cell, 71, 777-789.
    • (1992) Cell , vol.71 , pp. 777-789
    • Thanos, D.1    Maniatis, T.2
  • 37
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie,D.T. (1977) Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem., 81, 2340-2361.
    • (1977) J. Phys. Chem , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 38
    • 0037223402 scopus 로고    scopus 로고
    • p38 Mitogen-activated protein kinase-dependent and -independent signaling of mRNA stability of AU-rich element-containing transcripts
    • Frevel,M.A., Bakheet,T., Silva,A.M., Hissong,J.G., Khabar,K.S. and Williams,B.R. (2003) p38 Mitogen-activated protein kinase-dependent and -independent signaling of mRNA stability of AU-rich element-containing transcripts. Mol. Cell. Biol., 23, 425-436.
    • (2003) Mol. Cell. Biol , vol.23 , pp. 425-436
    • Frevel, M.A.1    Bakheet, T.2    Silva, A.M.3    Hissong, J.G.4    Khabar, K.S.5    Williams, B.R.6
  • 39
    • 0025212710 scopus 로고
    • Postinduction turnoff of beta-interferon gene expression
    • Whittemore,L.A. and Maniatis,T. (1990) Postinduction turnoff of beta-interferon gene expression. Mol. Cell. Biol., 10, 1329-1337.
    • (1990) Mol. Cell. Biol , vol.10 , pp. 1329-1337
    • Whittemore, L.A.1    Maniatis, T.2
  • 40
    • 7444235907 scopus 로고    scopus 로고
    • Cis-acting regulatory variation in the human genome
    • Pastinen,T. and Hudson,T.J. (2004) Cis-acting regulatory variation in the human genome. Science, 306, 647-650.
    • (2004) Science , vol.306 , pp. 647-650
    • Pastinen, T.1    Hudson, T.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.