-
1
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl T. Instability and decay of the primary structure of DNA. Nature 362 (1993) 709-715
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
2
-
-
0028271685
-
An altered-specificity mutation in a human POU domain demonstrates functional analogy between the POU-specific subdomain and phage lambda repressor
-
Jancso A., Botfield M.C., Sowers L.C., and Weiss M.A. An altered-specificity mutation in a human POU domain demonstrates functional analogy between the POU-specific subdomain and phage lambda repressor. Proc. Natl. Acad. Sci. USA 91 (1994) 3887-3891
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 3887-3891
-
-
Jancso, A.1
Botfield, M.C.2
Sowers, L.C.3
Weiss, M.A.4
-
3
-
-
0037172798
-
Endogenous DNA lesions can inhibit the binding of the AP-1 (c-Jun) transcription factor
-
Rogstad D.K., Liu P., Burdzy A., Lin S.S., and Sowers L.C. Endogenous DNA lesions can inhibit the binding of the AP-1 (c-Jun) transcription factor. Biochemistry 41 (2002) 8093-8102
-
(2002)
Biochemistry
, vol.41
, pp. 8093-8102
-
-
Rogstad, D.K.1
Liu, P.2
Burdzy, A.3
Lin, S.S.4
Sowers, L.C.5
-
4
-
-
0004228157
-
-
ASM Press, Washington, DC
-
Friedberg E.C., Walker G.C., and Siede W. DNA Repair and Mutagenesis (1995), ASM Press, Washington, DC
-
(1995)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
-
5
-
-
0017392934
-
DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli
-
Lindahl T., Ljungquist S., Siegert W., Nyberg B., and Sperens B. DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli. J. Biol. Chem. 252 (1977) 3286-3294
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 3286-3294
-
-
Lindahl, T.1
Ljungquist, S.2
Siegert, W.3
Nyberg, B.4
Sperens, B.5
-
6
-
-
0029904839
-
A nucleotideflipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
Slupphaug G., Mol C.D., Kavli B., Arvai A.S., Krokan H.E., and Tainer J.A. A nucleotideflipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature 384 (1996) 87-92
-
(1996)
Nature
, vol.384
, pp. 87-92
-
-
Slupphaug, G.1
Mol, C.D.2
Kavli, B.3
Arvai, A.S.4
Krokan, H.E.5
Tainer, J.A.6
-
7
-
-
0028959237
-
The structural basis of specific base-excision repair by uracil-DNA glycosylase
-
Savva R., McAuley-Hecht K., Brown T., and Pearl L. The structural basis of specific base-excision repair by uracil-DNA glycosylase. Nature 373 (1995) 487-493
-
(1995)
Nature
, vol.373
, pp. 487-493
-
-
Savva, R.1
McAuley-Hecht, K.2
Brown, T.3
Pearl, L.4
-
8
-
-
0032498302
-
Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions
-
Barrett T.E., Savva R., Panayotou G., Barlow T., Brown T., Jiricny J., and Pearl L.H. Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions. Cell 92 (1998) 117-129
-
(1998)
Cell
, vol.92
, pp. 117-129
-
-
Barrett, T.E.1
Savva, R.2
Panayotou, G.3
Barlow, T.4
Brown, T.5
Jiricny, J.6
Pearl, L.H.7
-
9
-
-
0038771139
-
Structure and specificity of the vertebrate anti-mutator uracil-DNA glycosylase SMUG1
-
Wibley J.E., Waters T.R., Haushalter K., Verdine G.L., and Pearl L.H. Structure and specificity of the vertebrate anti-mutator uracil-DNA glycosylase SMUG1. Mol. Cell 11 (2003) 1647-1659
-
(2003)
Mol. Cell
, vol.11
, pp. 1647-1659
-
-
Wibley, J.E.1
Waters, T.R.2
Haushalter, K.3
Verdine, G.L.4
Pearl, L.H.5
-
10
-
-
0141996214
-
Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8
-
Hoseki J., Okamoto A., Masui R., Shibata T., Inoue Y., Yokoyama S., and Kuramitsu S. Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8. J. Mol. Biol. 333 (2003) 515-526
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 515-526
-
-
Hoseki, J.1
Okamoto, A.2
Masui, R.3
Shibata, T.4
Inoue, Y.5
Yokoyama, S.6
Kuramitsu, S.7
-
11
-
-
0037124349
-
A novel uracil-DNA glycosylase with broad substrate specificity and an unusual active site
-
Sartori A.A., Fitz-Gibbon S., Yang H., Miller J.H., and Jiricny J. A novel uracil-DNA glycosylase with broad substrate specificity and an unusual active site. EMBO J. 21 (2002) 3182-3191
-
(2002)
EMBO J.
, vol.21
, pp. 3182-3191
-
-
Sartori, A.A.1
Fitz-Gibbon, S.2
Yang, H.3
Miller, J.H.4
Jiricny, J.5
-
12
-
-
0035839610
-
Biochemical characterization of uracil processing activities in the hyperthermophilic archaeon Pyrobaculum aerophilum
-
Sartori A.A., Schar P., Fitz-Gibbon S., Miller J.H., and Jiricny J. Biochemical characterization of uracil processing activities in the hyperthermophilic archaeon Pyrobaculum aerophilum. J. Biol. Chem. 276 (2001) 29979-29986
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29979-29986
-
-
Sartori, A.A.1
Schar, P.2
Fitz-Gibbon, S.3
Miller, J.H.4
Jiricny, J.5
-
13
-
-
0037052965
-
A novel type of uracil-DNA glycosylase mediating repair of hydrolytic DNA damage in the extremely thermophilic eubacterium Thermus thermophilus
-
Starkuviene V., and Fritz H.-J. A novel type of uracil-DNA glycosylase mediating repair of hydrolytic DNA damage in the extremely thermophilic eubacterium Thermus thermophilus. Nucleic Acids Res. 30 (2002) 2097-2102
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2097-2102
-
-
Starkuviene, V.1
Fritz, H.-J.2
-
14
-
-
0034734383
-
Structure and function in the uracil-DNA glycosylase superfamily
-
Pearl L.H. Structure and function in the uracil-DNA glycosylase superfamily. Mutat. Res. 460 (2000) 165-181
-
(2000)
Mutat. Res.
, vol.460
, pp. 165-181
-
-
Pearl, L.H.1
-
15
-
-
0028832392
-
DNA repair in three dimensions
-
Pearl L.H., and Savva R. DNA repair in three dimensions. Trends Biochem. Sci. 20 (1995) 421-426
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 421-426
-
-
Pearl, L.H.1
Savva, R.2
-
16
-
-
0030861915
-
DNA glycosylases in the base excision repair of DNA
-
Krokan H.E., Standal R., and Slupphaug G. DNA glycosylases in the base excision repair of DNA. Biochem. J. 325 (1997) 1-16
-
(1997)
Biochem. J.
, vol.325
, pp. 1-16
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
17
-
-
0027761910
-
Kinetics of the uracil-DNA glycosylase/inhibitor protein association. Ung interaction with Ugi, nucleic acids, and uracil compounds
-
Bennett S.E., Schimerlik M.I., and Mosbaugh D.W. Kinetics of the uracil-DNA glycosylase/inhibitor protein association. Ung interaction with Ugi, nucleic acids, and uracil compounds. J. Biol. Chem. 268 (1993) 26879-26885
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 26879-26885
-
-
Bennett, S.E.1
Schimerlik, M.I.2
Mosbaugh, D.W.3
-
18
-
-
0042090471
-
Importance of uracil DNA glycosylase in Pseudomonas aeruginosa and Mycobacterium smegmatis, G + C-rich bacteria, in mutation prevention, tolerance to acidified nitrite, and endurance in mouse macrophages
-
Venkatesh J., Kumar P., Krishna P.S., Manjunath R., and Varshney U. Importance of uracil DNA glycosylase in Pseudomonas aeruginosa and Mycobacterium smegmatis, G + C-rich bacteria, in mutation prevention, tolerance to acidified nitrite, and endurance in mouse macrophages. J. Biol. Chem. 278 (2003) 24350-24358
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 24350-24358
-
-
Venkatesh, J.1
Kumar, P.2
Krishna, P.S.3
Manjunath, R.4
Varshney, U.5
-
19
-
-
0345701347
-
Genes required for mycobacterial growth defined by high density mutagenesis
-
Sassetti C.M., Boyd D.H., and Rubin E.J. Genes required for mycobacterial growth defined by high density mutagenesis. Mol. Microbiol. 48 (2003) 77-84
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 77-84
-
-
Sassetti, C.M.1
Boyd, D.H.2
Rubin, E.J.3
-
20
-
-
0041589201
-
Enzymology of Base Excision Repair in the Hyperthermophilic Archaeon Pyrobaculum aerophilum
-
Sartori A.A., and Jiricny J. Enzymology of Base Excision Repair in the Hyperthermophilic Archaeon Pyrobaculum aerophilum. J. Biol. Chem. 278 (2003) 24563-24576
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 24563-24576
-
-
Sartori, A.A.1
Jiricny, J.2
-
21
-
-
0025732374
-
Specificities and kinetics of uracil excision from uracil-containing DNA oligomers by Escherichia coli uracil DNA glycosylase
-
Varshney U., and van de Sande J.H. Specificities and kinetics of uracil excision from uracil-containing DNA oligomers by Escherichia coli uracil DNA glycosylase. Biochemistry 30 (1991) 4055-4061
-
(1991)
Biochemistry
, vol.30
, pp. 4055-4061
-
-
Varshney, U.1
van de Sande, J.H.2
-
22
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
23
-
-
0017390556
-
A rapid, sensitive, and versatile assay for protein using Coomassie brilliant blue G250
-
Sedmak J.J., and Grossberg S.E. A rapid, sensitive, and versatile assay for protein using Coomassie brilliant blue G250. Anal. Biochem. 79 (1977) 544-552
-
(1977)
Anal. Biochem.
, vol.79
, pp. 544-552
-
-
Sedmak, J.J.1
Grossberg, S.E.2
-
24
-
-
0038148669
-
Complexes of the uracil-DNA glycosylase inhibitor protein, Ugi, with Mycobacterium smegmatis and Mycobacterium tuberculosis uracil-DNA glycosylases
-
Acharya N., Kumar P., and Varshney U. Complexes of the uracil-DNA glycosylase inhibitor protein, Ugi, with Mycobacterium smegmatis and Mycobacterium tuberculosis uracil-DNA glycosylases. Microbiology 149 (2003) 1647-1658
-
(2003)
Microbiology
, vol.149
, pp. 1647-1658
-
-
Acharya, N.1
Kumar, P.2
Varshney, U.3
-
25
-
-
0034617208
-
The fate of the initiator tRNAs is sensitive to the critical balance between interacting proteins
-
Thanedar S., Kumar N.V., and Varshney U. The fate of the initiator tRNAs is sensitive to the critical balance between interacting proteins. J. Biol. Chem. 275 (2000) 20361-20367
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 20361-20367
-
-
Thanedar, S.1
Kumar, N.V.2
Varshney, U.3
-
26
-
-
0031692027
-
DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence?
-
Mizrahi V., and Andersen S.J. DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence?. Mol. Microbiol. 29 (1998) 1331-1339
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 1331-1339
-
-
Mizrahi, V.1
Andersen, S.J.2
-
27
-
-
31844441997
-
Unique transcriptome signature of Mycobacterium tuberculosis in pulmonary tuberculosis
-
Rachman H., Strong M., Ulrichs T., Grode L., Schuchhardt J., Mollenkopf H., Kosmiadi G.A., Eisenberg D., and Kaufmann S.H. Unique transcriptome signature of Mycobacterium tuberculosis in pulmonary tuberculosis. Infect. Immun. 74 (2006) 1233-1242
-
(2006)
Infect. Immun.
, vol.74
, pp. 1233-1242
-
-
Rachman, H.1
Strong, M.2
Ulrichs, T.3
Grode, L.4
Schuchhardt, J.5
Mollenkopf, H.6
Kosmiadi, G.A.7
Eisenberg, D.8
Kaufmann, S.H.9
-
28
-
-
0043142536
-
Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment
-
Schnappinger D., Ehrt S., Voskuil M.I., Liu Y., Mangan J.A., Monahan I.M., Dolganov G., Efron B., Butcher P.D., Nathan C., and Schoolnik G.K. Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment. J. Exp. Med. 198 (2003) 693-704
-
(2003)
J. Exp. Med.
, vol.198
, pp. 693-704
-
-
Schnappinger, D.1
Ehrt, S.2
Voskuil, M.I.3
Liu, Y.4
Mangan, J.A.5
Monahan, I.M.6
Dolganov, G.7
Efron, B.8
Butcher, P.D.9
Nathan, C.10
Schoolnik, G.K.11
-
29
-
-
2542475126
-
Temperature-induced structural changes in putidaredoxin: a circular dichroism and UV-vis absorption study
-
Reipa V., Holden M., Mayhew M.P., and Vilker V.L. Temperature-induced structural changes in putidaredoxin: a circular dichroism and UV-vis absorption study. Biochim. Biophys. Acta 1699 (2004) 229-234
-
(2004)
Biochim. Biophys. Acta
, vol.1699
, pp. 229-234
-
-
Reipa, V.1
Holden, M.2
Mayhew, M.P.3
Vilker, V.L.4
-
30
-
-
0038352097
-
The role of Fe-S proteins in sensing and regulation in bacteria
-
Kiley P.J., and Beinert H. The role of Fe-S proteins in sensing and regulation in bacteria. Curr. Opin. Microbiol. 6 (2003) 181-185
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 181-185
-
-
Kiley, P.J.1
Beinert, H.2
-
31
-
-
0037757545
-
Reversible inactivation of E. coli endonuclease III via modification of its [4Fe-4S] cluster by nitric oxide
-
Rogers P.A., Eide L., Klungland A., and Ding H. Reversible inactivation of E. coli endonuclease III via modification of its [4Fe-4S] cluster by nitric oxide. DNA Rep. 2 (2003) 809-817
-
(2003)
DNA Rep.
, vol.2
, pp. 809-817
-
-
Rogers, P.A.1
Eide, L.2
Klungland, A.3
Ding, H.4
-
32
-
-
0035750483
-
Repair of oxidative DNA damage: mechanisms and functions
-
Lu A.L., Li X., Gu Y., Wright P.M., and Chang D.Y. Repair of oxidative DNA damage: mechanisms and functions. Cell Biochem. Biophys. 35 (2001) 141-170
-
(2001)
Cell Biochem. Biophys.
, vol.35
, pp. 141-170
-
-
Lu, A.L.1
Li, X.2
Gu, Y.3
Wright, P.M.4
Chang, D.Y.5
-
34
-
-
0033214607
-
Structural characterisation of a uracil containing hairpin DNA by NMR and molecular dynamics
-
Ghosh M., Kumar N.V., Varshney U., and Chary K.V. Structural characterisation of a uracil containing hairpin DNA by NMR and molecular dynamics. Nucleic Acids Res. 27 (1999) 3938-3944
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3938-3944
-
-
Ghosh, M.1
Kumar, N.V.2
Varshney, U.3
Chary, K.V.4
-
35
-
-
0037100702
-
Effects of mutations at tyrosine 66 and asparagines [123] in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: evidence for the occurrence of long-range interactions between the enzyme and substrate
-
Handa P., Acharya N., and Varshney U. Effects of mutations at tyrosine 66 and asparagines [123] in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: evidence for the occurrence of long-range interactions between the enzyme and substrate. Nucleic Acids Res. 30 (2002) 3086-3095
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3086-3095
-
-
Handa, P.1
Acharya, N.2
Varshney, U.3
-
36
-
-
0000127073
-
Sequence-specific recognition of double helical nucleic acids by proteins
-
Seeman N.C., Rosenberg J.M., and Rich A. Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl. Acad. Sci. USA 73 (1976) 804-808
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 804-808
-
-
Seeman, N.C.1
Rosenberg, J.M.2
Rich, A.3
-
37
-
-
0348140585
-
Abasic sites in DNA: repair and biological consequences in Saccharomyces cerevisiae
-
Boiteux S., and Guillet M. Abasic sites in DNA: repair and biological consequences in Saccharomyces cerevisiae. DNA Rep. 3 (2004) 1-12
-
(2004)
DNA Rep.
, vol.3
, pp. 1-12
-
-
Boiteux, S.1
Guillet, M.2
-
38
-
-
16344377473
-
A role for iron-sulfur clusters in DNA repair
-
Lukianova O.A., and David S.S. A role for iron-sulfur clusters in DNA repair. Curr. Opin. Chem. Biol. 9 (2005) 145-151
-
(2005)
Curr. Opin. Chem. Biol.
, vol.9
, pp. 145-151
-
-
Lukianova, O.A.1
David, S.S.2
-
39
-
-
34548543914
-
-
P. Kumar, DNA Repair in Mycobacteria, Ph.D. thesis, Indian Institute of Science, Bangalore, India, 2005.
-
-
-
|