Circadian clock-protein expression in cyanobacteria: Rhythms and phase setting

EMBO Journal

Volumn 19, Issue 13, 2000, Pages 3349-3357

  Xu, Yao ^a   Mori, Tetsuya ^a   Johnson, Carl Hirschie ^a  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Circadian; Clock; Cyanobacteria; Kai

Indexed keywords

CHLORAMPHENICOL; PROTEIN;

ARTICLE; CIRCADIAN RHYTHM; CONTROLLED STUDY; CYANOBACTERIUM; GENE CLUSTER; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN SYNTHESIS INHIBITION; TRANSLATION REGULATION;

CYANOBACTERIA; KAIA; PROKARYOTA;

EID: 0034600948     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/19.13.3349     Document Type: Article

References (41)

1. Aoki, S., Kondo, T., Wada, H. and Ishiura, M. (1997) Orcadian rhythm of the cyanobacterium Synechocystis sp. strain PCC 6803 in the dark. J. Bacteriol., 179, 5751-5755.
2. Aronson, B., Johnson, K., Loros, J.J. and Dunlap, J.C. (1994) Negative feedback defining a circadian clock: autoregulation in the clock gene frequency. Science, 263, 1578-1584.
3. Bustos, S.A. and Golden, S.S. (1991) Expression of the psbDII gene in Synechococcus sp. strain PCC 7942 requires sequences downstream of the transcription start site. J. Bacteriol., 173, 7525-7533.
4. Darlington, T.K., Wager-Smith, K., Ceriani, M.F., Staknis, D., Gekakis, N., Steeves, T.D.L., Weitz, C.J., Takahashi, J.S. and Kay, S.A. (1998) Closing the circadian loop: CLOCK-induced transcription of its own inhibitors per and tim. Science, 280, 1599-1603.
5. Doolittle, W.F. (1979) The cyanobacterial genome, its expression and the control of that expression. Adv. Microb. Physiol., 20, 1-102.
6. Dunlap, J.C. (1999) Molecular hases for circadian clocks. Cell, 96, 271-290.
7. Edery, I., Rutila, J.E. and Rosbash, M. (1994) Phase shifting of the circadian clock by induction of the Drosophila period protein. Science, 263, 237-240.
8. Griffin, E.A., Jr, Staknis, D. and Weitz, C.J. (1999) Light-independent role of CRY1 and CRY2 in the mammalian circadian clock. Science, 286, 765-768.
9. Hao, H., Allen, D.L. and Hardin, P.E. (1997) A circadian enhancer mediates PER-dependent mRNA cycling in Drosophila melanogaster. Mol. Cell. Biol., 17, 3687-3693.
10. Hardin, P.E., Hall, J.C. and Rosbash, M. (1990) Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels. Nature, 343, 536-540.
11. Harlow, E. and Lane, D. (1999) Using Antibodies: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
12. Hastings, M.H., Field, M.D., Maywood, E.S., Weaver, D.R. and Reppert, S.M. (1999) Differential regulation of mPER1 and mTIM proteins in the mouse suprachiasmutic nuclei: new insights into a core clock mechanism. J. Neurosci., 19, RC11.
13. Ishiura, M., Kutsuna, S., Aoki, S., Iwasaki, H., Andersson, C.R., Tanabe, A., Golden, S.S., Johnson, C.H. and Kondo, T. (1998) Expression of a gene cluster kuiABC as a circadian feedback process in cyanobacteria. Science, 281, 1519-1523.
14. Iwasaki, H., Taniguchi, Y., Ishiura, M. and Kondo, T. (1999) Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria. EMBO J., 18, 1137-1145.
15. Iwasaki, H., Williams, S.B., Kitayama, Y., Ishiura, M., Golden, S.S. and Kondo, T. (2000) A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell, 101, 223-233.
16. Johnson, C.H. (1999) Forty years of PRCs - what have we learned? Chronobiol. Int., 16, 711-743.
17. Johnson, C.H. and Golden, S.S. (1999) Circadian programs in cyanobacteria: adaptiveness and mechanism. Annu. Rev. Microbiol., 53, 389-409.
18. Johnson, C.H., Knight, M., Trewavas, A. and Kondo, T. (1998) A clockwork green: circadian programs in photosymhetic organisms. In Lumsden, P. and Millar, A. (eds), Biological Rhythms and Photoperiodism in Plants. BIOS Scientific, Oxford, UK, pp. 1-34.
19. Kondo, T., Strayer, C.A., Kulkarni, R.D., Taylor, W.R., Ishiura, M., Golden, S.S. and Johnson, C.H. (1993) Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria. Proc. Natl Acad. Sci. USA, 90, 5672-5676.
20. Kumano, M., Tomioka, N., Shinozaki, K. and Sugiura, M. (1986) Analysis of the promoter region in the rrnA operon from a blue-green alga, Anacystis nidulans 6301. Mol. Gen. Genet., 202, 173-178.
21. Kume, K., Zylka, M., Sriram, S., Shearman, L.P., Weaver, D.R., Jin, X., Maywood, E.S., Hastings, M.H. and Reppert, S.M. (1999) mCRY1 and mCRY2 are essential components of the negative limb of the circadian feedback loop. Cell, 98, 193-205.
22. Leipe, D.D., Aravind, L., Grishin, N.V. and Koonin, E.V. (2000) The bacterial replicative helicase DnaB evolved from a RecA duplication. Genome Res., 10, 5-16.
23. Liu, Y., Tsinoremas, N.F., Johnson, C.H., Lebedeva, N.V., Golden, S.S., Ishiura, M. and Kondo, T. (1995) Circadian orchestration of gene expression in cyanobacteria. Genes Dev., 9, 1469-1478.
24. Liu, Y., Loros, J. and Dunlap, J.C. (2000) Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock. Proc. Natl Acad. Sci. USA, 97, 234-239.
25. Lowry, O.H., Rosebrough, N.J., Farr, A.L. and Randall, R.J. (1951) Protein measurement with the Folin phenol reagent. J. Biol. Chem., 193, 265-275.
26. Merrow, M.W., Garceau, N.Y. and Dunlap, J.C. (1997) Dissection of a circadian oscillation into discrete domains. Proc. Natl Acad. Sci. USA, 94, 3877-3882.
27. Mori, T., Binder, B. and Johnson, C.H. (1996) Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 h. Proc. Natl Acad. Sci. USA, 93, 10183-10188.
28. Nishiwaki, T., Iwasaki, H., Ishiura, M. and Kondo, T. (2000) Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria. Proc. Natl Acad. Sci. USA, 97, 495-499.
29. Ouyang, Y., Andersson, C.R., Kondo, T., Golden, S.S. and Johnson, C.H. (1998) Resonating circadian clocks enhance fitness in cyanobacteria. Proc. Natl Acad. Sci. USA. 95, 8660-8664.
30. Price, J.L., Blau, J., Rothenfluh, A., Abodeely, M., Kloss, B. and Young, M.W. (1998) Double-time is a novel Drosophila clock gene that regulates PERIOD protein accumulation. Cell, 94, 83-95.
31. Rosbash, M. and Hall, J.C. (1989) The molecular biology of circadian rhythms. Neuron, 3, 387-398.
32. Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carré, I.A. and Coupland, G. (1998) LATE ELONGATED HYPOCOTYL, an Arabidopsis gene encoding a MYB transcription factor, regulates circadian rhythmicity and photoperiodic responses. Cell, 93, 1219-1229.
33. Schneegurt, M.A., Sherman, D.M. and Sherman, L.A. (1997) Growth, physiology and ultrastructure of a diazotrophic cyanobacterium, Cyanothece sp. strain ATCC 51142, in mixotrophic and chemoheterotrophic cultures. J. Phycol. 33, 632-642.
34. Sehgal, A., Rothenfluh-Hilfiker, A., Hunter-Ensor, M., Chen, Y., Myers, M.P. and Young, M.W. (1995) Rhythmic expression of timeless: a basis for promoting circadian cycles in period gene autoregulation. Science. 270. 808-810.
35. Sun, Z.S., Albrecht, U., Zhuchenko, O., Bailey, J., Eichele, G. and Lee, C.C. (1997) Rigui [mperl], a putative mammalian ortholog of the Drosophila period gene. Cell, 90, 1003-1011.
36. Tei, H., Okamura, H., Shigeyoshi, Y., Fukuhara, C., Ozawa, R., Hirose, M. and Sakaki, Y. (1997) Circadian oscillation of a mammalian homologue of the Drosophila period gene. Nature, 389, 512-516.
37. Tomioka, N., Shinozaki, K. and Sugiura, M. (1981) Molecular cloning and characterization of ribosomal RNA genes from a blue-green alga, Anacystis nidulans. Mol. Gen. Genet., 184, 359-363.
38. Wang, Z.-Y. and Tobin, E.M. (1998) Constitutive expression of the circadian clock associated 1 (CCA-1) gene disrupts circadian rhythms and suppresses its own expression. Cell, 93, 1207-1217.
39. Xu, Y., Piston, D.W. and Johnson, C.H. (1999) A bioluminescence resonance energy transfer (BRET) system: application to interacting circadian clock proteins. Proc. Natl Acad. Sci. USA, 96, 151-156.
40. Young, M.W. (1998) The molecular control of circadian behavioral rhythms and their entrainment in Drosophila. Annu. Rev. Biochem., 67, 135-152.
41. Zylka, M., Shearman, L., Weaver, D. and Reppert, S. (1998) Three period homologs in mammals: differential light responses in the suprachiasmatic circadian clock and oscillating transcripts outside the brain. Neuron, 20, 1103-1110.