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Volumn 26, Issue 2, 2007, Pages 581-590

Exploring the active site of acyl homoserine lactones-dependent transcriptional regulators with bacterial quorum sensing modulators using molecular mechanics and docking studies

Author keywords

AHLs; Conformational analysis; Docking; Modulators; Quorum sensing; TraR

Indexed keywords

BACTERIA; CONFORMATIONS; DOCKING; ESTERS; MOLECULAR MECHANICS; MOLECULAR MODELING;

EID: 34548317426     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmgm.2007.04.004     Document Type: Article
Times cited : (26)

References (27)
  • 1
    • 0034967368 scopus 로고    scopus 로고
    • Quorum sensing and the regulation of virulence gene expression in pathogenic bacteria
    • Winzer K., and Williams P. Quorum sensing and the regulation of virulence gene expression in pathogenic bacteria. Int. J. Med. Microbiol. 291 (2001) 131-143
    • (2001) Int. J. Med. Microbiol. , vol.291 , pp. 131-143
    • Winzer, K.1    Williams, P.2
  • 3
    • 33644517930 scopus 로고    scopus 로고
    • Bacterial small-molecule signaling pathways
    • Camilli A., and Bassler B.L. Bacterial small-molecule signaling pathways. Science 311 (2006) 1113-1116
    • (2006) Science , vol.311 , pp. 1113-1116
    • Camilli, A.1    Bassler, B.L.2
  • 4
    • 27944442272 scopus 로고    scopus 로고
    • Quorum sensing: cell-to-cell communication in bacteria
    • Waters C.M., and Bassler B.L. Quorum sensing: cell-to-cell communication in bacteria. Annu. Rev. Cell Dev. Biol. 21 (2005) 319-346
    • (2005) Annu. Rev. Cell Dev. Biol. , vol.21 , pp. 319-346
    • Waters, C.M.1    Bassler, B.L.2
  • 5
    • 15744374874 scopus 로고    scopus 로고
    • New strategies for the treatment of infections associated with prosthetic joints
    • Trampuz A., and Zimmerli W. New strategies for the treatment of infections associated with prosthetic joints. Curr. Opin. Investig. Drugs 6 (2005) 185-190
    • (2005) Curr. Opin. Investig. Drugs , vol.6 , pp. 185-190
    • Trampuz, A.1    Zimmerli, W.2
  • 7
    • 0033814530 scopus 로고    scopus 로고
    • Population studies of methicillin-resistant and -sensitive Staphylococcus aureus strains reveal a lack of variability in the agrD gene, encoding a staphylococcal autoinducer peptide
    • van Leeuwen W., van Nieuwenhuizen W., Gijzen C., Verbrugh H., and van Belkum A. Population studies of methicillin-resistant and -sensitive Staphylococcus aureus strains reveal a lack of variability in the agrD gene, encoding a staphylococcal autoinducer peptide. J. Bacteriol. 182 (2000) 5721-5729
    • (2000) J. Bacteriol. , vol.182 , pp. 5721-5729
    • van Leeuwen, W.1    van Nieuwenhuizen, W.2    Gijzen, C.3    Verbrugh, H.4    van Belkum, A.5
  • 8
    • 32844473495 scopus 로고    scopus 로고
    • Stereoisomers of P. aeruginosa autoinducer analog to probe the regulator binding site
    • Jog G.J., Igarashi J., and Suga H. Stereoisomers of P. aeruginosa autoinducer analog to probe the regulator binding site. Chem. Biol. 13 (2006) 123-128
    • (2006) Chem. Biol. , vol.13 , pp. 123-128
    • Jog, G.J.1    Igarashi, J.2    Suga, H.3
  • 10
    • 12844275341 scopus 로고    scopus 로고
    • Rational design and synthesis of new quorum-sensing inhibitors derived from acylated homoserine lactones and natural products from garlic
    • Persson T., Hansen T.H., Rasmussen T.B., Skinderso M.E., Givskov M., and Nielsen J. Rational design and synthesis of new quorum-sensing inhibitors derived from acylated homoserine lactones and natural products from garlic. Org. Biomol. Chem. 3 (2005) 253-262
    • (2005) Org. Biomol. Chem. , vol.3 , pp. 253-262
    • Persson, T.1    Hansen, T.H.2    Rasmussen, T.B.3    Skinderso, M.E.4    Givskov, M.5    Nielsen, J.6
  • 11
    • 25144448174 scopus 로고    scopus 로고
    • Small molecule inhibitors of bacterial quorum sensing and biofilm formation
    • Geske G.D., Wezeman R.J., Siegel A.P., and Blackwell H.E. Small molecule inhibitors of bacterial quorum sensing and biofilm formation. J. Am. Chem. Soc. 127 (2005) 12762-12763
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 12762-12763
    • Geske, G.D.1    Wezeman, R.J.2    Siegel, A.P.3    Blackwell, H.E.4
  • 12
    • 28644445326 scopus 로고    scopus 로고
    • Quorum sensing inhibition: targeting chemical communication in gram-negative bacteria
    • Persson T., Givskov M., and Nielsen J. Quorum sensing inhibition: targeting chemical communication in gram-negative bacteria. Curr. Med. Chem. 12 (2005) 3103-3115
    • (2005) Curr. Med. Chem. , vol.12 , pp. 3103-3115
    • Persson, T.1    Givskov, M.2    Nielsen, J.3
  • 13
    • 33644849230 scopus 로고    scopus 로고
    • Quorum-sensing inhibitors as anti-pathogenic drugs
    • Rasmussen T.B., and Givskov M. Quorum-sensing inhibitors as anti-pathogenic drugs. Int. J. Med. Microbiol. 296 (2006) 149-161
    • (2006) Int. J. Med. Microbiol. , vol.296 , pp. 149-161
    • Rasmussen, T.B.1    Givskov, M.2
  • 15
    • 0037156349 scopus 로고    scopus 로고
    • New synthetic analogues of N-acyl homoserine lactones as agonists or antagonists of transcriptional regulators involved in bacterial quorum sensing
    • Reverchon S., Chantegrel B., Deshayes C., Doutheau A., and Cotte-Pattat N. New synthetic analogues of N-acyl homoserine lactones as agonists or antagonists of transcriptional regulators involved in bacterial quorum sensing. Bioorg. Med. Chem. Lett. 12 (2002) 1153-1157
    • (2002) Bioorg. Med. Chem. Lett. , vol.12 , pp. 1153-1157
    • Reverchon, S.1    Chantegrel, B.2    Deshayes, C.3    Doutheau, A.4    Cotte-Pattat, N.5
  • 18
    • 17144443830 scopus 로고    scopus 로고
    • Interaction between peroxisome proliferator-activated receptor gamma and its agonists: docking study of oximes having 5-benzyl-2,4-thiazolidinedione
    • Iwata Y., Miyamoto S., Takamura M., Yanagisawa H., and Kasuya A. Interaction between peroxisome proliferator-activated receptor gamma and its agonists: docking study of oximes having 5-benzyl-2,4-thiazolidinedione. J. Mol. Graph. Model. 19 (2001) 536-542
    • (2001) J. Mol. Graph. Model. , vol.19 , pp. 536-542
    • Iwata, Y.1    Miyamoto, S.2    Takamura, M.3    Yanagisawa, H.4    Kasuya, A.5
  • 20
    • 34548346101 scopus 로고    scopus 로고
    • SYBYL, Molecular Modeling System, Tripos Associates Inc., 1699 S. Hanley Road, St Louis, MO 63144-62913, USA.
  • 21
    • 34548345019 scopus 로고    scopus 로고
    • M.A. Thompson, ArgusLaB 4.0.1, Seattle, WA, planetaria Software LLC, 2004.
  • 22
    • 0037093644 scopus 로고    scopus 로고
    • Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field
    • Krieger E., Koraimann G., and Vriend G. Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field. Proteins 47 (2002) 393-402
    • (2002) Proteins , vol.47 , pp. 393-402
    • Krieger, E.1    Koraimann, G.2    Vriend, G.3
  • 24
    • 28844493693 scopus 로고    scopus 로고
    • Structure of the Escherichia coli quorum sensing protein SdiA: activation of the folding switch by acyl homoserine lactones
    • Yao Y., Martinez-Yamout M.A., Dickerson T.J., Brogan A.P., Wright P.E., and Dyson H.J. Structure of the Escherichia coli quorum sensing protein SdiA: activation of the folding switch by acyl homoserine lactones. J. Mol. Biol. 355 (2006) 262-273
    • (2006) J. Mol. Biol. , vol.355 , pp. 262-273
    • Yao, Y.1    Martinez-Yamout, M.A.2    Dickerson, T.J.3    Brogan, A.P.4    Wright, P.E.5    Dyson, H.J.6
  • 25
    • 0034623005 scopus 로고    scopus 로고
    • A novel method for fast and accurate multiple sequence alignment
    • Notredame C., Higgins D.G., Heringa J., and T-Coffee:. A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302 (2000) 205-217
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3    T-Coffee4
  • 26
    • 0042622380 scopus 로고    scopus 로고
    • SWISS-MODEL: an automated protein homology-modeling server
    • Schwede T., Kopp J., Guex N., and Peitsch M.C. SWISS-MODEL: an automated protein homology-modeling server. Nucl. Acids Res. 31 (2003) 3381-3385
    • (2003) Nucl. Acids Res. , vol.31 , pp. 3381-3385
    • Schwede, T.1    Kopp, J.2    Guex, N.3    Peitsch, M.C.4
  • 27
    • 0027968068 scopus 로고
    • Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22 (1994) 4673-4680
    • (1994) Nucl. Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.