G protein-coupled receptors self-assemble in dynamics simulations of model bilayers

Journal of the American Chemical Society

Volumn 129, Issue 33, 2007, Pages 10126-10132

  Periole, Xavier ^a   Huber, Thomas ^b   Marrink, Siewert Jan ^a   Sakmar, Thomas P ^b  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MEMBRANES; MOLECULAR DYNAMICS; MOLECULAR MODELING; PHOSPHOLIPIDS; SELF ASSEMBLY;

BILAYER MEMBRANES; COARSE-GRAIN MOLECULAR DYNAMICS (CGMD) MODELS; MEMBRANE PROTEIN; OLIGOMERIC STRUCTURES;

PROTEINS;

G PROTEIN COUPLED RECEPTOR; PHOSPHOLIPID;

ARTICLE; BILAYER MEMBRANE; COMPUTER SIMULATION; MOLECULAR DYNAMICS; PHOSPHOLIPID MEMBRANE; PHYSICAL CHEMISTRY; PROTEIN ASSEMBLY; PROTEIN PROTEIN INTERACTION; REPRODUCIBILITY;

COMPUTER SIMULATION; HYDROPHOBICITY; LIPID BILAYERS; MODELS, MOLECULAR; RHODOPSIN; THERMODYNAMICS;

EID: 34548146523     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0706246     Document Type: Article

References (52)

1. Singer, S. J.; Nicolson, G. L. Science 1972, 175, 720-731.
2. Vereb, G.; Szollosi, J.; Matko, J.; Nagy, P.; Farkas, T.; Vigh, L.; Matyus, L.; Waldmann, T. A.; Damjanovich, S. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 8053-8058.
3. Engelman, D. M. Nature 2005, 438, 578-580.
4. Fotiadis, D.; Liang, Y.; Filipek, S.; Saperstein, D. A.; Engel, A.; Palczewski K. Nature 2003, 421, 127-128.
5. Milligan, G. Mol. Pharmacol. 2004, 66, 1-7.
6. Terrillon, S.; Bouvier, M. EMBO Rep. 2004, 5, 30-34.
7. James, J. R.; Oliveira, M. I.; Carmo, A. M.; Iaboni, A.; Davis, S. J. Nat. Methods 2006, 3, 1001-1006.
8. Zimmerberg, J.; Gawrisch, K. Nat. Chem. Biol. 2006, 2, 564-567.
9. Killian, J. A. Biochim. Biophys. Acta 1998, 1376, 401-416.
10. Lee, A. G. Biochim. Biophys. Acta-Biomembr. 2004, 1666, 62-87.
11. Kusumi, A.; Hyde, J. S. Biochemistry 1982, 21, 5978-5983.
12. Pearson, L. T.; Chan, S. I.; Lewis, B. A.; Engelman, D. M. Biophys. J. 1983, 43, 167-174.
13. Ryba, N. J. P.; Marsh, D. Biochemistry 1992, 31, 7511-7518.
14. Botelho, A. V.; Huber, T.; Sakmar, T. P.; Brown, M. F. Biophys. J. 2006, 91, 4464-4477.
15. Fanelli, F.; De Benedetti, P. G. Chem. Rev. 2005, 105, 3297-3351.
16. Palczewski, K. Annu. Rev. Biochem. 2006, 75, 743-767.
17. Gil, T.; Ipsen, J. H.; Mouritsen, O. G.; Sabra, M. C.; Sperotto, M. M.; Zuckermann, M. J. Biochim. Biophys. Acta 1998, 1376, 245-266.
18. Jensen, M. Ø.; Mouritsen, O. G. Biochim. Biophys. Acta 2004, 1666, 205-226.
19. Tieleman, D. P.; Forest, L. R.; Sansom, M. S.; Berendsen, H. J. Biochemistry 1998, 37, 17554-17561.
20. Bond, P. J.; Sansom, M. S. P. J. Am. Chem. Soc. 2006, 128, 2697-2704.
21. van Gunsteren, W. F.; et al. Angew. Chem., Int. Ed. 2006, 45, 4064-4092.
22. Marrink, S. J.; de Vries, A. H.; Mark, A. E. J. Phys. Chem. B 2004, 108, 750-760.
23. Shih, A. Y.; Arkhipov, A.; Freddolino, P. L.; Schulten, K. J. Phys. Chem. B 2006, 110, 3674-3684.
24. Smeijers, A. F.; Pieterse, K.; Markvoort, A. J.; Hilbers, P. A. J. J. Phys. Chem. B 2006, 110, 13614-13623.
25. Smit, B.; Hilbers, P. A. J.; Esselink, K.; Rupert, L. A. M.; Vanos, N. M.; Schlijper, A. G. Nature 1990, 348, 624-625.
26. Ayton, G. S.; Voth, G. A. J. Struct. Biol. 2007, 157, 570-578.
27. Marrink, S. J.; Mark, A. E. Biophys. J. 2004, 87, 3894-3900.
28. Marrink, S. J.; Risselada, J.; Mark, A. E. Chem. Phys. Lipids 2005, 135, 223-244.
29. Gabdoulline, R. R.; Wade, R. C. Curr. Opin. Struct. Biol. 2002, 12, 204-213.
30. Grunberg, R.; Leckner, J.; Nilges, M. Structure 2004, 12, 2125-2136.
31. Tang, C.; Iwahara, J.; Clore, G. M. Nature 2006, 444, 383-386.
32. Okada, T.; Fujiyoshi, Y.; Silow, M.; Navarro, J.; Landau, E. M.; Shichida, Y. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 5982-5987.
33. Mehler, E. L.; Periole, X.; Hassan, S. A.; Weinstein, H. J. Comput.-Aided Mol. Des. 2002, 16, 841-853.
34. Berendsen, H. J. C.; Vanderspoel, D.; Vandrunen, R. Comput. Phys. Commun. 1995, 91, 43-56.
35. Lindahl, E.; Hess, B.; van der Spoel, D. J. Mol. Model. 2001, 7, 306-317.
36. van der Spoel, D.; Lindahl, E.; Hess, B.; Groenhof, G.; Mark, A. E.; Berendsen, H. J. C. J. Comput. Chem. 2005, 26, 1701-1718.
37. Humphrey, W.; Dalke, A.; Schulten, K. J. Mol. Graph. 1996, 14, 33-8, 27-8.
38. Huber, T.; Botelho, A. V.; Beyer, K.; Brown, M. F. Biophys. J. 2004, 84, 2078-2100.
39. Saffman, P. G.; Delbrück, M. Proc. Natl. Acad. Sci. U.S.A. 1975, 72, 3111-3113.
40. Gambin, Y.; Lopez-Esparza, R.; Reffay, M.; Sierecki, E.; Gov, N. S.; Genest, M.; Hodges, R. S.; Urbach, W. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 2098-2102.
41. Guigas, G.; Weiss, M. Biophys. J 2006, 91, 2393-2398.
42. Chen, Y. S.; Hubbell, W. L. Exp. Eye Res. 1973, 17, 517-532.
43. Scherfter, G. F. X.; Hargrave, P. A. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 11578-11582.
44. Liang, Y.; Fotiadis, D.; Filipek, S.; Saperstein, D. A.; Palczewski, K.; Engel, A. J. Biol. Chem. 2003, 278, 21655-21662.
45. Bohinc, K.; Kralj-Iglič, V.; May, S. J. Chem. Phys. 2003, 119, 7435-7444.
46. Lagüe, P.; Zuckermann, M. J.; Roux, B. Biophys. J 2000, 79, 2867-2879
47. Helms, V. EMBO Rep. 2002, 3, 1133-1138.
48. Cone, R. A. Nat.-New Biol. 1972, 236, 39-43.
49. Liebman, P. A.; Entine, G. Science 1974, 185, 457-459.
50. Chabre, M.; Cone, R.; Saibil, H. Nature 2003, 426, 30-31.
51. Chabre, M.; le Maire, M. Biochemistry 2005, 44, 9395-9403.
52. Takamori, S.; et al. Cell 2006, 127, 831-846.