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Volumn 39, Issue 11, 2007, Pages 2888-2896

Soil differentiation using fingerprint Fourier transform infrared spectroscopy, chemometrics and genetic algorithm-based feature selection

Author keywords

DFA; FT IR; Genetic algorithm; PCA; Reclamation; Spectra

Indexed keywords

FEATURE EXTRACTION; FOURIER TRANSFORM INFRARED SPECTROSCOPY; GENETIC ALGORITHMS; PRINCIPAL COMPONENT ANALYSIS;

EID: 34547731355     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2007.05.032     Document Type: Article
Times cited : (39)

References (54)
  • 2
    • 84926211026 scopus 로고
    • Loss-on-ignition as an estimate of organic matter and organic carbon in non-calcareous soils
    • Ball D.F. Loss-on-ignition as an estimate of organic matter and organic carbon in non-calcareous soils. Journal of Soil Science 15 (1964) 84-91
    • (1964) Journal of Soil Science , vol.15 , pp. 84-91
    • Ball, D.F.1
  • 3
    • 0034009509 scopus 로고    scopus 로고
    • Changes in microbial community metabolism and labile organic matter fractions as early indicators of the impact of management on soil biological quality
    • Bending G.D., Putland C., and Rayns F. Changes in microbial community metabolism and labile organic matter fractions as early indicators of the impact of management on soil biological quality. Biology and Fertility of Soils 31 (2000) 78-84
    • (2000) Biology and Fertility of Soils , vol.31 , pp. 78-84
    • Bending, G.D.1    Putland, C.2    Rayns, F.3
  • 4
    • 0030859519 scopus 로고    scopus 로고
    • Genetic algorithms as a method for variable selection in multiple linear regression and partial least squares regression, with applications to pyrolysis mass spectrometry
    • Broadhurst D., Goodacre R., Jones A., Rowland J.J., and Kell D.B. Genetic algorithms as a method for variable selection in multiple linear regression and partial least squares regression, with applications to pyrolysis mass spectrometry. Analytica Chimica Acta 348 (1997) 71-86
    • (1997) Analytica Chimica Acta , vol.348 , pp. 71-86
    • Broadhurst, D.1    Goodacre, R.2    Jones, A.3    Rowland, J.J.4    Kell, D.B.5
  • 5
    • 0034898780 scopus 로고    scopus 로고
    • The structure of microbial communities in soil and the lasting impact of cultivation
    • Buckley D.H., and Schmidt T.M. The structure of microbial communities in soil and the lasting impact of cultivation. Microbial Ecology 42 (2001) 11-21
    • (2001) Microbial Ecology , vol.42 , pp. 11-21
    • Buckley, D.H.1    Schmidt, T.M.2
  • 7
    • 0030943972 scopus 로고    scopus 로고
    • Analysis of carboxyl groups in soil humic acids by a wet chemical method, Fourier-transform infrared spectrophotometry, and solution-state carbon-13 nuclear magnetic resonance. A comparative study
    • Celi L., Schnitzer M., and Nègre M. Analysis of carboxyl groups in soil humic acids by a wet chemical method, Fourier-transform infrared spectrophotometry, and solution-state carbon-13 nuclear magnetic resonance. A comparative study. Soil Science 162 (1997) 189-197
    • (1997) Soil Science , vol.162 , pp. 189-197
    • Celi, L.1    Schnitzer, M.2    Nègre, M.3
  • 9
    • 0242407457 scopus 로고    scopus 로고
    • Near infrared reflectance spectroscopy for determination of organic matter fractions including microbial biomass in coniferous forest soils
    • Coûteaux M.M., Rovira P., and Berg B. Near infrared reflectance spectroscopy for determination of organic matter fractions including microbial biomass in coniferous forest soils. Soil Biology & Biochemistry 35 (2003) 1587-1600
    • (2003) Soil Biology & Biochemistry , vol.35 , pp. 1587-1600
    • Coûteaux, M.M.1    Rovira, P.2    Berg, B.3
  • 10
    • 0022928032 scopus 로고
    • Simultaneous determination of moisture, organic-carbon, and total nitrogen by near-infrared reflectance spectrophotometry
    • Dalal R.C., and Henry R.J. Simultaneous determination of moisture, organic-carbon, and total nitrogen by near-infrared reflectance spectrophotometry. Soil Science Society of America Journal 50 (1986) 120-123
    • (1986) Soil Science Society of America Journal , vol.50 , pp. 120-123
    • Dalal, R.C.1    Henry, R.J.2
  • 11
    • 0034887050 scopus 로고    scopus 로고
    • Changing resources assessment of leaf litter carbohydrate resource change at a microbial scale of resolution
    • Dighton J., Mascarenhas M., and Arbuckle-Keil G.A. Changing resources assessment of leaf litter carbohydrate resource change at a microbial scale of resolution. Soil Biology & Biochemistry 33 (2001) 1429-1432
    • (2001) Soil Biology & Biochemistry , vol.33 , pp. 1429-1432
    • Dighton, J.1    Mascarenhas, M.2    Arbuckle-Keil, G.A.3
  • 12
    • 4544305987 scopus 로고    scopus 로고
    • Comparison of phospholipid fatty acid (PLFA) and total soil fatty acid methyl esters (TSFAME) for characterizing soil microbial communities
    • Drenovsky R.E., Elliott G.N., Graham K.J., and Scow K.M. Comparison of phospholipid fatty acid (PLFA) and total soil fatty acid methyl esters (TSFAME) for characterizing soil microbial communities. Soil Biology & Biochemistry 36 (2004) 1793-1800
    • (2004) Soil Biology & Biochemistry , vol.36 , pp. 1793-1800
    • Drenovsky, R.E.1    Elliott, G.N.2    Graham, K.J.3    Scow, K.M.4
  • 13
    • 2142825652 scopus 로고    scopus 로고
    • Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L. (Oligochaeta: Lumbricidae)
    • Egert M., Marhan S., Wagner B., Scheu S., and Friedrich M.W. Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L. (Oligochaeta: Lumbricidae). FEMS Microbiology Ecology 48 (2004) 187-197
    • (2004) FEMS Microbiology Ecology , vol.48 , pp. 187-197
    • Egert, M.1    Marhan, S.2    Wagner, B.3    Scheu, S.4    Friedrich, M.W.5
  • 14
    • 2942556832 scopus 로고    scopus 로고
    • Characterizing organic matter of soil aggregate coatings and biopores using Fourier transform infrared spectroscopy
    • Ellerbrock R.H., and Gerke H.H. Characterizing organic matter of soil aggregate coatings and biopores using Fourier transform infrared spectroscopy. European Journal of Soil Science 55 (2004) 219-228
    • (2004) European Journal of Soil Science , vol.55 , pp. 219-228
    • Ellerbrock, R.H.1    Gerke, H.H.2
  • 15
    • 0345320390 scopus 로고    scopus 로고
    • Functional analysis of soil organic matter as affected by long-term manurial treatment
    • Ellerbrock R.H., Höhn A., and Rogasik J. Functional analysis of soil organic matter as affected by long-term manurial treatment. European Journal of Soil Science 50 (1999) 65-71
    • (1999) European Journal of Soil Science , vol.50 , pp. 65-71
    • Ellerbrock, R.H.1    Höhn, A.2    Rogasik, J.3
  • 16
    • 34547820700 scopus 로고    scopus 로고
    • Ellerbrock, R.H., Höhn, A., Gerke, H.H., 2001. FT-IR studies on soil organic matter from long-term field experiments. In: Rees, R.M., Ball, B.C., Cambell, C.D., Watson, C. A. (Eds.), Sustainable Management of Soil Organic Matter, pp. 34-41
  • 18
    • 0037227464 scopus 로고    scopus 로고
    • Variations in microbial community composition through two soil depth profiles
    • Fierer N., Schimel J.P., and Holden P.A. Variations in microbial community composition through two soil depth profiles. Soil Biology & Biochemistry 35 (2003) 167-176
    • (2003) Soil Biology & Biochemistry , vol.35 , pp. 167-176
    • Fierer, N.1    Schimel, J.P.2    Holden, P.A.3
  • 19
    • 0034823968 scopus 로고    scopus 로고
    • An attempt to differentiate Pseudomonas spp. and other soil bacteria by FT-IR spectroscopy
    • Filip Z., and Hermann S. An attempt to differentiate Pseudomonas spp. and other soil bacteria by FT-IR spectroscopy. European Journal of Soil Biochemistry 37 (2001) 137-143
    • (2001) European Journal of Soil Biochemistry , vol.37 , pp. 137-143
    • Filip, Z.1    Hermann, S.2
  • 20
    • 0037338334 scopus 로고    scopus 로고
    • Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils
    • Girvan M.S., Bullimore J., Pretty J.N., Osborn A.M., and Ball A.S. Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology 69 (2003) 1800-1809
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 1800-1809
    • Girvan, M.S.1    Bullimore, J.2    Pretty, J.N.3    Osborn, A.M.4    Ball, A.S.5
  • 22
    • 0031781727 scopus 로고    scopus 로고
    • Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks
    • Goodacre R., Timmins E.M., Burton R., Kaderbhai N., Woodward A.M., Kell D.B., and Rooney P.J. Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks. Microbiology 144 (1998) 1157-1170
    • (1998) Microbiology , vol.144 , pp. 1157-1170
    • Goodacre, R.1    Timmins, E.M.2    Burton, R.3    Kaderbhai, N.4    Woodward, A.M.5    Kell, D.B.6    Rooney, P.J.7
  • 24
    • 2542502757 scopus 로고    scopus 로고
    • Organic matter status and the size, activity and metabolic diversity of the soil microflora as indicators of the success of rehabilitation of mined sand dunes
    • Graham M.H., and Haynes R.J. Organic matter status and the size, activity and metabolic diversity of the soil microflora as indicators of the success of rehabilitation of mined sand dunes. Biology and Fertility of Soils 39 (2004) 429-437
    • (2004) Biology and Fertility of Soils , vol.39 , pp. 429-437
    • Graham, M.H.1    Haynes, R.J.2
  • 25
    • 0028835685 scopus 로고
    • Identification of some bacterial cell components by FT-IR spectroscopy
    • Helm D., and Naumann D. Identification of some bacterial cell components by FT-IR spectroscopy. FEMS Microbiology Letters 126 (1995) 75-80
    • (1995) FEMS Microbiology Letters , vol.126 , pp. 75-80
    • Helm, D.1    Naumann, D.2
  • 26
    • 0000880144 scopus 로고
    • Relationship between soil organic carbon and microbial biomass on chronosequences of reclamation sites
    • Insam H., and Domsch K.H. Relationship between soil organic carbon and microbial biomass on chronosequences of reclamation sites. Microbial Ecology 15 (1988) 177-188
    • (1988) Microbial Ecology , vol.15 , pp. 177-188
    • Insam, H.1    Domsch, K.H.2
  • 27
    • 16444371874 scopus 로고    scopus 로고
    • Genetic algorithm optimisation for pre-processing and variable selection of spectroscopic data
    • Jarvis R.M., and Goodacre R. Genetic algorithm optimisation for pre-processing and variable selection of spectroscopic data. Bioinformatics 21 (2005) 860-868
    • (2005) Bioinformatics , vol.21 , pp. 860-868
    • Jarvis, R.M.1    Goodacre, R.2
  • 29
    • 1642312092 scopus 로고    scopus 로고
    • High-throughput metabolic fingerprinting of legume silage fermentations via Fourier transform infrared spectroscopy and chemometrics
    • Johnson H.E., Broadhurst D., Kell D.B., Theodorou M.K., Merry R.J., and Griffith G.W. High-throughput metabolic fingerprinting of legume silage fermentations via Fourier transform infrared spectroscopy and chemometrics. Applied and Environmental Microbiology 70 (2004) 1583-1592
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 1583-1592
    • Johnson, H.E.1    Broadhurst, D.2    Kell, D.B.3    Theodorou, M.K.4    Merry, R.J.5    Griffith, G.W.6
  • 31
    • 0036405388 scopus 로고    scopus 로고
    • Microbial communities and their interactions in soil and rhizosphere ecosystems
    • Kent A.D., and Triplett E.W. Microbial communities and their interactions in soil and rhizosphere ecosystems. Annual Review of Microbiology 56 (2002) 211-236
    • (2002) Annual Review of Microbiology , vol.56 , pp. 211-236
    • Kent, A.D.1    Triplett, E.W.2
  • 32
    • 26444527398 scopus 로고    scopus 로고
    • Soil identification and chemometrics for direct determination of nitrate in soils using FTIR-ATR mid-infrared spectroscopy
    • Linker R., Shmulevich I., Kenny A., and Shaviv A. Soil identification and chemometrics for direct determination of nitrate in soils using FTIR-ATR mid-infrared spectroscopy. Chemosphere 61 (2005) 652-658
    • (2005) Chemosphere , vol.61 , pp. 652-658
    • Linker, R.1    Shmulevich, I.2    Kenny, A.3    Shaviv, A.4
  • 33
    • 0032429865 scopus 로고    scopus 로고
    • Soil development on restored opencast coal sites with particular reference to organic matter and aggregate stability
    • Malik A., and Scullion J. Soil development on restored opencast coal sites with particular reference to organic matter and aggregate stability. Soil Use Management 14 (1998) 234-239
    • (1998) Soil Use Management , vol.14 , pp. 234-239
    • Malik, A.1    Scullion, J.2
  • 34
  • 35
    • 24944480408 scopus 로고    scopus 로고
    • Vibrational spectroscopy: a vanishing discipline?
    • Meier R.J. Vibrational spectroscopy: a vanishing discipline?. Chemical Society Reviews 34 (2005) 743-752
    • (2005) Chemical Society Reviews , vol.34 , pp. 743-752
    • Meier, R.J.1
  • 36
    • 0025919906 scopus 로고
    • Carbon and nitrogen analysis of soil fractions using near-infrared reflectance spectroscopy
    • Morra M.J., Hall M.H., and Freeborn L.L. Carbon and nitrogen analysis of soil fractions using near-infrared reflectance spectroscopy. Soil Science Society of America Journal 55 (1991) 288-291
    • (1991) Soil Science Society of America Journal , vol.55 , pp. 288-291
    • Morra, M.J.1    Hall, M.H.2    Freeborn, L.L.3
  • 37
    • 34547809847 scopus 로고    scopus 로고
    • Naumann, D., Schultz, C.P., Helm, D., 1996. What can infrared spectroscopy tell us about the structure and composition of intact bacterial cells? In: Mantsch, H.H., Chapman, D. (Eds.), Infrared Spectroscopy of Biomolecules, pp. 279-310.
  • 38
    • 0036263746 scopus 로고    scopus 로고
    • Intraspecific diversity of Brevibacterium linens, Corynebacterium glutamicum and Rhodococcus erythropolis based on partial 16S rDNA sequence analysis and Fourier-transform infrared (FT-IR) spectroscopy
    • Oberreuter H., Charzinski J., and Scherer S. Intraspecific diversity of Brevibacterium linens, Corynebacterium glutamicum and Rhodococcus erythropolis based on partial 16S rDNA sequence analysis and Fourier-transform infrared (FT-IR) spectroscopy. Microbiology 148 (2002) 1523-1532
    • (2002) Microbiology , vol.148 , pp. 1523-1532
    • Oberreuter, H.1    Charzinski, J.2    Scherer, S.3
  • 41
  • 43
    • 0035673399 scopus 로고    scopus 로고
    • Degeneration of solventogenic Clostridium strains monitored by Fourier transform infrared spectroscopy of bacterial cells
    • Schuster K.C., Goodacre R., Gapes J.R., and Young M. Degeneration of solventogenic Clostridium strains monitored by Fourier transform infrared spectroscopy of bacterial cells. Journal of Industrial Microbiology and Biotechnology 27 (2001) 314-321
    • (2001) Journal of Industrial Microbiology and Biotechnology , vol.27 , pp. 314-321
    • Schuster, K.C.1    Goodacre, R.2    Gapes, J.R.3    Young, M.4
  • 45
    • 0033988984 scopus 로고    scopus 로고
    • Earthworm activity affecting organic matter, aggregation and microbial activity in soils restored after open cast mining for coal
    • Scullion J., and Malik A. Earthworm activity affecting organic matter, aggregation and microbial activity in soils restored after open cast mining for coal. Soil Biology and Biochemistry 32 (2000) 119-126
    • (2000) Soil Biology and Biochemistry , vol.32 , pp. 119-126
    • Scullion, J.1    Malik, A.2
  • 48
    • 0141676330 scopus 로고    scopus 로고
    • Long-term effects of mineral versus organic fertilizers on activity and structure of the methanotrophic community in agricultural soils
    • Seghers D., Top E.M., Reheul D., Bulcke R., Boeckx P., Verstraete W., and Siciliano S.D. Long-term effects of mineral versus organic fertilizers on activity and structure of the methanotrophic community in agricultural soils. Environmental Microbiology 5 (2003) 867-877
    • (2003) Environmental Microbiology , vol.5 , pp. 867-877
    • Seghers, D.1    Top, E.M.2    Reheul, D.3    Bulcke, R.4    Boeckx, P.5    Verstraete, W.6    Siciliano, S.D.7
  • 49
    • 0036242834 scopus 로고    scopus 로고
    • Development of reflectance spectral libraries for characterization of soil properties
    • Shepherd K.D., and Walsh M.G. Development of reflectance spectral libraries for characterization of soil properties. Soil Science Society of America Journal 66 (2002) 988-998
    • (2002) Soil Science Society of America Journal , vol.66 , pp. 988-998
    • Shepherd, K.D.1    Walsh, M.G.2
  • 50
    • 0036273024 scopus 로고    scopus 로고
    • Structure and activity of the bacterial community in the rhizosphere of different plant species and the effect of arbuscular mycorrhizal colonisation
    • Söderberg K.H., Olsson P.A., and Bååth E. Structure and activity of the bacterial community in the rhizosphere of different plant species and the effect of arbuscular mycorrhizal colonisation. FEMS Microbiology Ecology 40 (2002) 223-231
    • (2002) FEMS Microbiology Ecology , vol.40 , pp. 223-231
    • Söderberg, K.H.1    Olsson, P.A.2    Bååth, E.3
  • 51
    • 0031964328 scopus 로고    scopus 로고
    • Rapid differentiation of closely related Candida species and strains by pyrolysis-mass spectrometry and Fourier transform-infrared spectroscopy
    • Timmins E.M., Howell S.A., Alsberg B.K., Noble W.C., and Goodacre R. Rapid differentiation of closely related Candida species and strains by pyrolysis-mass spectrometry and Fourier transform-infrared spectroscopy. Journal of Clinical Microbiology 36 (1998) 367-374
    • (1998) Journal of Clinical Microbiology , vol.36 , pp. 367-374
    • Timmins, E.M.1    Howell, S.A.2    Alsberg, B.K.3    Noble, W.C.4    Goodacre, R.5
  • 53
    • 1242276354 scopus 로고    scopus 로고
    • The rapid identification of Acinetobacter species using Fourier transform infrared spectroscopy
    • Winder C.L., Carr E., Goodacre R., and Seviour R. The rapid identification of Acinetobacter species using Fourier transform infrared spectroscopy. Journal of Applied Microbiology 96 (2004) 328-339
    • (2004) Journal of Applied Microbiology , vol.96 , pp. 328-339
    • Winder, C.L.1    Carr, E.2    Goodacre, R.3    Seviour, R.4
  • 54
    • 0036802867 scopus 로고    scopus 로고
    • Early salt stress effects on the changes in chemical composition in leaves of ice plant and Arabidopsis. A Fourier transform infrared spectroscopy study
    • Yang J., and Yen H.E. Early salt stress effects on the changes in chemical composition in leaves of ice plant and Arabidopsis. A Fourier transform infrared spectroscopy study. Plant Physiology 130 (2002) 1032-1042
    • (2002) Plant Physiology , vol.130 , pp. 1032-1042
    • Yang, J.1    Yen, H.E.2


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