Rapid differentiation of closely related Candida species and strains by pyrolysis-mass spectrometry and Fourier transform-infrared spectroscopy

Journal of Clinical Microbiology

Volumn 36, Issue 2, 1998, Pages 367-374

  Timmins, Éadaoin M ^a   Howell, Susan A ^b   Alsberg, Bjørn K ^a   Noble, William C ^b   Goodacre, Royston ^a  

^a ABERYSTWYTH UNIVERSITY   (United Kingdom)

^b ST THOMAS HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANDIDA; FUNGUS IDENTIFICATION; INFRARED SPECTROSCOPY; NONHUMAN; PRIORITY JOURNAL; PYROLYSIS; STRAIN DIFFERENCE;

CANDIDA; CANDIDA ALBICANS; CANDIDA DUBLINIENSIS; CANDIDA STELLATOIDEA; FUNGI;

EID: 0031964328     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.36.2.367-374.1998     Document Type: Article

References (44)

1. Allen, C. M., and F. M. Beck. 1983. Strain related differences in pathogenicity of Candida albicans for oral mucosa. J. Infect. Dis. 147:1036-1040.
2. Anthony, R. M., J. Midgley, S. P. Sweet, and S. A. Howell. 1995. Multiple strains of Candida albicans in the oral cavity of HIV positive and HIV negative patients. Microb. Ecol. Health Dis. 8:23-30.
3. Barnett, J. A., R. W. Payne, and D. Yarrow. 1990. Descriptions of the species arranged alphabetically, p. 79-695. Yeasts: characteristics and identification, 2nd ed. Cambridge University Press, Cambridge, United Kingdom.
4. Bouffard, S. P., J. E. Katon, A. J. Sommer, and N. D. Danielson. 1994. Development of microchannel thin layer chromatography with infrared microspectroscopic detection. Anal. Chem. 66:1937-1940.
5. Causton, D. R. 1987. A biologist's advanced mathematics. Allen and Unwin, London, United Kingdom.
6. Ghannoum, M. A., I. Swairjo, and D. R. Soll. 1990. Variation in lipid and sterol contents in Candida albicans white and opaque phenotypes. J. Med. Vet. Mycol. 28:103-115.
7. Glauninger, G., K. A. Kovar, and V. Hoffmann. 1990. Possibilities and limits of an online coupling of thin-layer chromatography and FTIR spectroscopy. Fresenius' J. Anal. Chem. 338:710-716.
8. Goodacre, R. 1994. Characterisation and quantification of microbial systems using pyrolysis mass spectrometry: introducing neural networks to analytical pyrolysis. Microbiol. Eur. 2(2):16-22.
9. Goodacre, R., A. Hartmann, J. E. Beringer, and R. C. W. Berkeley. 1991. The use of pyrolysis mass spectrometry in the characterization of Rhizobium meliloti. Lett. Appl. Microbiol. 13:157-160.
10. Goodacre, R., and D. B. Kell. 1996. Pyrolysis mass spectrometry and its applications in biotechnology. Curr. Opin. Biotechnol. 7:20-28.
11. Goodacre, R., M. J. Neal, and D. B. Kell. 1994. Rapid and quantitative analysis of the pyrolysis mass spectra of complex binary and tertiary mixtures using multivariate calibration and artificial neural networks. Anal. Chem. 66:1070-1085.
12. Goodacre, R., M. J. Neal, D. B. Kell, L. W. Greenham, W. C. Noble, and R. G. Harvey. 1994. Rapid identification using pyrolysis mass spectrometry and artificial neural networks of Propionibacterium acnes isolated from dogs. J. Appl. Bacteriol. 76:124-134.
13. Goodacre, R., É. M. Timmins, P. J. Rooney, J. J. Rowland, and D. B. Kell. 1996. Rapid identification of Streptococcus and Enterococcus species using diffuse reflectance-absorbance Fourier transform infrared spectroscopy and artificial neural networks. FEMS Microbiol. Lett. 140:233-239.
14. Goodacre, R., S. Trew, C. Wrigley-Jones, M. J. Neal, J. Maddock, T. W. Ottley, N. Porter, and D. B. Kell. 1994. Rapid screening for metabolite overproduction in fermentor broths using pyrolysis mass spectrometry with multivariate calibration and artificial neural networks. Biotechnol. Bioeng. 44:1205-1216.
15. Gower, J. C. 1966. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53:325-338.
16. Gutteridge, C. S. 1987. Characterization of microorganisms by pyrolysis mass spectrometry. Methods Microbiol. 19:227-272.
17. Gutteridge, C. S., L. Vallis, and H. J. H. MacFie. 1985. Numerical methods in the classification of microorganisms by pyrolysis mass spectrometry, p. 369-401. In M. Goodfellow, D. Jones, and F. Priest (ed.), Computer-assisted bacterial systematics. Academic Press, London, United Kingdom.
18. Helm, D., H. Labischinski, G. Schallehn, and D. Naumann. 1991. Classification and identification of bacteria by Fourier transform infrared spectroscopy. J. Gen. Microbiol. 137:69-79.
19. Howell, S. A., R. M. Anthony, and E. Power. 1996. Application of RAPD and restriction enzyme analysis to the study of oral carriage of Candida albicans. Lett. Appl. Microbiol. 22:125-128.
20. Irwin, W. J. 1982. Analytical pyrolysis: a comprehensive guide. Marcel Dekker, Inc., New York, N.Y.
21. Jolliffe, I. T. 1986. Principal component analysis. Springer-Verlag, New York, N.Y.
22. Kwon-Chung, K. J., B. L. Wickes, and W. G. Merz. 1988. Association of electrophoretic karyotype of Candida stellatoidea with virulence for mice. Infect. Immun. 56:1814-1819.
23. MacFie, H. J. H., C. S. Gutteridge, and J. R. Norris. 1978. Use of canonical variates in differentiation of bacteria by pyrolysis gas-liquid chromatography. J. Gen. Microbiol. 104:67-74.
24. Magee, J. T., J. S. Brazier, I. K. Hosein, C. D. Ribeiro, D. W. Hill, A. Griffiths, C. Dacosta, A. J. Sinclair, and B. I. Duerden. 1993. An investigation of a nosocomial outbreak of Clostridium difficile by pyrolysis mass spectrometry. J. Med. Microbiol. 39:345-351.
25. Manly, B. F. J. 1994. Multivariate statistical methods: a primer. Chapman & Hall, London, United Kingdom.
26. Martinez, J. P., L. Gill, M. Casanova, J. Ribot-Lopez, J. G. De Lomas, and R. Sentandreu. 1990. Wall mannoproteins in cells from colonial phenotypic variants of Candida albicans. J. Gen. Microbiol. 136:2421-2432.
27. McCullough, M., B. Ross, and P. Reade. 1995. Characterization of genetically distinct subgroup of Candida albicans strains isolated from oral cavities of patients infected with human immunodeficiency virus. J. Clin. Microbiol. 33:696-700.
28. Meuzelaar, H. L. C., J. Haverkamp, and F. D. Hileman. 1982. Pyrolysis mass spectrometry of recent and fossil biomaterials. Elsevier, Amsterdam, The Netherlands.
29. Mitchell, M. B. 1993. Fundamentals and applications of diffuse reflectance infrared fourier transform (DRIFT) spectroscopy. Adv. Chem. Ser. 236:351-375.
30. Naumann, D., D. Helm, H. Labischinski, and P. Giesbrecht. 1991. The characterization of microorganisms by Fourier-transform infrared spectroscopy (FT-IR), p. 43-96. In W. H. Nelson (ed.), Modern techniques for rapid microbiological analysis. VCH Publishers, New York, N.Y.
31. Naumann, D., D. Helm, and C. Schultz. 1994. Characterization and identification of micro-organisms by FT-IR spectroscopy and FT-IR microscopy. In F. G. Priest, A. Ramos-Cormenzana, and B. J. Tindall (ed.), Bacterial diversity and systematics (FEMS Symposium No. 75). Plenum Press, New York, N.Y.
32. Neider, J. A. 1979. Genstat reference manual. Scientific and Social Service Program Library, University of Edinburgh, Edinburgh, United Kingdom.
33. Nelson, W. H., R. Manoharan, and J. F. Sperry. 1992. UV resonance Raman studies of bacteria. Appl. Spectrosc. Rev. 27:67-124.
34. Odds, F. C. 1988. Biological aspects of pathogenic Candida species, p. 7-15. In F. C. Odds (ed.), Candida and candidosis. Baillière Tindall, London, United Kingdom.
35. Pitcher, D. G., S. N. A., and R. J. Owen. 1989. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8:151-156.
36. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
37. Savitzky, A., and M. J. E. Golay. 1964. Smoothing and differentiation of data by simplified least squares procedures. Anal. Chem. 36:1627-1633.
38. Stevens, D. A., F. C. Odds, and S. Scherer. 1990. Application of DNA typing methods to Candida albicans epidemiology and correlations with phenotype. Rev. Infect. Dis. 12:258-266.
39. Sullivan, D., D. Bennet, M. Henman, P. Harwood, S. Flint, F. Mulcahy, D. Shanley, and D. Coleman. 1993. Oligonucleotide fingerprinting of isolates of Candida species other than C. albicans and of atypical Candida species from human immunodeficiency virus-positive and AIDS patients. J. Clin. Microbiol. 31:2124-2133.
40. Sullivan, D. J., T. J. Westerneng, K. A. Haynes, D. E. Bennett, and D. C. Coleman. 1995. Candida dubliniensis sp. nov.: phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals. Microbiology 141:1507-1521.
41. Timmins, É. M., and R. Goodacre. 1997. Rapid quantitative analysis of binary mixtures of Escherichia coli strains using pyrolysis mass spectrometry with multivariate calibration and artificial neural networks. J. Appl. Microbiol. 83:208-218.
42. Vazquez, J. A., A. Beckley, J. D. Sobel, and M. Zervos. 1991. Comparison of restriction enzyme analysis and pulsed-field gradient gel electrophoresis as typing systems for Candida albicans. J. Clin. Microbiol. 29:962-967.
43. Windig, W., J. Haverkamp, and P. G. Kistemaker. 1983. Interpretation of sets of pyrolysis mass spectra by discriminant analysis and graphical rotation. Anal. Chem. 55:81-88.
44. Wold, H. 1966. Estimation of principal components and related models by iterative least squares, p. 391-420. In K. R. Krishnaiah (ed.), Multivariate analysis. Academic Press, Inc., New York, N.Y.