Structure of telomeric chromatin in Drosophila

Biochemistry (Moscow)

Volumn 72, Issue 6, 2007, Pages 618-630

  Shpiz, S G ^a   Kalmykova, A I ^a  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

Chromatin; Drosophila; Retrotransposon; RNAi; Telomere

Indexed keywords

CHROMOSOMES; COMPLEXATION; DEGRADATION; FUNCTIONAL ANALYSIS;

CHROMATIN; DROSOPHILA; RETROTRANSPOSON; TELOMERE;

PROTEINS;

EUKARYOTA;

HISTONE;

ANIMAL; CHEMISTRY; CHROMATIN; CHROMOSOME; DROSOPHILA; GENETICS; METABOLISM; RETROPOSON; REVIEW; RNA INTERFERENCE; TELOMERE; ULTRASTRUCTURE;

ANIMALS; CHROMATIN; CHROMOSOMES; DROSOPHILA; HISTONES; RETROELEMENTS; RNA INTERFERENCE; TELOMERE;

EID: 34547266400     PISSN: 00062979     EISSN: 16083040     Source Type: Journal    
DOI: 10.1134/S0006297907060041     Document Type: Review

References (101)

1. Olovnikov, A. M. (1971) Dokl. Akad. Nauk SSSR, 201, 1496-1499.
2. Greider, C. W., and Blackburn, E. H. (1985) Cell, 43, 405-413.
3. Bryan, T. M., and Cech, T. R. (1999) Curr. Opin. Cell Biol., 11, 318-324.
4. Chan, S. W., and Blackburn, E. H. (2002) Oncogene, 21, 553-563.
5. Scherbakova, D. M., Zvereva, M. E., and Dontsova, O. A. (2006) Mol. Biol. (Moscow), 40, 580-594.
6. Biessmann, H., Valgeirsdottir, K., Lofsky, A., Chin, C., Ginther, B., Levis, R. W., and Pardue, M. L. (1992) Mol. Cell Biol., 12, 3910-3918.
7. Levis, R. W., Ganesan, R., Houtchens, K., Tolar, L. A., and Sheen, F. M. (1993) Cell, 75, 1083-1093.
8. Abad, J. P., de Pablos, B., Osoegawa, K., de Jong, P. J., Martin-Gallardo, A., and Villasante, A. (2004) Mol Biol. Evol., 21, 1620-1624.
9. Pardue, M. L., and DeBaryshe, P. G. (2003) Annu. Rev. Genet., 37, 485-511.
10. Okazaki, S., Ishikawa, H., and Fujiwara, H. (1995) Mol. Cell Biol., 15, 4545-4552.
11. Takahashi, H., Okazaki, S., and Fujiwara, H. (1997) Nucleic Acids Res., 25, 1578-1584.
12. Higashiyama, T., Noutoshi, Y., Fujie, M., and Yamada, T. (1997) EMBO J., 16, 3715-3723.
13. Eickbush, T. H. (1997) Science, 277, 911-912.
14. Nakamura, T. M., Morin, G. B., Chapman, K. B., Weinrich, S. L., Andrews, W. H., Lingner, J., Harley, C. B., and Cech, T. R. (1997) Science, 277, 955-959.
15. Taddei, A., Hediger, F., Neumann, F. R., and Gasser, S. M. (2004) Annu. Rev. Genet., 38, 305-345.
16. Henikoff, S. (1997) Curr. Opin. Cell Biol., 9, 388-395.
17. Cryderman, D. E., Morris, E. J., Biessmann, H., Elgin, S. C., and Wallrath, L. L. (1999) EMBO J., 18, 3724-3735.
18. Sadaie, M., Naito, T., and Ishikawa, F. (2003) Genes. Dev., 17, 2271-2282.
19. De Lange, T. (2004) Nat Rev. Mol. Cell Biol., 5, 323-329.
20. Smogorzewska, A., and de Lange, T. (2004) Annu. Rev. Biochem., 73, 177-208.
21. Goytisolo, F. A., and Blasco, M. A. (2002) Oncogene, 21, 584-591.
22. Kuimov, A. N. (2004) Biochemistry (Moscow), 69, 117-129.
23. Lee, H. W., Blasco, M. A., Gottlieb, G. J., Horner, J. W., 2nd, Greider, C. W., and DePinho, R. A. (1998) Nature, 392, 569-574.
24. Cenci, G., Ciapponi, L., and Gatti, M. (2005) Chromosoma, 114, 135-145.
25. Arkhipova, I. R., Lyubomirskaya, N. V., and Ilyin, Y. V. (1995) Drosophila Retrotransposons, R. G. Landes Company, Austin, Texas.
26. Biessmann, H., and Mason, J. M. (1988) EMBO J., 7, 1081-1086.
27. Kahn, T., Savitsky, M., and Georgiev, P. (2000) Mol. Cell Biol., 20, 7634-7642.
28. Savitsky, M., Kravchuk, O., Melnikova, L., and Georgiev, P. (2002) Mol. Cell Biol., 22, 3204-3218.
29. Melnikova, L., Biessmann, H., and Georgiev, P. (2005) Genetics, 170, 221-235.
30. George, J. A., DeBaryshe, P. G., Traverse, K. L., Celniker, S. E., and Pardue, M. L. (2006) Genome Res., 16, 1231-1240.
31. Abad, J. P., de Pablos, B., Osoegawa, K., de Jong, P. J., Martin-Gallardo, A., and Villasante, A. (2004) Mol. Biol. Evol., 21, 1613-1619.
32. Pardue, M. L., Danilevskaya, O. N., Lowenhaupt, K., Wong, J., and Erby, K. (1996) J. Mol. Evo., 43, 572-583.
33. Arkhipova, I. R., and Morrison, H. G. (2001) Proc. Natl. Acad. Sci. USA, 98, 14497-14502.
34. Biessmann, H., Champion, L. E., O'Hair, M., Ikenaga, K., Kasravi, B., and Mason, J. M. (1992) EMBO J., 11, 4459-4469.
35. Golubovsky, M. D., Konev, A. Y., Walter, M. F., Biessmann, H., and Mason, J. M. (2001) Genetics, 158, 1111-1123.
36. Rashkova, S., Karam, S. E., Kellum, R., and Pardue, M. L. (2002) J. Cell Biol., 159, 397-402.
37. Casacuberta, E., and Pardue, M. L. (2002) Genetics, 161, 1113-1124.
38. Casacuberta, E., and Pardue, M. L. (2003) Proc. Natl. Acad. Sci. USA, 100, 3363-3368.
39. Rashkova, S., Athanasiadis, A., and Pardue, M. L. (2003) J. Virol., 77, 6376-6384.
40. Fanti, L., Dorer, D. R., Berloco, M., Henikoff, S., and Pimpinelli, S. (1998) Chromosoma, 107, 286-292.
41. Cenci, G., Siriaco, G., Raffa, G. D., Kellum, R., and Gatti, M. (2003) Nat. Cell Biol., 5, 82-84.
42. Bi, X., Wei, S. C., and Rong, Y. S. (2004) Curr. Biol., 14, 1348-1353.
43. Ciapponi, L., Cenci, G., Ducau, J., Flores, C., Johnson-Schlitz, D., Gorski, M. M., Engels, W. R., and Gatti, M. (2004) Curr. Biol., 14, 1360-1366.
44. Oikemus, S. R., McGinnis, N., Queiroz-Machado, J., Tukachinsky, H., Takada, S., Sunkel, C. E., and Brodsky, M. H. (2004) Genes. Dev., 18, 1850-1861.
45. Silva, E., Tiong, S., Pedersen, M., Homola, E., Royou, A., Fasulo, B., Siriaco, G., and Campbell, S. D. (2004) Curr. Biol., 14, 1341-1347.
46. Song, Y. H., Mirey, G., Betson, M., Haber, D. A., and Settleman, J. (2004) Curr. Biol., 14, 1354-1359.
47. Perrini, B., Piacentini, L., Fanti, L., Altieri, F., Chichiarelli, S., Berloco, M., Turano, C., Ferraro, A., and Pimpinelli, S. (2004) Mol. Cell, 15, 467-476.
48. Badugu, R., Shareef, M. M., and Kellum, R. (2003) J. Biol. Chem., 278, 34491-34498.
49. Andreyeva, E. N., Belyaeva, E. S., Semeshin, V. F., Pokholkova, G. V., and Zhimulev, I. F. (2005) J. Cell. Sci., 118, 5465-5477.
50. Hsu, H. L., Gilley, D., Galande, S. A., Hande, M. P., Allen, B., Kim, S. H., Li, G. C., Campisi, J., Kohwi-Shigematsu, T., and Chen, D. J. (2000) Genes Dev., 14, 2807-2812.
51. Song, K., Jung, D., Jung, Y., Lee, S. G., and Lee, I. (2000) FEBS Lett., 481, 81-85.
52. Cooper, J. P. (2000) Curr. Opin. Genet. Dev., 10, 169-177.
53. Mefford, H. C., and Trask, B. J. (2002) Nat. Rev. Genet., 3, 91-102.
54. Biessmann, H., Prasad, S., Semeshin, V. F., Andreyeva, E. N., Nguyen, Q., Walter, M. F., and Mason, J. M. (2005) Genetics, 171, 1767-1777.
55. Karpen, G. H., and Spradling, A. C. (1992) Genetics, 132, 737-753.
56. Mason, J. M., and Biessmann, H. (1995) Trends Genet., 11, 58-62.
57. Walter, M. F., Jang, C., Kasravi, B., Donath, J., Mechler, B. M., Mason, J. M., and Biessmann, H. (1995) Chromosoma, 104, 229-241.
58. Boivin, A., Gally, C., Netter, S., Anxolabehere, D., and Ronsseray, S. (2003) Genetics, 164, 195-208.
59. Grimaud, C., Negre, N., and Cavalli, G. (2006) Chromosome Res., 14, 363-375.
60. Rabl, C. (1885) Morphol. Jahrb., 10, 214-330.
61. Scherthan, H., Weich, S., Schwegler, H., Heyting, C., Harle, M., and Cremer, T. (1996) J. Cell Biol., 134, 1109-1125.
62. Hediger, F., Neumann, F. R., van Houwe, G., Dubrana, K., and Gasser, S. M. (2002) Curr. Biol., 12, 2076-2089.
63. Grewal, S. I., and Elgin, S. C. (2002) Curr. Opin. Genet. Dev., 12, 178-187.
64. Schotta, G., Ebert, A., Krauss, V., Fischer, A., Hoffmann, J., Rea, S., Jenuwein, T., Dorn, R., and Reuter, G. (2002) EMBO J., 21, 1121-1131.
65. Czermin, B., Melfi, R., McCabe, D., Seitz, V., Imhof, A., and Pirrotta, V. (2002) Cell, 111, 185-196.
66. Eissenberg, J. C., and Elgin, S. C. (2000) Curr. Opin. Genet. Dev., 10, 204-210.
67. Ringrose, L., and Paro, R. (2004) Annu. Rev. Genet., 38, 413-443.
68. Garcia-Cao, M., O'Sullivan, R., Peters, A. H., Jenuwein, T., and Blasco, M. A. (2004) Nat. Genet., 36, 94-99.
69. Wallrath, L. L., and Elgin, S. C. (1995) Genes Dev., 9, 1263-1277.
70. Danilevskaya, O. N., Arkhipova, I. R., Traverse, K. L., and Pardue, M. L. (1997) Cell, 88, 647-655.
71. George, J. A., and Pardue, M. L. (2003) Genetics, 163, 625-635.
72. Torok, T., Benitez, C., Takacs, S., and Biessmann, H. (2007) Chromosoma, in press.
73. Danilevskaya, O. N., Traverse, K. L., Hogan, N. C., DeBaryshe, P. G., and Pardue, M. L. (1999) Mol. Cell. Biol., 19, 873-881.
74. Maxwell, P. H., Belote, J. M., and Levis, R. W. (2006) Nucleic Acids Res., 34, 5498-5507.
75. Day, A., Schirmer-Rahire, M., Kuchka, M. R., Mayfield, S. P., and Rochaix, J. D. (1988) EMBO J., 7, 1917-1927.
76. Schumann, G., Zundorf, I., Hofmann, J., Marschalek, R., and Dingermann, T. (1994) Mol. Cell Biol., 14, 3074-3084.
77. Bi, X., Srikanta, D., Fanti, L., Pimpinelli, S., Badugu, R., Kellum, R., and Rong, Y. S. (2005) Proc. Natl. Acad. Sci. USA, 102, 15167-15172.
78. Savitsky, M., Kwon, D., Georgiev, P., Kalmykova, A., and Gvozdev, V. (2006) Genes Dev., 20, 345-354.
79. Kotelnikov, R. N., Shpiz, S. G., Kalmykova, A. I., and Gvozdev, V. A. (2006) Mol. Biol. (Moscow), 40, 595-608.
80. Carrington, J. C., and Ambros, V. (2003) Science, 301, 336-338.
81. Vagin, V. V., Sigova, A., Li, C., Seitz, H., Gvozdev, V., and Zamore, P. D. (2006) Science, 313, 320-324.
82. Vagin, V. V., Klenov, M. S., Kalmykova, A. I., Stolyarenko, A. D., Kotelnikov, R. N., and Gvozdev, V. A. (2004) RNA Biol., 1, 54-58.
83. Aravin, A. A., Naumova, N. M., Tulin, A. V., Vagin, V. V., Rozovsky, Y. M., and Gvozdev, V. A. (2001) Curr. Biol., 11, 1017-1027.
84. Stapleton, W., Das, S., and McKee, B. D. (2001) Chromosoma, 110, 228-240.
85. Kalmykova, A. I., Klenov, M. S., and Gvozdev, V. A. (2005) Nucleic Acids Res., 33, 2052-2059.
86. Klenov, M. S., and Gvozdev, V. A. (2005) Biochemistry (Moscow), 70, 1187-1198.
87. Herr, A. J., Jensen, M. B., Dalmay, T., and Baulcombe, D. C. (2005) Science, 308, 118-120.
88. Onodera, Y., Haag, J. R., Ream, T., Nunes, P. C., Pontes, O., and Pikaard, C. S. (2005) Cell, 120, 613-622.
89. Hamilton, A., Voinnet, O., Chappell, L., and Baulcombe, D. (2002) EMBO J., 21, 4671-4679.
90. Zilberman, D., Cao, X., Johansen, L. K., Xie, Z., Carrington, J. C., and Jacobsen, S. E. (2004) Curr. Biol., 14, 1214-1220.
91. Hall, I. M., Shankaranarayana, G. D., Noma, K., Ayoub, N., Cohen, A., and Grewal, S. I. (2002) Science, 297, 2232-2237.
92. Volpe, T. A., Kidner, C., Hall, I. M., Teng, G., Grewal, S. I., and Martienssen, R. A. (2002) Science, 297, 1833-1837.
93. Hall, I. M., Noma, K., and Grewal, S. I. (2003) Proc. Natl. Acad. Sci. USA, 100, 193-198.
94. Harper, L., Golubovskaya, I., and Cande, W Z. (2004) J. Cell. Sci., 117, 4025-4032.
95. Scherthan, H. (2006) Telomeres, 2nd Edn. (de Lange, T., Lundblad, V., Blackburn, E., eds.) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 225-260.
96. Schmidt, A., Palumbo, G., Bozzetti, M. P., Tritto, P., Pimpinelli, S., and Schafer, U. (1999) Genetics, 151, 749-760.
97. Sugiyama, T., Cam, H., Verdel, A., Moazed, D., and Grewal, S. I. (2005) Proc. Natl. Acad. Sci. USA, 102, 152-157.
98. Kanoh, J., Sadaie, M., Urano, T., and Ishikawa, F. (2005) Curr. Biol., 15, 1808-1819.
99. Noma, K., Sugiyama, T., Cam, H., Verdel, A., Zofall, M., Jia, S., Moazed, D., and Grewal, S. I. (2004) Nat. Genet., 36, 1174-1180.
100. Mochizuki, K., and Gorovsky, M. A. (2005) Genes Dev., 19, 77-89.
101. McKee, B. D. (2004) Biochim. Biophys. Acta, 1677, 165-180.