메뉴 건너뛰기




Volumn 39, Issue 2, 2007, Pages 151-155

A-to-I RNA editing: A new regulatory mechanism of global gene expression

Author keywords

A to I Editing; gene expression; human genome

Indexed keywords

DOUBLE STRANDED RNA; GENE PRODUCT; INTERFERON; MICRORNA; RNA; TRANSCRIPTOME;

EID: 34547188624     PISSN: 10799796     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bcmd.2007.04.003     Document Type: Article
Times cited : (21)

References (51)
  • 1
    • 3543004084 scopus 로고    scopus 로고
    • Systematic identification of abundant A-to-I editing sites in the human transcriptome
    • Levanon E.Y., et al. Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat. Biotechnol. 22 (2004) 1001-1005
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1001-1005
    • Levanon, E.Y.1
  • 2
    • 4644324088 scopus 로고    scopus 로고
    • Widespread RNA editing of embedded alu elements in the human transcriptome
    • Kim D.D., et al. Widespread RNA editing of embedded alu elements in the human transcriptome. Genome Res. 14 (2004) 1719-1725
    • (2004) Genome Res. , vol.14 , pp. 1719-1725
    • Kim, D.D.1
  • 3
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
    • Athanasiadis A., Rich A., and Maas S. Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol. 2 (2004) e391
    • (2004) PLoS Biol. , vol.2
    • Athanasiadis, A.1    Rich, A.2    Maas, S.3
  • 4
    • 0026320763 scopus 로고
    • The mechanism of adenosine to inosine conversion by the double-stranded RNA unwinding/modifying activity: a high-performance liquid chromatography-mass spectrometry analysis
    • Polson A.G., Crain P.F., Pomerantz S.C., McCloskey J.A., and Bass B.L. The mechanism of adenosine to inosine conversion by the double-stranded RNA unwinding/modifying activity: a high-performance liquid chromatography-mass spectrometry analysis. Biochemistry 30 (1991) 11507-11514
    • (1991) Biochemistry , vol.30 , pp. 11507-11514
    • Polson, A.G.1    Crain, P.F.2    Pomerantz, S.C.3    McCloskey, J.A.4    Bass, B.L.5
  • 5
    • 0032481315 scopus 로고    scopus 로고
    • Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA
    • Paul M.S., and Bass B.L. Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J. 17 (1998) 1120-1127
    • (1998) EMBO J. , vol.17 , pp. 1120-1127
    • Paul, M.S.1    Bass, B.L.2
  • 6
    • 0037062438 scopus 로고    scopus 로고
    • RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA
    • Morse D.P., Aruscavage P.J., and Bass B.L. RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 7906-7911
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 7906-7911
    • Morse, D.P.1    Aruscavage, P.J.2    Bass, B.L.3
  • 7
    • 0036089476 scopus 로고    scopus 로고
    • HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project
    • Kikuno R., Nagase T., Waki M., and Ohara O. HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project. Nucleic Acids Res. 30 (2002) 166-168
    • (2002) Nucleic Acids Res. , vol.30 , pp. 166-168
    • Kikuno, R.1    Nagase, T.2    Waki, M.3    Ohara, O.4
  • 9
    • 0032077722 scopus 로고    scopus 로고
    • RNA editing of brain glutamate receptor channels: mechanism and physiology
    • Seeburg P.H., Higuchi M., and Sprengel R. RNA editing of brain glutamate receptor channels: mechanism and physiology. Brain Res. Brain Res. Rev. 26 (1998) 217-229
    • (1998) Brain Res. Brain Res. Rev. , vol.26 , pp. 217-229
    • Seeburg, P.H.1    Higuchi, M.2    Sprengel, R.3
  • 10
    • 0037171846 scopus 로고    scopus 로고
    • Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims
    • Gurevich I., et al. Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims. Neuron 34 (2002) 349-356
    • (2002) Neuron , vol.34 , pp. 349-356
    • Gurevich, I.1
  • 11
    • 0042528670 scopus 로고    scopus 로고
    • Nervous system targets of RNA editing identified by comparative genomics
    • Hoopengardner B., Bhalla T., Staber C., and Reenan R. Nervous system targets of RNA editing identified by comparative genomics. Science 301 (2003) 832-836
    • (2003) Science , vol.301 , pp. 832-836
    • Hoopengardner, B.1    Bhalla, T.2    Staber, C.3    Reenan, R.4
  • 12
    • 0033529064 scopus 로고    scopus 로고
    • Regulation of alternative splicing by RNA editing
    • Rueter S.M., Dawson T.R., and Emeson R.B. Regulation of alternative splicing by RNA editing. Nature 399 (1999) 75-80
    • (1999) Nature , vol.399 , pp. 75-80
    • Rueter, S.M.1    Dawson, T.R.2    Emeson, R.B.3
  • 13
    • 0034612640 scopus 로고    scopus 로고
    • Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2
    • Higuchi M., et al. Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2. Nature 406 (2000) 78-81
    • (2000) Nature , vol.406 , pp. 78-81
    • Higuchi, M.1
  • 14
    • 1042278125 scopus 로고    scopus 로고
    • Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1
    • Hartner J.C., et al. Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1. J. Biol. Chem. 279 (2004) 4894-4902
    • (2004) J. Biol. Chem. , vol.279 , pp. 4894-4902
    • Hartner, J.C.1
  • 15
    • 0034535312 scopus 로고    scopus 로고
    • Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis
    • Wang Q., Khillan J., Gadue P., and Nishikura K. Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Science 290 (2000) 1765-1768
    • (2000) Science , vol.290 , pp. 1765-1768
    • Wang, Q.1    Khillan, J.2    Gadue, P.3    Nishikura, K.4
  • 16
    • 14844348294 scopus 로고    scopus 로고
    • Evolutionarily conserved human targets of adenosine to inosine RNA editing
    • Levanon E.Y., et al. Evolutionarily conserved human targets of adenosine to inosine RNA editing. Nucleic Acids Res. 33 (2005) 1162-1168
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1162-1168
    • Levanon, E.Y.1
  • 17
    • 12344290084 scopus 로고    scopus 로고
    • Is abundant A-to-I RNA editing primate-specific?
    • Eisenberg E., et al. Is abundant A-to-I RNA editing primate-specific?. Trends Genet. 21 (2005) 77-81
    • (2005) Trends Genet. , vol.21 , pp. 77-81
    • Eisenberg, E.1
  • 18
    • 0036200070 scopus 로고    scopus 로고
    • An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22
    • Jarmuz A., et al. An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22. Genomics 79 (2002) 285-296
    • (2002) Genomics , vol.79 , pp. 285-296
    • Jarmuz, A.1
  • 19
    • 0345270035 scopus 로고    scopus 로고
    • Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business
    • Wedekind J.E., Dance G.S., Sowden M.P., and Smith H.C. Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business. Trends Genet. 19 (2003) 207-216
    • (2003) Trends Genet. , vol.19 , pp. 207-216
    • Wedekind, J.E.1    Dance, G.S.2    Sowden, M.P.3    Smith, H.C.4
  • 20
    • 0029670088 scopus 로고    scopus 로고
    • The neurofibromatosis type I messenger RNA undergoes base-modification RNA editing
    • Skuse G.R., Cappione A.J., Sowden M., Metheny L.J., and Smith H.C. The neurofibromatosis type I messenger RNA undergoes base-modification RNA editing. Nucleic Acids Res. 24 (1996) 478-485
    • (1996) Nucleic Acids Res. , vol.24 , pp. 478-485
    • Skuse, G.R.1    Cappione, A.J.2    Sowden, M.3    Metheny, L.J.4    Smith, H.C.5
  • 21
    • 0037043699 scopus 로고    scopus 로고
    • Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
    • Sheehy A.M., Gaddis N.C., Choi J.D., and Malim M.H. Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 418 (2002) 646-650
    • (2002) Nature , vol.418 , pp. 646-650
    • Sheehy, A.M.1    Gaddis, N.C.2    Choi, J.D.3    Malim, M.H.4
  • 22
    • 1642308939 scopus 로고    scopus 로고
    • Inhibition of hepatitis B virus replication by APOBEC3G
    • Turelli P., Mangeat B., Jost S., Vianin S., and Trono D. Inhibition of hepatitis B virus replication by APOBEC3G. Science 303 (2004) 1829
    • (2004) Science , vol.303 , pp. 1829
    • Turelli, P.1    Mangeat, B.2    Jost, S.3    Vianin, S.4    Trono, D.5
  • 23
    • 13444282074 scopus 로고    scopus 로고
    • APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses
    • Esnault C., et al. APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses. Nature 433 (2005) 430-433
    • (2005) Nature , vol.433 , pp. 430-433
    • Esnault, C.1
  • 24
    • 11144349086 scopus 로고    scopus 로고
    • Antibody diversity: one enzyme to rule them all
    • Nussenzweig M.C., and Alt F.W. Antibody diversity: one enzyme to rule them all. Nat. Med. 10 (2004) 1304-1305
    • (2004) Nat. Med. , vol.10 , pp. 1304-1305
    • Nussenzweig, M.C.1    Alt, F.W.2
  • 25
    • 0034078399 scopus 로고    scopus 로고
    • A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains
    • Chen C.X., et al. A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. RNA 6 (2000) 755-767
    • (2000) RNA , vol.6 , pp. 755-767
    • Chen, C.X.1
  • 26
    • 0025995296 scopus 로고
    • RNA editing in brain controls a determinant of ion flow in glutamate-gated channels
    • Sommer B., Kohler M., Sprengel R., and Seeburg P.H. RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell 67 (1991) 11-19
    • (1991) Cell , vol.67 , pp. 11-19
    • Sommer, B.1    Kohler, M.2    Sprengel, R.3    Seeburg, P.H.4
  • 27
    • 0027772363 scopus 로고
    • RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency
    • Higuchi M., et al. RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell 75 (1993) 1361-1370
    • (1993) Cell , vol.75 , pp. 1361-1370
    • Higuchi, M.1
  • 28
    • 0030916712 scopus 로고    scopus 로고
    • Regulation of serotonin-2C receptor G-protein coupling by RNA editing
    • Burns C.M., et al. Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature 387 (1997) 303-308
    • (1997) Nature , vol.387 , pp. 303-308
    • Burns, C.M.1
  • 29
    • 4744347763 scopus 로고    scopus 로고
    • Control of human potassium channel inactivation by editing of a small mRNA hairpin
    • Bhalla T., Rosenthal J.J., Holmgren M., and Reenan R. Control of human potassium channel inactivation by editing of a small mRNA hairpin. Nat. Struct. Mol. Biol. 11 (2004) 950-956
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 950-956
    • Bhalla, T.1    Rosenthal, J.J.2    Holmgren, M.3    Reenan, R.4
  • 30
    • 0242573188 scopus 로고    scopus 로고
    • AMPA receptor tetramerization is mediated by Q/R editing
    • Greger I.H., Khatri L., Kong X., and Ziff E.B. AMPA receptor tetramerization is mediated by Q/R editing. Neuron 40 (2003) 763-774
    • (2003) Neuron , vol.40 , pp. 763-774
    • Greger, I.H.1    Khatri, L.2    Kong, X.3    Ziff, E.B.4
  • 31
    • 0037198702 scopus 로고    scopus 로고
    • RNA editing at arg607 controls AMPA receptor exit from the endoplasmic reticulum
    • Greger I.H., Khatri L., and Ziff E.B. RNA editing at arg607 controls AMPA receptor exit from the endoplasmic reticulum. Neuron 34 (2002) 759-772
    • (2002) Neuron , vol.34 , pp. 759-772
    • Greger, I.H.1    Khatri, L.2    Ziff, E.B.3
  • 32
    • 0029610443 scopus 로고
    • Early-onset epilepsy and postnatal lethality associated with an editing-deficient GluR-B allele in mice
    • Brusa R., et al. Early-onset epilepsy and postnatal lethality associated with an editing-deficient GluR-B allele in mice. Science 270 (1995) 1677-1680
    • (1995) Science , vol.270 , pp. 1677-1680
    • Brusa, R.1
  • 33
    • 0035902466 scopus 로고    scopus 로고
    • A highly conserved protein family interacting with the fragile X mental retardation protein (FMRP) and displaying selective interactions with FMRP-related proteins FXR1P and FXR2P
    • Schenck A., Bardoni B., Moro A., Bagni C., and Mandel J.L. A highly conserved protein family interacting with the fragile X mental retardation protein (FMRP) and displaying selective interactions with FMRP-related proteins FXR1P and FXR2P. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 8844-8849
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 8844-8849
    • Schenck, A.1    Bardoni, B.2    Moro, A.3    Bagni, C.4    Mandel, J.L.5
  • 34
  • 35
    • 0032422555 scopus 로고    scopus 로고
    • Mutations in filamin 1 prevent migration of cerebral cortical neurons in human periventricular heterotopia
    • Fox J.W., et al. Mutations in filamin 1 prevent migration of cerebral cortical neurons in human periventricular heterotopia. Neuron 21 (1998) 1315-1325
    • (1998) Neuron , vol.21 , pp. 1315-1325
    • Fox, J.W.1
  • 36
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander E.S., et al. Initial sequencing and analysis of the human genome. Nature 409 (2001) 860-921
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 38
    • 0038701605 scopus 로고    scopus 로고
    • The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
    • Lev-Maor G., Sorek R., Shomron N., and Ast G. The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300 (2003) 1288-1291
    • (2003) Science , vol.300 , pp. 1288-1291
    • Lev-Maor, G.1    Sorek, R.2    Shomron, N.3    Ast, G.4
  • 39
    • 0029164692 scopus 로고
    • Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase
    • Patterson J.B., and Samuel C.E. Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase. Mol. Cell. Biol. 15 (1995) 5376-5388
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 5376-5388
    • Patterson, J.B.1    Samuel, C.E.2
  • 40
    • 0029940185 scopus 로고    scopus 로고
    • RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase
    • Polson A.G., Bass B.L., and Casey J.L. RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature 380 (1996) 454-456
    • (1996) Nature , vol.380 , pp. 454-456
    • Polson, A.G.1    Bass, B.L.2    Casey, J.L.3
  • 41
    • 0030893062 scopus 로고    scopus 로고
    • A ribonuclease specific for inosine-containing RNA: a potential role in antiviral defence?
    • Scadden A.D., and Smith C.W. A ribonuclease specific for inosine-containing RNA: a potential role in antiviral defence?. EMBO J. 16 (1997) 2140-2149
    • (1997) EMBO J. , vol.16 , pp. 2140-2149
    • Scadden, A.D.1    Smith, C.W.2
  • 42
    • 33947271964 scopus 로고    scopus 로고
    • miRNA editing-we should have inosine this coming
    • Habig J.W., Dale T., and Bass B.L. miRNA editing-we should have inosine this coming. Mol. Cell 25 (2007) 792-793
    • (2007) Mol. Cell , vol.25 , pp. 792-793
    • Habig, J.W.1    Dale, T.2    Bass, B.L.3
  • 43
    • 33845315229 scopus 로고    scopus 로고
    • Editor meets silencer: crosstalk between RNA editing and RNA interference
    • Nishikura K. Editor meets silencer: crosstalk between RNA editing and RNA interference. Nat. Rev., Mol. Cell Biol. 7 (2006) 919-931
    • (2006) Nat. Rev., Mol. Cell Biol. , vol.7 , pp. 919-931
    • Nishikura, K.1
  • 44
    • 0344305774 scopus 로고    scopus 로고
    • Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants
    • Tonkin L.A., and Bass B.L. Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants. Science 302 (2003) 1725
    • (2003) Science , vol.302 , pp. 1725
    • Tonkin, L.A.1    Bass, B.L.2
  • 45
    • 0034974268 scopus 로고    scopus 로고
    • Substrate recognition by ADAR1 and ADAR2
    • Wong S.K., Sato S., and Lazinski D.W. Substrate recognition by ADAR1 and ADAR2. RNA 7 (2001) 846-858
    • (2001) RNA , vol.7 , pp. 846-858
    • Wong, S.K.1    Sato, S.2    Lazinski, D.W.3
  • 47
    • 20844463414 scopus 로고    scopus 로고
    • Identification of microRNAs of the herpesvirus family
    • Pfeffer S., et al. Identification of microRNAs of the herpesvirus family. Nat. Methods 2 (2005) 269-276
    • (2005) Nat. Methods , vol.2 , pp. 269-276
    • Pfeffer, S.1
  • 48
    • 30044443191 scopus 로고    scopus 로고
    • Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
    • Yang W., et al. Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nat. Struct. Mol. Biol. 13 (2006) 13-21
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 13-21
    • Yang, W.1
  • 49
    • 22144444302 scopus 로고    scopus 로고
    • The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage
    • Scadden A.D. The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage. Nat. Struct. Mol. Biol. 12 (2005) 489-496
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 489-496
    • Scadden, A.D.1
  • 50
    • 33745053086 scopus 로고    scopus 로고
    • RNA editing of human microRNAs
    • Blow M.J., et al. RNA editing of human microRNAs. Genome Biol. 7 (2006) R27
    • (2006) Genome Biol. , vol.7
    • Blow, M.J.1
  • 51
    • 33847317017 scopus 로고    scopus 로고
    • Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
    • Kawahara Y., et al. Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 315 (2007) 1137-1140
    • (2007) Science , vol.315 , pp. 1137-1140
    • Kawahara, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.