Analytical applications of Fourier transform-infrared (FT-IR) spectroscopy in microbiology and prion research

Veterinary Microbiology

Volumn 123, Issue 4, 2007, Pages 305-319

  Beekes, Michael ^a   Lasch, Peter ^a   Naumann, Dieter ^a  

^a ROBERT KOCH INSTITUTE   (Germany)

Author keywords

Fourier transform infrared (FT IR) spectroscopy; Microorganisms; Prion; Prion diseases; Prion protein; Transmissible spongiform encephalopathies

Indexed keywords

PRION PROTEIN;

ALPHA HELIX; ANALYTIC METHOD; ARTICLE; BACTERIUM IDENTIFICATION; BETA SHEET; CANDIDA; DIAGNOSTIC VALUE; FOURIER TRANSFORMATION; FUNGUS IDENTIFICATION; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; INFRARED SPECTROSCOPY; NONHUMAN; PRION DISEASE;

ANIMALS; CATTLE; ENCEPHALOPATHY, BOVINE SPONGIFORM; PRION DISEASES; PRIONS; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SPECIES SPECIFICITY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 34547121477     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2007.04.010     Document Type: Article

References (60)

1. Baldwin M.A., Pan K.M., Nguyen J., Huang Z., Groth D., Serban A., Gasset M., Mehlhorn I., Fletterick R.J., and Cohen F.E. Spectroscopic characterization of conformational differences between PrPC and PrPSc: an alpha-helix to beta-sheet transition. Phil. Trans. Roy. Soc. Lond. B: Biol. Sci. 343 (1994) 435-441
2. Beekes M., McBride P.A., and Baldauf E. Cerebral targeting indicates vagal spread of infection in hamsters fed with scrapie. J. Gen. Virol. 79 (1998) 601-607
3. Brown P. Blood infectivity, processing and screening tests in transmissible spongiform encephalopathy. Vox Sang. 89 (2005) 63-70
4. Carmona P., Monzon M., Monleon E., Badiola J.J., and Monreal J. In vivo detection of scrapie cases from blood by infrared spectroscopy. J. Gen. Virol. 86 (2005) 3425-3431
5. Castilla J., Saa P., and Soto C. Detection of prions in blood. Nat. Med. 11 (2005) 982-985
6. Caughey B.W., Dong A., Bhat K.S., Ernst D., Hayes S.F., and Caughey W.S. Secondary structure analysis of the scrapie-associated protein PrP 27-30 in water by infrared spectroscopy. Biochemistry 30 (1991) 7672-7680
7. Caughey B., Raymond G.J., and Bessen R.A. Strain-dependent differences in beta-sheet conformations of abnormal prion protein. J. Biol. Chem. 273 (1998) 32230-32235
8. Choo L.P., Wetzel D.L., Halliday W.C., Jackson M., Levine S.M., and Mantsch H.H. In situ characterization of beta-amyloid in Alzheimer's diseased tissue by synchrotron Fourier transform infrared microspectroscopy. Biophys. J. 71 (1996) 1672-1679
9. Fabian H., and Mäntele W. Infrared spectroscopy of proteins. In: Chalmers J.M., and Griffiths P.R. (Eds). Handbook of Vibrational Spectroscopy (2002), John Wiley & Sons, Chichester, UK 3399-3425
10. Fischer G., Braun S., Thissen R., and Dott W. FT-IR spectroscopy as a tool for rapid identification and intra-species characterization of airborne filamentous fungi. J. Microbiol. Meth. 64 (2006) 63-77
11. Gasset M., Baldwin M.A., Fletterick R.J., and Prusiner S.B. Perturbation of the secondary structure of the scrapie prion protein under conditions that alter infectivity. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 1-5
12. Helm D., Labischinski H., and Naumann D. Elaboration of a procedure for identification of bacteria using Fourier-transform infrared spectral libraries: a stepwise correlation approach. J. Microbiol. Meth. 14 (1991) 127-147
13. Helm D., Labischinski H., Schallehn G., and Naumann D. Classification and identification of bacteria by Fourier-transform infrared spectroscopy. J. Gen. Microbiol. 137 (1991) 69-79
14. Jobling M.F., Huang X., Stewart L.R., Barnham K.J., Curtain C., Volitakis I., Perugini M., White A.R., Cherny R.A., Masters C.L., Barrow C.J., Collins S.J., Bush A.I., and Cappai R. Copper and zinc binding modulates the aggregation and neurotoxic properties of the prion peptide PrP106-126. Biochemistry 40 (2001) 8073-8084
15. Kim N.H., Park S.J., Jin J.K., Kwon M.S., Choi E.K., Carp R.I., and Kim Y.S. Increased ferric iron content and iron-induced oxidative stress in the brains of scrapie-infected mice. Brain Res. 884 (2000) 98-103
16. Kirschner C., Maquelin K., Pina P., Ngo Thi N.A., Choo-Smith L.-P., Sockalingum G.D., Sandt C., Ami D., Orsini F., Doglia S.M., Allouch P., Mainfait M., Puppels G.J., and Naumann D. Classification and identification of Enterococci: a comparative phenotypic, genotypic and vibrational spectroscopic study. J. Clin. Microbiol. 39 (2001) 1763-1770
17. Kneipp J., Lasch P., Baldauf E., Beekes M., and Naumann D. Detection of pathological molecular alterations in scrapie-infected hamster brain by Fourier transform infrared (FT-IR) spectroscopy. Biochim. Biophys. Acta 1501 (2000) 189-199
18. Kneipp J., Beekes M., Lasch P., and Naumann D. Molecular changes of preclinical scrapie can be detected by infrared spectroscopy. J. Neurosci. 22 (2002) 2989-2997
19. Kneipp J., Miller L.M., Joncic M., Kittel M., Lasch P., Beekes M., and Naumann D. In situ identification of protein structural changes in prion-infected tissue. Biochim. Biophys. Acta 1639 (2003) 152-158
20. Kretlow A., Wang Q., Kneipp J., Lasch P., Beekes M., Miller L., and Naumann D. FTIR-microspectroscopy of prion-infected nervous tissue. Biochim. Biophys. Acta 1758 (2006) 948-959
21. Krimm S., and Bandekar J. Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins. Adv. Protein Chem. 38 (1986) 181-364
22. Kühbacher M., Weseloh G., Thomzig A., Bertelsmann H., Falkenberg G., Radtke M., Riesemeier H., Kyriakopoulos A., Beekes M., and Behne D. Analysis and localization of metal- and metalloid-containing proteins by synchrotron radiation X-ray fluorescence spectrometry. X-ray Spectrom. 34 (2005) 112-117
23. Kümmerle M., Scherer S., and Seiler S. Rapid and reliable identification of food-borne yeasts by Fourier-transform infrared spectroscopy. Appl. Environ. Microbiol. 64 (1998) 2207-2214
24. Lasch P., Schmitt J., Beekes M., Eiden M., Moecks J., Petrich W., Fabian H., and Naumann D. Identification of bovine spongiform encephalopathy (BSE) in bovine serum using infrared spectroscopy and multivariate classification analysis. Anal. Chem. 75 (2003) 6673-6678
25. Lasch, P., Beekes, M., Schmitt, J., Naumann, D., 2006. Detection of preclinical scrapie from serum by infrared spectroscopy and chemometrics. Anal. Bioanal. Chem. (Epub ahead of print).
26. Llewelyn C.A., Hewitt P.E., Knight R.S., Amar K., Cousens S., Mackenzie J., and Will R.G. Possible transmission of variant Creutzfeldt-Jakob disease by blood transfusion. Lancet 363 (2004) 417-421
27. Mantsch H. Historical survey of infrared and Raman spectroscopy of biological materials. In: Gremlich H. (Ed). Infrared and Raman Spectroscopy of Biological Materials (2001), Marcel Dekker, New York, USA 1-14
28. Maquelin K., Kirschner C., Choo-Smith L.-P., Ngo-Thi N.A., van Vreeswijk T., Stämmler M., Endtz H.P., Bruining H.A., Naumann D., and Puppels G.J. Prospective study of the performance of vibrational spectroscopies for rapid identification of bacterial and fungal pathogens recovered from blood cultures. J. Clin. Microbiol. 41 (2003) 324-329
29. Martin T.C., Moecks J., Belooussov A., Cawthraw S., Dolenko B., Eiden M., Von F.J., Kohler W., Schmitt J., Somorjai R., Udelhoven T., Verzakov S., and Petrich W. Classification of signatures of bovine spongiform encephalopathy in serum using infrared spectroscopy. Analyst 129 (2004) 897-901
30. McBride P.A., Schulz-Schaeffer W.J., Donaldson M., Bruce M., Diringer H., Kretzschmar H.A., and Beekes M. Early spread of scrapie from the gastrointestinal tract to the central nervous system involves autonomic fibers of the splanchnic and vagus nerves. J. Virol. 75 (2001) 9320-9327
31. Miura T., Hori-i A., and Takeuchi H. Metal-dependent alpha-helix formation promoted by the glycine-rich octapeptide region of prion protein. FEBS Lett. 396 (1996) 248-252
32. Naumann D. Infrared spectroscopy in microbiology. In: Meyers R.A. (Ed). Encyclopedia of Analytical Chemistry (2000), John Wiley & Sons, Chichester, UK 102-131
33. Naumann D. FT-Infrared and FT-Raman spectroscopy in biomedical research. In: Gremlich H.U. (Ed). Infrared and Raman Spectroscopy of Biological Materials (2001), Marcel Dekker, New York, USA 323-377
34. Naumann D., Helm D., and Labischinski H. Microbiological characterizations by FT-IR spectroscopy. Nature 351 (1991) 81
35. Ngo Thi N.A., Kirschner C., and Naumann D. Characterization and identification of microorganisms by FT-IR microspectrometry. J. Mol. Struct. 661-662 (2003) 371-380
36. Oberreuter H., Seiler H., and Scherer S. Identification of coryneform bacteria and related taxa by Fourier-transform infrared (FT-IR) spectroscopy. Int. J. Syst. Evol. Microbiol. 52 (2002) 91-100
37. Pan K.M., Baldwin M., Nguyen J., Gasset M., Serban A., Groth D., Mehlhorn I., Huang Z., Fletterick R.J., and Cohen F.E. Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 10962-10966
38. Peden A.H., Head M.W., Ritchie D.L., Bell J.E., and Ironside J.W. Preclinical vCJD after blood transfusion in a PRNP codon 129 heterozygous patient. Lancet 364 (2004) 527-529
39. Prusiner S.B. Novel proteinaceous infectious particles cause scrapie. Science 216 (1982) 136-144
40. Prusiner S.B. Prions. Proc. Natl. Acad. Sci. U.S.A. 95 (1998) 13363-13383
41. Purdey M. The UK epidemic of BSE: slow virus or chronic pesticide-initiated modification of the prion protein? Part 1. Mechanisms for a chemically induced pathogenesis/transmissibility. Med. Hypotheses 46 (1996) 429-443
42. Purdey M. The UK epidemic of BSE: slow virus or chronic pesticide-initiated modification of the prion protein? Part 2. An epidemiological perspective. Med. Hypotheses 46 (1996) 445-454
43. Purdey M. Ecosystems supporting clusters of sporadic TSEs demonstrate excesses of the radical-generating divalent cation manganese and deficiencies of antioxidant co factors Cu, Se, Fe, Zn. Does a foreign cation substitution at prion protein's Cu domain initiate TSE?. Med. Hypotheses 54 (2000) 278-306
44. Rebuffo C.A., Schmitt J., Wenning M., von Stetten F., and Scherer S. Reliable and rapid identification of Listeria monocytogenes and Listeria species by artificial neural network-based Fourier transform infrared spectroscopy. Appl. Environ. Microbiol. 72 (2006) 994-1000
45. Saa P., Castilla J., and Soto C. Presymptomatic detection of prions in blood. Science 313 (2006) 92-94
46. Safar J., Wille H., Itri V., Groth D., Serban H., Torchia M., Cohen F.E., and Prusiner S.B. Eight prion strains have PrP(Sc) molecules with different conformations. Nat. Med. 4 (1998) 1157-1165
47. Sandt C., Sockalingum G.D., Aubert D., Lepan H., Lepouse C., Jaussaud M., Leon A., Pinon J.M., Manfait M., and Toubas D. Use of Fourier-transform infrared spectroscopy for typing of Candida albicans strains isolated in intensive care units. J. Clin. Microbiol. 41 (2003) 954-959
48. Schaeberle M.D., Levin I.W., and Lewis E.N. Biological vibrational spectroscopic imaging. In: Gremlich H.U. (Ed). Infrared and Raman Spectroscopy of Biological Materials (2001), Marcel Dekker, New York, USA 231-258
49. Schmitt J., Beekes M., Brauer A., Udelhoven T., Lasch P., and Naumann D. Identification of scrapie infection from blood serum by Fourier transform infrared spectroscopy. Anal. Chem. 74 (2002) 3865-3868
50. Spassov S., Beekes M., and Naumann D. Structural differences between TSEs strains investigated by FT-IR spectroscopy. Biochim. Biophys. Acta 1760 (2006) 1138-1149
51. Stockel J., Safar J., Wallace A.C., Cohen F.E., and Prusiner S.B. Prion protein selectively binds copper(II) ions. Biochemistry 37 (1998) 7185-7193
52. Surewicz W.K., and Mantsch H.H. New insight into protein secondary structure from resolution-enhanced infrared spectra. Biochim. Biophys. Acta 952 (1988) 115-130
53. Thomzig A., Spassov S., Friedrich M., Naumann D., and Beekes M. Discriminating scrapie and bovine spongiform encephalopathy isolates by infrared spectroscopy of pathological prion protein. J. Biol. Chem. 279 (2004) 33847-33854
54. Tintelnot K., Haase G., Seibold M., Bergmann F., Stämmler M., Franz T., and Naumann D. Evaluation of phenotypic markers for selection and identification of Candida dubliniensis. J. Clin. Microbiol. 38 (2000) 1599-1608
55. Udelhoven T., Naumann D., and Schmitt J. Development of a hierarchical classification system with artificial neural networks and FT-IR spectra for the identification of bacteria. Appl. Spectrosc. 54 (2000) 1471-1479
56. UK Health Protection Agency, 2006. New case of variant CJD associated with blood transfusion. Press Statement 9 February 2006.
57. Wang Q., Kretlow A., Beekes M., Naumann D., and Miller L. In situ characterization of prion protein structure and metal accumulation in scrapie-infected cells by synchrotron infrared and X-ray imaging. Vib. Spectrosc. 38 (2005) 61-69
58. Wenning M., Seiler H., and Scherer S. Fourier-transform infrared spectroscopy, a novel and rapid tool for identification of yeasts. Appl. Environ. Microbiol. 68 (2002) 4717-4720
59. Wetzel D.L., and Levine S.M. Biological applications of infrared microspectroscopy. In: Gremlich H.U. (Ed). Infrared and Raman Spectroscopy of Biological Materials (2001), Marcel Dekker, New York, USA 101-142
60. Zandomeneghi G., Krebs M.R.H., McCammon M.G., and Fandrich M. FTIR reveals structural differences between native-sheet proteins and amyloid fibrils. Protein Sci. 13 (2004) 3314-3321