Evaluation of phenotypic markers for selection and identification of Candida dubliniensis

Journal of Clinical Microbiology

Volumn 38, Issue 4, 2000, Pages 1599-1608

  Tintelnot, Kathrin ^a   Haase, Gerhard ^b   Seibold, Michael ^a   Bergmann, Frank ^c   Staemmler, Maren ^a   Franz, Tatjana ^a   Naumann, Dieter ^a  

^a ROBERT KOCH INSTITUTE   (Germany)

^b UNIVERSITY HOSPITAL RWTH AACHEN   (Germany)

^c HUMBOLDT UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLUCOSIDASE; RIBOSOME DNA;

ADULT; AGED; ARTICLE; CANDIDA DUBLINIENSIS; ENZYME ACTIVITY; FEMALE; FUNGUS CULTURE; FUNGUS GROWTH; FUNGUS IDENTIFICATION; GENE SEQUENCE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; INFRARED SPECTROSCOPY; MAJOR CLINICAL STUDY; MALE; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SPOROGENESIS;

CANDIDA ALBICANS; CANDIDA DUBLINIENSIS; FUNGI; HUMAN IMMUNODEFICIENCY VIRUS;

EID: 0033997035     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.38.4.1599-1608.2000     Document Type: Article

References (40)

1. Boerlin, P., F. Boerlin-Petzold, C. Durussel, M. Addo, J. L. Pagani, J. P. Chave, and J. Bille. 1995. Cluster of oral atypical Candida albicans isolates in a group of human immunodeficiency virus-positive drug users. J. Clin. Microbiol. 33:1129-1135.
2. Coleman, D. C., D. J. Sullivan, D. E. Bennett, G. P. Moran, H. J. Barry, and D. B. Shanley. 1997. Candidiasis: the emergence of a novel species, Candida Jubliniensis. AIDS 11:557-567.
3. De Rijk, P., and R. De Wachter. 1993. DCSE, an interactive tool for sequence alignment and secondary structure research. Comput. Applic. Biosci. 9:735-740.
4. Gilfillan, G. D., D. J. Sullivan, K. Haynes, T. Parkinson, D. C. Coleman, and N. A. Gow. 1998. Candida dubliniensis: phylogeny and putative virulence factors. Microbiology 144:829-838.
5. Goodacre, R., P. J. Rooney, and D. B. Kell. 1998. Rapid analysis of microbial systems using vibrational spectroscopy and supervised learning methods: application to the discrimination between methicillin-resistant and methicillin-susceptible Staphylococcus aureus. In H. H. Mantsch and M. Jackson (ed.), Infrared spectroscopy: new tool in medicine. Proceedings of SPIE, vol. 3257, p. 220-229. Bellingham, Wash.
6. Goodacre, R., E. M. Timmins, P. J. Rooney, J. J. Rowland, and D. B. Kell. 1996. Rapid identification of Streptococcus and Enterocaccus species using diffuse reflectance-absorbance Fourier transform infrared spectroscopy and artificial neural networks. FEMS Microbiol. Lett. 140:233-239.
7. Goodwin, D. C., and S. B. Lee. 1993. Microwave miniprep of total genomic DNA from fungi, plants, protists and animals for PCR. BioFeedback 15: 438-444.
8. Haase, G., L. Sonntag, Y. van de Peer, J. M. J. Uijthof, A. Podbielski, and B. Melzer-Krick. 1995. Phylogenetic analysis of ten black yeast species using nuclear small suhunit rRNA gene sequences. Antonie Leeuwenhoek 68:19-33.
9. Helm, D., H. Labischinski, and D. Naumann. 1991. Elaboration of a procedure for identification of bacteria using Fourier-transform infrared spectral libraries: a stepwise correlation approach. J. Microbiol. Methods 14:127-142.
10. Helm, D., H. Labischinski, G. Schallehn, and D. Naumann. 1991. Classification and identification of bacteria by Fourier-transform infrared spectroscopy. J. Gen. Microbiol. 137:69-79.
11. Jabra-Rizk, M. A., A. A. Baqui, J. I. Kelley, W. A. Falkler, Jr., W. G. Merz, and T. F. Meiller. 1999. Identification of Candida dubliniensis in a prospective study of patients in the United States. J. Clin. Microbiol. 37:321-326.
12. Kurtzman, C. P. 1994. Molecular taxonomy of the yeasts. Yeast 10:1727-1740.
13. Kurtzman, C. P., and C. J. Robnett. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Leeuwenhoek 73:331-371.
14. Kurtzman, C. P., and C. J. Robnett. 1997. Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5′ end of the large-suhunit (26S) ribosomal DNA gene. J. Clin. Microbiol. 35:1216-1223.
15. Mannarelli, B. M., and C. P. Kurtzman. 1998. Rapid identification of Candida albicans and other human pathogenic yeasts by using short oligonucleotides in a PCR. J. Clin. Microbiol. 36:1634-1641.
16. Meis, J. F., M. Ruhnke, B. E. De Pauw, F. C. Odds, W. Siegert, and P. E. Verweij. 1999. Candida dubliniensis candidemia in patients with chemotherapy-induced neutropenia and bone marrow transplantation. Emerg. Infect. Dis. 5:1-4.
17. Moran, G. P., D. Sanglard, S. M. Donnelly, D. B. Shanley, D. J. Sullivan, and D. C. Coleman. 1998. Identification and expression of multidrug transporters responsible for fluconazole resistance in Candida dubliniensis. Antimicrob. Agents Chemother. 42:1819-1830.
18. Moran, G. P., D. J. Sullivan, M. C. Henman, C. E. McCreary, B. J. Harrington, D. B. Shanley, and D. C. Coleman. 1997. Antifungal drug susceptibilities of oral Candida dubliniensis isolates from human immunodeficiency virus (HIV)-infected and non-HIV-infected subjects and generation of stable fluconazole-resistant derivatives in vitro. Antimicrob. Agents Chemother. 41:617-623.
19. 18a.National Committee for Clinical Laboratory Standards. 1997. Reference method for broth dilution antifungal susceptibility testing of yeasts. M-27A. National Committee for Clinical Laboratory Standards, Villanova, Pa.
20. Naumann, D. 1998. Infrared and NIR Raman spectroscopy in medical microbiology. In H. H. Mantsch and M. Jackson (ed.), Infrared spectroscopy: new tool in medicine. Proceedings of SPIE, vol. 3257, p. 245-257, Bellingham, Wash.
21. Naumann, D., D. Helm, and H. Labischinski. 1991. Microbiological characterizations by FT-IR spectroscopy. Nature 351:81-82.
22. Naumann, D., H. Labischinski, and P. Giesbrecht. 1991. The characterization of microorganisms by Fourier-transform infrared spectroscopy (FT-IR), p. 43-96. In W. H. Nelson (ed.), Modern techniques for rapid microbiological analysis. VCH Publishers, New York, N.Y.
23. Odds, F. C., and R. Bernaerts. 1994. CHROMagar Candida, a new differential isolation medium for presumptive identification of clinically important Candida species. J. Clin. Microbiol. 32:1923-1929.
24. Odds, F. C., L. Van Nuffel, and G. Dams. 1998. Prevalence of Candida dubliniensis isolates in a yeast stock collection. J. Clin. Microbiol. 36:2869-2873.
25. Pinjon, E., D. Sullivan, I. Salkin, D. Shanley, and D. Coleman. 1998. Simple, inexpensive, reliable method for differentiation of Candida dubliniensis from Candida albicans. J. Clin. Microbiol. 36:2093-2095.
26. Rex, J. H., M. A. Pfaller, J. N. Galgiani, M. S. Barlett, A. Espinel-Ingroff, and M. A. Ghannoum. 1997. Development of interpretative breakpoints for antifungal susceptibility testing: conceptual framework and analysis of in vitro-in vivo correlation data for fluconazole, itraconazole and Candida infections. Clin. Infect. Dis. 24:235-247.
27. Ruhnke, M., I. Grosch-Woerner, A. Steinmüller, and A. Neubauer. 1997. Molekulare Epidemiologie von Candido-Infektionen bei HIV-infizierten Müttern und ihren Kindern. Wien. Med. Wochenschr. 147:446-449.
28. Salkin, I. F., W. R. Pruitt, A. A. Padhye, D. Sullivan, D. Coleman, and D. H. Pincus. 1998. Distinctive carbohydrate assimilation profiles used to identify the first clinical isolates of Candida dubliniensis recovered in the United States. J. Clin. Microbiol. 36:1467.
29. Schmitt, J., T. Udelhoven, D. Naumann, and H. C. Flemming. 1998. Stacked spectral data processing and artifical neural networks applied to FT-IR and FT-Raman spectra in biomedical applications. In H. H. Mantsch and M. Jackson (ed.), Infrared spectroscopy: new tool in medicine. Proceedings of SPIE, vol. 3257, p. 236-244, Bellingham, Wash.
30. Schoofs, A., F. C. Odds, R. Colebunders, M. Ieven, and H. Goossens. 1997. Use of specialised isolation media for regonition and identification of Candida dubliniensis isolates from HIV-infected patients. Eur. J. Clin. Microbiol. Infect. Dis. 16:296-300.
31. Sullivan, D., and D. Coleman. 1998. Candida dubliniensis: characteristics and identification. J. Clin. Microbiol. 36:329-334.
32. Sullivan, D., K. Haynes, J. Bille, P. Boerlin, L. Rodero, S. Lloyd, M. Henman, and D. Coleman. 1997. Widespread geographic distribution of oral Candida dubliniensis strains in human immunodeficiency virus-infected individuals. J. Clin. Microbiol. 35:960-964.
33. Sullivan, D. J., T. J. Westerneng, K. A. Haynes, D. E. Bennett, and D. C. Coleman. 1995. Candida dubliniensis sp. nov.: phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals. Microbiology 141:1507-1521.
34. Taschdjian, C. L. 1953. A simply prepared identification medium for Candida albicans. Mycologia 45:474-475.
35. Tietz, H. J., A. Kussner, M. Thanos, M. P. De Andrade, W. Presber, and G. Schonian. 1995. Phenotypic and genotypic characterization of unusual vaginal isolates of Candida albicans from Africa. J. Clin. Microbiol. 33:2462-2465.
36. Timmins, E. M., S. A. Howell, B. K. Alsberg, W. C. Noble, and R. Goodacre. 1998. Rapid differentiation of closely related Candida species and strains by pyrolysis-mass spectrometry and Fourier transform-infrared spectroscopy. J. Clin. Microbiol. 36:367-374.
37. Uijthof, J. M. J., A. van Belkum, G. S. de Hoog, and G. Haase. 1998. Exophiala dermatitidis and Sarcinomyces phaeomuriformis: ITS1-sequencing and nutritional physiology. Med. Mycol. 36:143-152.
38. van Uden, N., and H. Buckley. 1971. Genus 2. Candida Berkhout, p. 914-1087. In J. Lodder (ed.), The yeasts. Ataxonomic study, 2nd ed. North-Holland Publishing Company, Amsterdam, The Netherlands.
39. Velegraki, A., and M. Logotheti. 1998. Presumptive identification of an emerging yeast pathogen: Candida dubliniensis (sp. nov.) reduces 2,3,5-triphenyltetrazolium chloride. FEMS Immunol. Med. Microbiol. 20:239-241.
40. White, T. J., T. Bruns, S. Lee, and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for genetics, p. 129-141. In M. A. Innis, D. H. Gelfand, J. S. Sninsky, and T. J. White (ed.), PCR protocols: a guide to methods and applications. Academic Press, Inc., New York, N. Y.