SCOPUS 정보 검색 플랫폼

Proteomics

Volumn 7, Issue 13, 2007, Pages 2162-2171

A multivariate analysis approach to the integration of proteomic and gene expression data

(3) Fagan, Ailís a Culhane, Aedin C b,c Higgins, Desmond G a

a UNIVERSITY COLLEGE DUBLIN (Ireland)

b HARVARD SCHOOL OF PUBLIC HEALTH (United States)

c DANA FARBER CANCER INSTITUTE (United States)

Author keywords

Co inertia analysis; Data integration; Gene ontology; Microarray

Indexed keywords

ARTICLE; CO INERTIA ANALYSIS; GENE EXPRESSION; MULTIVARIATE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PROTEOMICS;

ALGORITHMS; ANIMALS; CELL LINE, TUMOR; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; DATABASES, PROTEIN; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENOMICS; HUMANS; LIFE CYCLE STAGES; MULTIVARIATE ANALYSIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLASMODIUM FALCIPARUM; PROTEIN ARRAY ANALYSIS; PROTEOME; PROTEOMICS;

EID: 34447555632 PISSN: 16159853 EISSN: 16159861 Source Type: Journal
DOI: 10.1002/pmic.200600898 Document Type: Article

Times cited : (62)

References (58)

1
- 0016711037
- O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
- (1975) J. Biol. Chem , vol.250 , pp. 4007-4021
- O'Farrell, P.H.¹

2
- 33646574615
- Kozarova, A., Petrinac, S., Ali, A., Hudson, J. W., J. Proteome Res. 2006, 5, 1051-1059.
- (2006) J. Proteome Res , vol.5 , pp. 1051-1059
- Kozarova, A.¹ Petrinac, S.² Ali, A.³ Hudson, J.W.⁴

3
- 0033016717
- Gygi, S. P., Rochon, Y., Franza, B. R., Aebersold, R., Mol. Cell Biol. 1999, 19, 1720-1730.
- (1999) Mol. Cell Biol , vol.19 , pp. 1720-1730
- Gygi, S.P.¹ Rochon, Y.² Franza, B.R.³ Aebersold, R.⁴

4
- 19944432197
- Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B. et al., Mol. Cell Proteomics 2004, 3, 1154-1169.
- (2004) Mol. Cell Proteomics , vol.3 , pp. 1154-1169
- Ross, P.L.¹ Huang, Y.N.² Marchese, J.N.³ Williamson, B.⁴

5
- 0035226176
- Stewart, I. I., Thomson, T., Figeys, D., Rapid Commun. Mass Spectrom. 2001, 15, 2456-2465.
- (2001) Rapid Commun. Mass Spectrom , vol.15 , pp. 2456-2465
- Stewart, I.I.¹ Thomson, T.² Figeys, D.³

6
- 0035106351
- Washburn, M. P., Wolters, D., Yates, J. R., III, Nat. Biotechnol. 2001, 19, 242-247.
- (2001) Nat. Biotechnol , vol.19 , pp. 242-247
- Washburn, M.P.¹ Wolters, D.² Yates III, J.R.³

7
- 13844299232
- Cox, B., Kislinger, T., Emili, A., Methods 2005, 35, 303-314.
- (2005) Methods , vol.35 , pp. 303-314
- Cox, B.¹ Kislinger, T.² Emili, A.³

8
- 26844564069
- Cagney, G., Park, S., Chung, C., Tong, B. et al., J. Proteome Res. 2005, 4, 1757-1767.
- (2005) J. Proteome Res , vol.4 , pp. 1757-1767
- Cagney, G.¹ Park, S.² Chung, C.³ Tong, B.⁴

9
- 0041923788
- Corbin, R. W., Paliy, O., Yang, F., Shabanowitz, J. et al., Proc. Natl. Acad Sci. U.S.A. 2003, 100, 9232-9237.
- (2003) Proc. Natl. Acad Sci. U.S.A , vol.100 , pp. 9232-9237
- Corbin, R.W.¹ Paliy, O.² Yang, F.³ Shabanowitz, J.⁴

10
- 33750143779
- Chen, Y. R., Juan, H. F., Huang, H. C., Huang, H. H. et al., J. Proteome Res. 2006, 5, 2727-2742.
- (2006) J. Proteome Res , vol.5 , pp. 2727-2742
- Chen, Y.R.¹ Juan, H.F.² Huang, H.C.³ Huang, H.H.⁴

11
- 0036545614
- Griffin, T. J., Gygi, S. P., Ideker, T., Rist, B. et al., Mol. Cell Proteomics 2002, 1, 323-333.
- (2002) Mol. Cell Proteomics , vol.1 , pp. 323-333
- Griffin, T.J.¹ Gygi, S.P.² Ideker, T.³ Rist, B.⁴

12
- 8744234024
- Le Roch, K. G., Johnson, J. R., Florens, L., Zhou, Y. et al., Genome Res. 2004, 14, 2308-2318.
- (2004) Genome Res , vol.14 , pp. 2308-2318
- Le Roch, K.G.¹ Johnson, J.R.² Florens, L.³ Zhou, Y.⁴

13
- 10744224439
- Mootha, V. K., Bunkenborg, J., Olsen, J. V., Hjerrild, M. et al., Cell 2003, 115, 629-640.
- (2003) Cell , vol.115 , pp. 629-640
- Mootha, V.K.¹ Bunkenborg, J.² Olsen, J.V.³ Hjerrild, M.⁴

14
- 0037453060
- Washburn, M. P., Koller, A., Oshiro, G., Ulaszek, R. R. et al., Proc. Natl. Acad. Sci. U.S. A. 2003, 100, 3107-3112.
- (2003) Proc. Natl. Acad. Sci. U.S. A , vol.100 , pp. 3107-3112
- Washburn, M.P.¹ Koller, A.² Oshiro, G.³ Ulaszek, R.R.⁴

15
- 33645993265
- 1151 Kislinger, T, Cox, B, Kannan, A, Chung, C. et al, Cell 2006, 125, 173-186
- 1151 Kislinger, T., Cox, B., Kannan, A., Chung, C. et al., Cell 2006, 125, 173-186.

16
- 33745608985
- Nie, L., Wu, G., Brockman, F. J., Zhang, W., Bioinformatics 2006, 22, 1641-1647.
- (2006) Bioinformatics , vol.22 , pp. 1641-1647
- Nie, L.¹ Wu, G.² Brockman, F.J.³ Zhang, W.⁴

17
- 28444475160
- Hwang, D., Rust, A. G., Ramsey, S., Smith, J. J. et al., Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 17296-17301.
- (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 17296-17301
- Hwang, D.¹ Rust, A.G.² Ramsey, S.³ Smith, J.J.⁴

18
- 28444498336
- Hwang, D., Smith, J. J., Leslie, D. M., Weston, A. D. et al., Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 17302-17307.
- (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 17302-17307
- Hwang, D.¹ Smith, J.J.² Leslie, D.M.³ Weston, A.D.⁴

19
- 84977421344
- Dolédec, S., Chessel, D., Freshw. Biol. 1994, 31, 277-294.
- (1994) Freshw. Biol , vol.31 , pp. 277-294
- Dolédec, S.¹ Chessel, D.²

20
- 0021602838
- Anderson, N. L., Hofmann, J. P., Gemmell, A., Taylor, J., Clin. Chem. 1984, 30, 2031-2036.
- (1984) Clin. Chem , vol.30 , pp. 2031-2036
- Anderson, N.L.¹ Hofmann, J.P.² Gemmell, A.³ Taylor, J.⁴

21
- 12244289603
- Culhane, A. C., Perriere, G., Considine, E. C., Cotter, T. G., Higgins, D. G., Bioinformatics 2002, 18, 1600-1608.
- (2002) Bioinformatics , vol.18 , pp. 1600-1608
- Culhane, A.C.¹ Perriere, G.² Considine, E.C.³ Cotter, T.G.⁴ Higgins, D.G.⁵

22
- 0034730140
- Alter, O., Brown, P. O., Botstein, D., Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 10101-10106.
- (2000) Proc. Natl. Acad. Sci. U.S.A , vol.97 , pp. 10101-10106
- Alter, O.¹ Brown, P.O.² Botstein, D.³

23
- 0037343132
- Johansson, D., Lindgren, P., Berglund, A., Bioinformatics 2003, 19, 467-473.
- (2003) Bioinformatics , vol.19 , pp. 467-473
- Johansson, D.¹ Lindgren, P.² Berglund, A.³

24
- 0036956225
- Nguyen, D. V., Rocke, D. M., Bioinformatics 2002, 18, 1625-1632.
- (2002) Bioinformatics , vol.18 , pp. 1625-1632
- Nguyen, D.V.¹ Rocke, D.M.²

25
- 0742269626
- Lilien, R. H., Farid, H., Donald, B. R., J. Comput. Biol. 2003, 10, 925-946.
- (2003) J. Comput. Biol , vol.10 , pp. 925-946
- Lilien, R.H.¹ Farid, H.² Donald, B.R.³

26
- 0141738784
- Wu, B., Abbott, T., Fishman, D., McMurray, W. et al., Bioinformatics 2003, 19, 1636-1643.
- (2003) Bioinformatics , vol.19 , pp. 1636-1643
- Wu, B.¹ Abbott, T.² Fishman, D.³ McMurray, W.⁴

27
- 13244258397
- Karp, N. A., Griffin, J. L., Lilley, K. S., Proteomics 2005, 5, 81-90.
- (2005) Proteomics , vol.5 , pp. 81-90
- Karp, N.A.¹ Griffin, J.L.² Lilley, K.S.³

28
- 26844461471
- Dumas, M. E., Canlet, C., Debrauwer, L., Martin, P., Paris, A., J. Proteome Res. 2005, 4, 1485-1492.
- (2005) J. Proteome Res , vol.4 , pp. 1485-1492
- Dumas, M.E.¹ Canlet, C.² Debrauwer, L.³ Martin, P.⁴ Paris, A.⁵

29
- 0036156185
- Jarraud, S., Mougel, C., Thioulouse, J., Lina, G. et al., Infect. Immun. 2002, 70, 631-641.
- (2002) Infect. Immun , vol.70 , pp. 631-641
- Jarraud, S.¹ Mougel, C.² Thioulouse, J.³ Lina, G.⁴

30
- 2942577836
- Culhane, A. C., Perriere, G., Higgins, D. G., BMC Bioinformatics 2003, 4, 59.
- (2003) BMC Bioinformatics , vol.4 , pp. 59
- Culhane, A.C.¹ Perriere, G.² Higgins, D.G.³

31
- 0029021581
- Thioulouse, J., Lobry, J. R., Comput. Appl. Biosci. 1995, 11, 321-329.
- (1995) Comput. Appl. Biosci , vol.11 , pp. 321-329
- Thioulouse, J.¹ Lobry, J.R.²

32
- 0034069495
- Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Nat. Genet. 2000, 25, 25-29.
- (2000) Nat. Genet , vol.25 , pp. 25-29
- Ashburner, M.¹ Ball, C.A.² Blake, J.A.³ Botstein, D.⁴

33
- 19544368017
- Busold, C. H., Winter, S., Hauser, N., Bauer, A. et al., Bioinformatics 2005, 21, 2424-2429.
- (2005) Bioinformatics , vol.21 , pp. 2424-2429
- Busold, C.H.¹ Winter, S.² Hauser, N.³ Bauer, A.⁴

34
- 1542399989
- Al-Shahrour, F., Diaz-Uriarte, R., Dopazo, J., Bioinformatics 2004, 20, 578-580.
- (2004) Bioinformatics , vol.20 , pp. 578-580
- Al-Shahrour, F.¹ Diaz-Uriarte, R.² Dopazo, J.³

35
- 85069263197
- Beissbarth, T., Speed, T. P., Bioinformatics 2004, 20, 1464-1465.
- (2004) Bioinformatics , vol.20 , pp. 1464-1465
- Beissbarth, T.¹ Speed, T.P.²

36
- 0038005018
- Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J. et al., Genome Biol. 2003, 4, P3.
- (2003) Genome Biol , vol.4
- Dennis Jr., G.¹ Sherman, B.T.² Hosack, D.A.³ Yang, J.⁴

37
- 0141633042
- Le Roch, K. G., Zhou, Y., Blair, P. L., Grainger, M. et al., Science 2003, 301, 1503-1508.
- (2003) Science , vol.301 , pp. 1503-1508
- Le Roch, K.G.¹ Zhou, Y.² Blair, P.L.³ Grainger, M.⁴

38
- 10744226821
- Nishizuka, S., Charboneau, L., Young, L., Major, S. et al., Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 14229-14234.
- (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 14229-14234
- Nishizuka, S.¹ Charboneau, L.² Young, L.³ Major, S.⁴

39
- 0035845531
- Staunton, J. E., Slonim, D. K., Coller, H. A., Tamayo, P. et al., Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 10787-10792.
- (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 10787-10792
- Staunton, J.E.¹ Slonim, D.K.² Coller, H.A.³ Tamayo, P.⁴

40
- 0035848705
- Paweletz, C. P., Charboneau, L., Bichsel, V. E., Simone, N. L. et al., Oncogene 2001, 20, 1981-1989.
- (2001) Oncogene , vol.20 , pp. 1981-1989
- Paweletz, C.P.¹ Charboneau, L.² Bichsel, V.E.³ Simone, N.L.⁴

41
- 0010927824
- Zhou, Y., Abagyan, R., BMC Bioinformatics 2002, 3, 3.
- (2002) BMC Bioinformatics , vol.3 , pp. 3
- Zhou, Y.¹ Abagyan, R.²

42
- 0035582244
- Wolters, D. A., Washburn, M. P., Yates, J. R., III. Anal. Chem. 2001, 73, 5683-5690.
- (2001) Anal. Chem , vol.73 , pp. 5683-5690
- Wolters, D.A.¹ Washburn, M.P.² Yates III, J.R.³

43
- 0043064042
- Sadygov, R. G., Yates, J. R., III, Anal. Chem. 2003, 75, 3792-3798.
- (2003) Anal. Chem , vol.75 , pp. 3792-3798
- Sadygov, R.G.¹ Yates III, J.R.²

44
- 33746875960
- Mair, G. R., Braks, J. A., Garver, L. S., Wiegant, J. C. et al., Science 2006, 313, 667-669.
- (2006) Science , vol.313 , pp. 667-669
- Mair, G.R.¹ Braks, J.A.² Garver, L.S.³ Wiegant, J.C.⁴

45
- 0034050902
- Ross, D. T., Scherf, U., Eisen, M. B., Perou, C. M. et al., Nat. Genet. 2000, 24, 227-235.
- (2000) Nat. Genet , vol.24 , pp. 227-235
- Ross, D.T.¹ Scherf, U.² Eisen, M.B.³ Perou, C.M.⁴

46
- 1342287627
- Dray, S., Chessel, D., Thioulouse, J., Ecology 2003, 84, 3078-3089.
- (2003) Ecology , vol.84 , pp. 3078-3089
- Dray, S.¹ Chessel, D.² Thioulouse, J.³

47
- 0031719569
- Gimaret-Carpentier, C., Chessel, D., Pascal, J.-P., Plant Ecol. 1998, 138, 97-112.
- (1998) Plant Ecol , vol.138 , pp. 97-112
- Gimaret-Carpentier, C.¹ Chessel, D.² Pascal, J.-P.³

48
- 0001400228
- Robert, P., Escoufier, Y., Appl. Stat. 1976, 25, 257-265.
- (1976) Appl. Stat , vol.25 , pp. 257-265
- Robert, P.¹ Escoufier, Y.²

49
- 20744439107
- Culhane, A. C., Thioulouse, J., Perriere, G., Higgins, D. G., Bioinformatics 2005, 21, 2789-2790.
- (2005) Bioinformatics , vol.21 , pp. 2789-2790
- Culhane, A.C.¹ Thioulouse, J.² Perriere, G.³ Higgins, D.G.⁴

50
- 20444406724
- Chessel, D., Dufour, A. B., Thioulouse, J., R. News 2004, 4, 5-10.
- (2004) R. News , vol.4 , pp. 5-10
- Chessel, D.¹ Dufour, A.B.² Thioulouse, J.³

51
- 4243071596
- Bozdech, Z., Llinas, M., Pulliam, B. L., Wong, E. D. et al., PLoS Biol. 2003, 1, E5.
- (2003) PLoS Biol , vol.1
- Bozdech, Z.¹ Llinas, M.² Pulliam, B.L.³ Wong, E.D.⁴

52
- 4444339460
- Coulson, R. M., Hall, N., Ouzounis, C. A., Genome Res. 2004, 14, 1548-1554.
- (2004) Genome Res , vol.14 , pp. 1548-1554
- Coulson, R.M.¹ Hall, N.² Ouzounis, C.A.³

53
- 0029739742
- Sinden, R. E., Butcher, G. A., Billker, O., Fleck, S. L., Adv. Parasitol. 1996, 38, 53-117.
- (1996) Adv. Parasitol , vol.38 , pp. 53-117
- Sinden, R.E.¹ Butcher, G.A.² Billker, O.³ Fleck, S.L.⁴

54
- 19944429644
- Hall, N., Karras, M., Raine, J. D., Carlton, J. M. et al., Science 2005, 307, 82-86.
- (2005) Science , vol.307 , pp. 82-86
- Hall, N.¹ Karras, M.² Raine, J.D.³ Carlton, J.M.⁴

55
- 0036798578
- Ellison, G., Klinowska, T., Westwood, R. F., Docter, E. et al., Mol. Pathol. 2002, 55, 294-299.
- (2002) Mol. Pathol , vol.55 , pp. 294-299
- Ellison, G.¹ Klinowska, T.² Westwood, R.F.³ Docter, E.⁴

56
- 7444260846
- The ENCODE Project Consortium
- The ENCODE Project Consortium, Science 2004, 306, 636-640.
- (2004) Science , vol.306 , pp. 636-640

57
- 1942454210
- Semon, M., Duret, L., Trends Genet. 2004, 20, 229-232.
- (2004) Trends Genet , vol.20 , pp. 229-232
- Semon, M.¹ Duret, L.²

58
- 24644519490
- Carninci, P., Kasukawa, T., Katayama, S., Gough, J. et al., Science 2005, 309, 1559-1563.
- (2005) Science , vol.309 , pp. 1559-1563
- Carninci, P.¹ Kasukawa, T.² Katayama, S.³ Gough, J.⁴

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.