-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Maddyn, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389 3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Maddyn, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
20444482930
-
Investigation of the methanogen population structure and activity in a brackish lake sediment
-
Banning, N., Brock, F., Fry, J.C., Parkes, R.J., Hornibrook, E.R. Weightman, A.J. (2005) Investigation of the methanogen population structure and activity in a brackish lake sediment. Environ Microbiol 7, 947 960.
-
(2005)
Environ Microbiol
, vol.7
, pp. 947-960
-
-
Banning, N.1
Brock, F.2
Fry, J.C.3
Parkes, R.J.4
Hornibrook, E.R.5
Weightman, A.J.6
-
3
-
-
0031013145
-
Molecular phylogeny of Archaea from soil
-
Bintrim, S.B., Donohue, T.J., Handelsman, J., Roberts, G.P. Goodman, R.M. (1997) Molecular phylogeny of Archaea from soil. Proc Nat Acad Sci USA 94, 277 282.
-
(1997)
Proc Nat Acad Sci USA
, vol.94
, pp. 277-282
-
-
Bintrim, S.B.1
Donohue, T.J.2
Handelsman, J.3
Roberts, G.P.4
Goodman, R.M.5
-
4
-
-
0036793770
-
Microbial composition of near-boiling silica-depositing thermal springs throughout Yellowstone National Park
-
Blank, C.E., Cady, S.L. Pace, N.R. (2002) Microbial composition of near-boiling silica-depositing thermal springs throughout Yellowstone National Park. Appl Environ Microbiol 68, 123 135.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 123-135
-
-
Blank, C.E.1
Cady, S.L.2
Pace, N.R.3
-
5
-
-
0030860238
-
Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
-
Borneman, J. Triplett, E.W. (1997) Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63, 2647 2653.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2647-2653
-
-
Borneman, J.1
Triplett, E.W.2
-
6
-
-
19944392939
-
Soil microbial community response to land use change in an agricultural landscape of western Kenya
-
Bossio, D.A., Girvan, M.S., Verchot, L., Bullimore, J., Borelli, T., Albrecht, A., Scow, K.M., Ball, A.S. et al. (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microb Ecol 49, 50 62.
-
(2005)
Microb Ecol
, vol.49
, pp. 50-62
-
-
Bossio, D.A.1
Girvan, M.S.2
Verchot, L.3
Bullimore, J.4
Borelli, T.5
Albrecht, A.6
Scow, K.M.7
Ball, A.S.8
-
7
-
-
0038369933
-
Biodiversity community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
-
Bowman, J.P. McCuaig, R.D. (2003) Biodiversity community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl Environ Microbiol 69, 2463 2483.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2463-2483
-
-
Bowman, J.P.1
McCuaig, R.D.2
-
8
-
-
0034993578
-
Is 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? a case study in cyanobacteria
-
Boyer, S.L., Flechtner, V.R. Johansen, J.R. (2001) Is 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Mol Biol Evol 18, 1057 1069.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1057-1069
-
-
Boyer, S.L.1
Flechtner, V.R.2
Johansen, J.R.3
-
9
-
-
0034757185
-
PCR analyses of tRNA intergenic transcribed spacer, and randomly amplified polymorphic DNA reveal inter- and intraspecific relationships of Enterobacter cloacae strains
-
Clementino, M.M., de Filippis, I., Nascimento, C.R., Branquinho, R., Rocha, C.L. Martins, O.B. (2001) PCR analyses of tRNA intergenic transcribed spacer, and randomly amplified polymorphic DNA reveal inter- and intraspecific relationships of Enterobacter cloacae strains. J Clin Microbiol 39, 3865 3870.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 3865-3870
-
-
Clementino, M.M.1
De Filippis, I.2
Nascimento, C.R.3
Branquinho, R.4
Rocha, C.L.5
Martins, O.B.6
-
10
-
-
0037251969
-
The ribosomal database Project (RPD-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole, J.R., Chai, B., Marsh, T.L., Farris, R.J., Wang, Q., Kulam, S.A., Chandra, S., Mc Garrell, D.M. et al. (2003) The ribosomal database Project (RPD-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31, 442 443.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 442-443
-
-
Cole, J.R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
Chandra, S.7
Mc Garrell, D.M.8
-
11
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong, E.F. (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89, 5685 5689.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
Delong, E.F.1
-
12
-
-
0031769609
-
Everything in moderation Archaea as 'non-extremophiles'
-
DeLong, E.F. (1998) Everything in moderation Archaea as 'non-extremophiles'. Curr Opin Genet Dev 8, 649 654.
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 649-654
-
-
Delong, E.F.1
-
13
-
-
19144362371
-
Microbial community genomics in the ocean
-
DeLong, E.F. (2005) Microbial community genomics in the ocean. Nat Rev Microbiol 3, 459 469.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 459-469
-
-
Delong, E.F.1
-
14
-
-
0029310473
-
Rapid differentiation of hyperthermophilic Archaea by restriction mapping of the intergenic spacer regions of the ribosomal RNA operons
-
DiRuggiero, J., Tuttle, J.H. Robb, F.T. (1995) Rapid differentiation of hyperthermophilic Archaea by restriction mapping of the intergenic spacer regions of the ribosomal RNA operons. Mol Mar Biol Biotec 4, 123 127.
-
(1995)
Mol Mar Biol Biotec
, vol.4
, pp. 123-127
-
-
Diruggiero, J.1
Tuttle, J.H.2
Robb, F.T.3
-
15
-
-
3242747697
-
Comparison of Euryarchaea strains in the guts and food-soil of the soil-feeding termite Cubitermes fungifaber across different soil types
-
Donovan, S.E., Purdy, K.J., Kane, M.D. Eggleton, P. (2004) Comparison of Euryarchaea strains in the guts and food-soil of the soil-feeding termite Cubitermes fungifaber across different soil types. Appl Environ Microbiol 70, 3884 3892.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3884-3892
-
-
Donovan, S.E.1
Purdy, K.J.2
Kane, M.D.3
Eggleton, P.4
-
16
-
-
0032888598
-
Novel 16S rRNA gene sequences retrieved from highly saline brine sediments of Kebrit deep, red Sea
-
Eder, W., Ludwig, W. Huber, R. (1999) Novel 16S rRNA gene sequences retrieved from highly saline brine sediments of Kebrit deep, red Sea. Arch Microbiol 172, 213 218.
-
(1999)
Arch Microbiol
, vol.172
, pp. 213-218
-
-
Eder, W.1
Ludwig, W.2
Huber, R.3
-
17
-
-
18744398715
-
Prokaryotic phylogenetic diversity and corresponding geochemical data of brine-seawater interface of the Shaban Deep
-
Eder, W., Schimidt, M., Koch, M., Garbe-Schonberg, D. Huber, R. (2002) Prokaryotic phylogenetic diversity and corresponding geochemical data of brine-seawater interface of the Shaban Deep. Red Sea Environ Microbiol 4, 758 763.
-
(2002)
Red Sea Environ Microbiol
, vol.4
, pp. 758-763
-
-
Eder, W.1
Schimidt, M.2
Koch, M.3
Garbe-Schonberg, D.4
Huber, R.5
-
18
-
-
10644225888
-
Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic 'Epsilonproteobacteria'
-
Engel, A.S., Porter, M.L., Stern, L.A., Quinlan, S. Bennett, P.C. (2004) Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic 'Epsilonproteobacteria'. FEMS Microbiol Ecol 51, 31 53.
-
(2004)
FEMS Microbiol Ecol
, vol.51
, pp. 31-53
-
-
Engel, A.S.1
Porter, M.L.2
Stern, L.A.3
Quinlan, S.4
Bennett, P.C.5
-
19
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. 1. Accuracy assessment
-
Ewing, B., Hillier, L., Wendl, M.C. Green, P. (1998) Base-calling of automated sequencer traces using phred. 1. Accuracy assessment. Genome Res 8, 175 185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
20
-
-
0026525546
-
Novel major archaebacterial group from marine plankton
-
Fuhrman, J.A., McCallum, K. Davis, A.A. (1992) Novel major archaebacterial group from marine plankton. Nature 356, 148 149.
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
21
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
Godon, J.J., Zumstein, E., Dabert, P., Habouzit, F. Moletta, R. (1997) Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 63, 2802 2813.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
22
-
-
0033136102
-
Novel archaeal phylotypes from an East African alkaline saltern
-
Grant, S., Grant, W.D., Jones, B.E., Kato, C. Li, L. (1999) Novel archaeal phylotypes from an East African alkaline saltern. Extremophiles 3, 139 145.
-
(1999)
Extremophiles
, vol.3
, pp. 139-145
-
-
Grant, S.1
Grant, W.D.2
Jones, B.E.3
Kato, C.4
Li, L.5
-
23
-
-
0036001071
-
Occurrence and activity of Archaea in aerated activated sludge wastewater treatment plants
-
Gray, N.D., Miskin, I.P., Kornilova, O., Curtis, T.P. Head, I.M. (2002) Occurrence and activity of Archaea in aerated activated sludge wastewater treatment plants. Environ Microbiol 4, 158 168.
-
(2002)
Environ Microbiol
, vol.4
, pp. 158-168
-
-
Gray, N.D.1
Miskin, I.P.2
Kornilova, O.3
Curtis, T.P.4
Head, I.M.5
-
24
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang, X. Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res 9, 868 877.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
25
-
-
0242285526
-
Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill
-
Huang, L.N., Chen, Y.Q., Zhou, H., Luo, S., Lan, C.Y. Qu, L.H. (2003) Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill. FEMS Microbiol Ecol 46, 171 177.
-
(2003)
FEMS Microbiol Ecol
, vol.46
, pp. 171-177
-
-
Huang, L.N.1
Chen, Y.Q.2
Zhou, H.3
Luo, S.4
Lan, C.Y.5
Qu, L.H.6
-
26
-
-
0037057122
-
Diversity and structure of the archaeal community in the leachate of a full-scale recirculating landfill as examined by direct 16S rRNA gene sequence retrieval
-
Huang, L.N., Zhou, H., Chen, Y.Q., Luo, S., Lan, C.Y. Qu, L.H. (2002) Diversity and structure of the archaeal community in the leachate of a full-scale recirculating landfill as examined by direct 16S rRNA gene sequence retrieval. FEMS Microbiol Lett 214, 235 240.
-
(2002)
FEMS Microbiol Lett
, vol.214
, pp. 235-240
-
-
Huang, L.N.1
Zhou, H.2
Chen, Y.Q.3
Luo, S.4
Lan, C.Y.5
Qu, L.H.6
-
27
-
-
0000752502
-
The nonconcept of species diversity: A critique and alternative parameters
-
Hurlbert, S.H. (1971) The nonconcept of species diversity: a critique and alternative parameters. Ecology 52, 577 586.
-
(1971)
Ecology
, vol.52
, pp. 577-586
-
-
Hurlbert, S.H.1
-
28
-
-
0032143814
-
Microbial diversity of soda lakes
-
Jones, B.E., Grant, W.D., Duckworth, A.W. Owenson, G.G. (1998) Microbial diversity of soda lakes. Extremophiles 2, 191 200.
-
(1998)
Extremophiles
, vol.2
, pp. 191-200
-
-
Jones, B.E.1
Grant, W.D.2
Duckworth, A.W.3
Owenson, G.G.4
-
29
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111 120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
30
-
-
0030613147
-
Methanogen flora of paddy soils in Japan
-
Kudo, Y., Nakajima, T., Miyaki, T. Oyaizu, H. (1997) Methanogen flora of paddy soils in Japan. FEMS Microbiol Ecol 22, 39 48.
-
(1997)
FEMS Microbiol Ecol
, vol.22
, pp. 39-48
-
-
Kudo, Y.1
Nakajima, T.2
Miyaki, T.3
Oyaizu, H.4
-
31
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar, S., Tamura, K., Jakobsen, I.B. Nei, M. (2001) MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17, 1244 1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
32
-
-
0001857117
-
16S/23S rRNA sequencing
-
In: ed. Stackebrandt, E. Goodfellow, M. pp. New York: Wiley.
-
Lane, D.J. (1991) 16S/23S rRNA sequencing. In : Nucleic Acid Techniques in Bacterial Systematics. ed. Stackebrandt, E. Goodfellow, M. pp. 115 175. New York : Wiley.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics.
, pp. 115-175
-
-
Lane, D.J.1
-
33
-
-
0029782668
-
Physiological ecology of Methanobrevibacter cuticularis sp. nov. and Methanobrevibacter curvatus sp. nov., isolated from the hindgut of the termite Reticulitermes flavipes
-
Leadbetter, J.R. Breznak, J.A. (1996) Physiological ecology of Methanobrevibacter cuticularis sp. nov. and Methanobrevibacter curvatus sp. nov., isolated from the hindgut of the termite Reticulitermes flavipes. Appl Environ Microbiol 62, 3620 3631.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3620-3631
-
-
Leadbetter, J.R.1
Breznak, J.A.2
-
34
-
-
0034528803
-
Single strand conformation polymorphism monitoring of 16S rDNA Archaea during start-up of an anaerobic digester
-
Leclerc, M., Delbes, C., Moletta, R. Godon, J.J. (2001) Single strand conformation polymorphism monitoring of 16S rDNA Archaea during start-up of an anaerobic digester. FEMS Microbiol Ecol 34, 213 220.
-
(2001)
FEMS Microbiol Ecol
, vol.34
, pp. 213-220
-
-
Leclerc, M.1
Delbes, C.2
Moletta, R.3
Godon, J.J.4
-
35
-
-
0035198752
-
Novel haloarchaeal-related lineage is widely distributed in deep oceanic regions
-
López-Garcia, P., Moreira, D., Lopez-Lopez, A. Rodriguez-Valera, F.A. (2001) Novel haloarchaeal-related lineage is widely distributed in deep oceanic regions. Environ Microbiol 3, 72 78.
-
(2001)
Environ Microbiol
, vol.3
, pp. 72-78
-
-
López-Garcia, P.1
Moreira, D.2
Lopez-Lopez, A.3
Rodriguez-Valera, F.A.4
-
36
-
-
21244497377
-
Links between tree species, symbiotic fungal diversity and ecosystem functioning in simplified tropical ecosystems
-
Lovelock, C.E. Ewel, J.J. (2005) Links between tree species, symbiotic fungal diversity and ecosystem functioning in simplified tropical ecosystems. New Phytol 167, 219 228.
-
(2005)
New Phytol
, vol.167
, pp. 219-228
-
-
Lovelock, C.E.1
Ewel, J.J.2
-
37
-
-
0033933786
-
Archaeal population dynamics during sequential reduction processes in rice field soil
-
Lueders, T. Friedrich, M. (2000) Archaeal population dynamics during sequential reduction processes in rice field soil. Appl Environ Microbiol 66, 2732 2742.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2732-2742
-
-
Lueders, T.1
Friedrich, M.2
-
38
-
-
31544448331
-
Microbial biogeography: Putting microorganism on the map
-
Martiny, J.B., Bohannan, B.J, Brown, J.H., Colwell, R.K., Fuhrman, J.A., Green, J.L., Horner-Devine, M.C., Kane, M. et al. (2006) Microbial biogeography: putting microorganism on the map. Nat Rev Microbiol 4, 102 112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.1
Bohannan, B.J.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
-
39
-
-
0030620440
-
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel
-
Massana, R., Murray, A.E., Preston, C.M. DeLong, E.F. (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel. Appl Environ Microbiol 63, 50 56.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 50-56
-
-
Massana, R.1
Murray, A.E.2
Preston, C.M.3
Delong, E.F.4
-
40
-
-
0030734675
-
Phylogenetic analysis of Group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea
-
McInerney, J.O., Mullarkey, M., Wernecke, M.E. Powell, R. (1997) Phylogenetic analysis of Group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea. Proc R Soc Lond Ser B Biol Sci 264, 1663 1669.
-
(1997)
Proc R Soc Lond Ser B Biol Sci
, vol.264
, pp. 1663-1669
-
-
McInerney, J.O.1
Mullarkey, M.2
Wernecke, M.E.3
Powell, R.4
-
41
-
-
0032126875
-
Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil
-
Moreira, F.M., Haukka, K. Young, J.P.W. (1998) Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil. Mol Ecol 7, 889 895.
-
(1998)
Mol Ecol
, vol.7
, pp. 889-895
-
-
Moreira, F.M.1
Haukka, K.2
Young, J.P.W.3
-
42
-
-
0027460328
-
Profiling of complex microbial-populations by denaturing chain reaction-amplified genes-coding for 16S ribosomal-RNA
-
Muyzer, G., DeWaal, E.C. Uitterlinden, A.G. (1993) Profiling of complex microbial-populations by denaturing chain reaction-amplified genes-coding for 16S ribosomal-RNA. App Environ Microbiol 59, 695 700.
-
(1993)
App Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
Dewaal, E.C.2
Uitterlinden, A.G.3
-
43
-
-
12744281935
-
The extraction and purification of microbial DNA from sediments
-
Ogram, A., Sayler, G.S. Barkay, T. (1987) The extraction and purification of microbial DNA from sediments. J Microbiol Methods 7, 57 66.
-
(1987)
J Microbiol Methods
, vol.7
, pp. 57-66
-
-
Ogram, A.1
Sayler, G.S.2
Barkay, T.3
-
44
-
-
0037188554
-
Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments
-
Orphan, V.J., House, C.H., Hinrichs, K-U., McKeegan, K.D. DeLong, E.F. (2002) Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments. Proc Natl Acad Sci USA 99, 7663 7668.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7663-7668
-
-
Orphan, V.J.1
House, C.H.2
Hinrichs, K.-U.3
McKeegan, K.D.4
Delong, E.F.5
-
45
-
-
13844307658
-
Investigation of bacterial diversity in Brazilian tropical estuarine sediments reveals high actinobacterial diversity
-
Piza, F.F., Prado, P.I. Manfio, G.P. (2004) Investigation of bacterial diversity in Brazilian tropical estuarine sediments reveals high actinobacterial diversity. Antonie Van Leeuwenhoek 86, 317 328.
-
(2004)
Antonie Van Leeuwenhoek
, vol.86
, pp. 317-328
-
-
Piza, F.F.1
Prado, P.I.2
Manfio, G.P.3
-
46
-
-
15844365305
-
A psychrophilic crenarchaeon inhabits a marine sponge: Crenarchaeum symbiosum gen. nov. sp. nov
-
Preston, C.M., Wu, K.Y., Molinski, T.F. DeLong, E.F. (1996) A psychrophilic crenarchaeon inhabits a marine sponge: Crenarchaeum symbiosum gen. nov. sp. nov. Proc Natl Acad Sci USA 93, 6241 6246.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 6241-6246
-
-
Preston, C.M.1
Wu, K.Y.2
Molinski, T.F.3
Delong, E.F.4
-
47
-
-
27844500146
-
Phylogenetic diversity and ecology of environmental Archaea
-
Robertson, C.E., Harris, J.K., Spear, J.R. Pace, N.R. (2005) Phylogenetic diversity and ecology of environmental Archaea. Curr Opin Microbiol 8, 638 642.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 638-642
-
-
Robertson, C.E.1
Harris, J.K.2
Spear, J.R.3
Pace, N.R.4
-
48
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406 425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
49
-
-
0003903343
-
-
2nd edn. vol. 2. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
-
Sambrook, J., Fritsh, E.F. Maniats, T. (1989) A Laboratory Manual, 2nd edn. vol. 2. Cold Spring Harbor, NY : Cold Spring Harbor Laboratory Press.
-
(1989)
A Laboratory Manual
-
-
Sambrook, J.1
Fritsh, E.F.2
Maniats, T.3
-
50
-
-
0035119312
-
Influence of long-term heavy-metal contamination on microbial communities in soil
-
Sandaa, R.A., Torsvik, V. Enger, O. (2001) Influence of long-term heavy-metal contamination on microbial communities in soil. Soil Biol Biochem 33, 287 295.
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 287-295
-
-
Sandaa, R.A.1
Torsvik, V.2
Enger, O.3
-
51
-
-
0028822727
-
Molecular probes for diagnosis of fungal infections
-
Sandhu, G.S., Kline, B.C., Stockman, L. Roberts, G.D. (1995) Molecular probes for diagnosis of fungal infections. J Clin Microbiol 33, 2913 2919.
-
(1995)
J Clin Microbiol
, vol.33
, pp. 2913-2919
-
-
Sandhu, G.S.1
Kline, B.C.2
Stockman, L.3
Roberts, G.D.4
-
52
-
-
19144364248
-
-
New Orleans, Lousiana: 104th general meeting of the American Society for Microbiology.
-
Schleper, C. (2004) Population genomics of soil microbial communities. New Orleans, Lousiana : 104th general meeting of the American Society for Microbiology.
-
(2004)
Population Genomics of Soil Microbial Communities.
-
-
Schleper, C.1
-
53
-
-
19144373707
-
Genomic studies of uncultivated archaea
-
Schleper, C., Jurgens, G. Jonuscheit, M. (2005) Genomic studies of uncultivated archaea. Nature 3, 479 488.
-
(2005)
Nature
, vol.3
, pp. 479-488
-
-
Schleper, C.1
Jurgens, G.2
Jonuscheit, M.3
-
54
-
-
0031719182
-
Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis
-
Sekiguchi, Y., Kamagata, Y., Syutsubo, K., Ohashi, A., Harada, H. Nakamura, K. (1998) Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology 144, 2655 2665.
-
(1998)
Microbiology
, vol.144
, pp. 2655-2665
-
-
Sekiguchi, Y.1
Kamagata, Y.2
Syutsubo, K.3
Ohashi, A.4
Harada, H.5
Nakamura, K.6
-
55
-
-
0010446496
-
Use of rarefaction and related methods in ecology
-
In. ed. Dickson, K.L., Cairns, J. Livingston, R.J. pp. Philadelphia, PA: ASTM STP 652. American Society for Testing and Materials.
-
Simberloff, D. (1978) Use of rarefaction and related methods in ecology. In Biological Data in Water Pollution Assessment: Quantitative and Statistical Analyses ed. Dickson, K.L., Cairns, J. Livingston, R.J. pp. 150 165. Philadelphia, PA : ASTM STP 652. American Society for Testing and Materials.
-
(1978)
Biological Data in Water Pollution Assessment: Quantitative and Statistical Analyses
, pp. 150-165
-
-
Simberloff, D.1
-
56
-
-
1642296563
-
Spatial heterogeneity of Crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling
-
Sliwinski, M.K. Goodman, R.M. (2004) Spatial heterogeneity of Crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling. Appl Environ Microbiol 70, 1811 1820.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1811-1820
-
-
Sliwinski, M.K.1
Goodman, R.M.2
-
57
-
-
0027458468
-
Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification
-
Smalla, K., Cresswell, N., Mendonca-Hagle, L.C., Wolters, A. van Elsas, J.D. (1993) Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification. J Appl Bacteriol 74, 78 85.
-
(1993)
J Appl Bacteriol
, vol.74
, pp. 78-85
-
-
Smalla, K.1
Cresswell, N.2
Mendonca-Hagle, L.C.3
Wolters, A.4
Van Elsas, J.D.5
-
58
-
-
23944448941
-
Archaeal phylotypes in a metal-rich and low-activity deep subsurface sediment of the Peru Basin, ODP Leg 201, Site 1231
-
Sørensen, K.B., Lauer, A. Teske, A. (2004) Archaeal phylotypes in a metal-rich and low-activity deep subsurface sediment of the Peru Basin, ODP Leg 201, Site 1231. Geobiology, 2, 151 161.
-
(2004)
Geobiology
, vol.2
, pp. 151-161
-
-
Sørensen, K.B.1
Lauer, A.2
Teske, A.3
-
59
-
-
0344035670
-
Genetic diversity of archaea in deep-sea hydrothermal vent environments
-
Takai, K. Horikoshi, K. (1999) Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 152, 1285 1297.
-
(1999)
Genetics
, vol.152
, pp. 1285-1297
-
-
Takai, K.1
Horikoshi, K.2
-
60
-
-
0036205605
-
Microbial diversity of hydrothermal sediments in the Guaymas basin: Evidence for anaerobic methanotrophic communities
-
Teske, A., Hinrichs, K.U., Edgcomb, V., Vera Gomez, A., Kysela, D., Sylva, S.P., Sogin, M.L. Jannasch, H.W. (2002) Microbial diversity of hydrothermal sediments in the Guaymas basin: evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68, 1994 2007.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1994-2007
-
-
Teske, A.1
Hinrichs, K.U.2
Edgcomb, V.3
Vera Gomez, A.4
Kysela, D.5
Sylva, S.P.6
Sogin, M.L.7
Jannasch, H.W.8
-
61
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24, 4876 4882.
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
62
-
-
0032054378
-
Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments
-
Vetriani, C., Reysenbach, A.L. Dore, J. (1998) Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments. FEMS Microbiol Lett 161, 83 88.
-
(1998)
FEMS Microbiol Lett
, vol.161
, pp. 83-88
-
-
Vetriani, C.1
Reysenbach, A.L.2
Dore, J.3
-
63
-
-
2342579410
-
Impact of virioplankton on archaeal and bacterial community richness as assessed in seawater batch cultures
-
Winter, C., Smit, A., Herndl, G.J. Weinbauer, M.G. (2004) Impact of virioplankton on archaeal and bacterial community richness as assessed in seawater batch cultures. Appl Environ Microbiol 70, 804 813.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 804-813
-
-
Winter, C.1
Smit, A.2
Herndl, G.J.3
Weinbauer, M.G.4
-
64
-
-
0035131221
-
Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system
-
Wu, J.H., Liu, W.T., Tseng, I.C. Cheng, S.S. (2001) Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Microbiology 147, 373 382.
-
(2001)
Microbiology
, vol.147
, pp. 373-382
-
-
Wu, J.H.1
Liu, W.T.2
Tseng, I.C.3
Cheng, S.S.4
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