PCR analyses of tRNA intergenic spacer, 16S-23S internal transcribed spacer, and randomly amplified polymorphic DNA reveal inter- and intraspecific relationships of Enterobacter cloacae strains

Journal of Clinical Microbiology

Volumn 39, Issue 11, 2001, Pages 3865-3870

  Clementino, M M ^a   De Filippis, I ^a   Nascimento, C R ^a   Branquinho, R ^a   Rocha, C L ^a   Martins, O B ^a  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; SPACER DNA; TRANSFER RNA;

ARTICLE; BACTERIUM IDENTIFICATION; ENTEROBACTER AEROGENES; ENTEROBACTER CLOACAE; ENTEROBACTER SAKAZAKII; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; RIBOTYPING;

DNA, INTERGENIC; DNA, RIBOSOMAL SPACER; ENTEROBACTER CLOACAE; ENTEROBACTERIACEAE INFECTIONS; HUMANS; PHYLOGENY; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; REPRODUCIBILITY OF RESULTS; RIBOTYPING; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; RNA, TRANSFER;

BACTERIA (MICROORGANISMS); ENTEROBACTER AEROGENES; ENTEROBACTER CLOACAE; ENTEROBACTER SAKAZAKII; NEGIBACTERIA;

EID: 0034757185     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.39.11.3865-3870.2001     Document Type: Article

References (38)

1. Application of tRNA intergenic spacer for identification of Enterococcus species
2. Principles and applications of methods for DNA-based typing of microbial organisms
3. Optimization and reproducibility of random amplified DNA in human
4. Rapid genotyping shows the absence of cross contamination in Enterobacter cloacae nosocomial infections
5. The ribonuclease III site flanking 23S sequences in the 30S ribosomal precursor RNA of Escherichia coli
6. Biological methods. Biological safety tests: Sterility
7. Facultatively anaerobic gram-negative rods
8. Enterobacter bacteremia in surgical patients
9. A novel method for cloning DNA of plant-pathogenic mycoplasmalike organisms
10. Control of rRNA transcription in Escherichia coli
11. Epidemiological survey of an outbreak of multi-resistant Serratia marcescens by PCR-fingerprinting
12. Identification of clinically relevant viridans streptococci by analysis of transfer DNA intergenic spacer length polymorphism
13. Acinetobacter species identification by using tRNA spacer fingerprinting
14. Use of the ribosomal genes spacer region in studies of prokaryotic diversity
15. Enterobacter: An emerging nosocomial pathogen
16. New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
17. Epidemiological fingerprinting of Enterobacter cloacae by small fragment restriction endonuclease analysis and pulsed-field gel electrophoresis of genomic restriction fragments
18. Loss of the spacer loop sequence from the rrnB operon in the Escherichia coli K-12 subline that bears the relA1 mutation
19. Molecular epidemiology of Pseudomonas cepacia determined by polymerase chain reaction ribotyping
20. A300 kilobase interval genetic map of rice including 283 expressed sequences
21. Development of a random amplification of polymorphic DNA typing method for Listeria monocytogenes
22. Genotype analysis of Burkholderia pseudomallei using randomly amplified polymorphic DNA (RAPD): Indicative of genetic difference amongst environmentat and clinical isolates
23. Gene conversion drives within genic sequences: Concerted evolution of ribosomal RNA genes in bacteria and archaea
24. Rapid and accurate identification of Staphylococcus species by tRNA intergenic spacer length polymorphism analysis
25. Retrospective analysis of plasmid patterns in a study of burn unit outbreaks of infection due to Enterobacter cloacae
26. Length polymorphisms in tRNA intergenic spacers detected by using the polymerase chain reaction can distinguish streptococcal strains and species
27. Screening of RAPD markers linked to the photoperiod-sensitive gene in rice chromosome 6 using bulked segregant analysis
28. Epidemiological typing of isolates from an outbreak of infection with multidrug-resistant Enterobacter cloacae by repetitive extragenic palindromic unit b1-primed PCR and pulsed-field gel electrophoresis
29. Microbiological tests. Sterility tests
30. Comparison of PCR-based DNA fingerprinting techniques for the identification of Listeria species and their use for atypical Listeria isolates
31. Identification of Acinetobacter genomic species by amplified ribosomal DNA restriction analysis
32. Fingerprinting genomes using PCR with arbitrary primers
33. Genomic fingerprints produced by PCR with consensus tRNA gene primers
34. PCR-amplified length polymorphisms in tRNA intergenic spacers for categorizing staphylococci
35. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers
36. Random amplified polymorphic DNA analysis of clinically and environmentally isolated Cryptococcus neoformans in Nagasaki