-
1
-
-
0026588023
-
DNA binding analysis of glucocorticoid receptor specificity mutants
-
Alroy, I., and L. P. Freedman. 1992. DNA binding analysis of glucocorticoid receptor specificity mutants. Nucleic Acids Res. 20:1045-1052.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1045-1052
-
-
Alroy, I.1
Freedman, L.P.2
-
3
-
-
0001564321
-
Danger of multiple-time-step methods
-
Biesiadecki, J. J., and R. D. Skeel. 1993. Danger of multiple-time-step methods. J. Comput. Phys. 109:318-328.
-
(1993)
J. Comput. Phys.
, vol.109
, pp. 318-328
-
-
Biesiadecki, J.J.1
Skeel, R.D.2
-
4
-
-
0030941120
-
How hormone receptor-DNA binding affects nucleosomal DNA. The role of symmetry
-
Bishop, T. C., D. Kosztin, and K. Schulten. 1997. How hormone receptor-DNA binding affects nucleosomal DNA. The role of symmetry. Biophys. J. 72:2056-2067.
-
(1997)
Biophys. J.
, vol.72
, pp. 2056-2067
-
-
Bishop, T.C.1
Kosztin, D.2
Schulten, K.3
-
5
-
-
0030025260
-
Molecular dynamics study of glucocorticoid receptor-DNA binding
-
Bishop, T., and K. Schulten. 1996. Molecular dynamics study of glucocorticoid receptor-DNA binding. Proteins Struct. Funct. Genet. 24: 115-133.
-
(1996)
Proteins Struct. Funct. Genet.
, vol.24
, pp. 115-133
-
-
Bishop, T.1
Schulten, K.2
-
6
-
-
84986512474
-
CHARMm: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus. 1983. CHARMm: a program for macromolecular energy, minimization, and dynamics calculations. J. Comp. Chem. 4:187-217.
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
7
-
-
0001031179
-
Proteins: A theoretical perspective of dynamics, structure and thermodynamics
-
Wiley, New York
-
Brooks, C. L., M. Karplus, and B. M. Pettit. 1989. Proteins: a theoretical perspective of dynamics, structure and thermodynamics. In Advances in Chemical Physics, Wiley, New York. 71.
-
(1989)
Advances in Chemical Physics
, pp. 71
-
-
Brooks, C.L.1
Karplus, M.2
Pettit, B.M.3
-
8
-
-
0003769049
-
-
The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University
-
Brünger, A. T. 1992. X-PLOR, Version 3.1: A System for X-ray Crystallography and NMR. The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University.
-
(1992)
X-PLOR, Version 3.1: A System for X-ray Crystallography and NMR
-
-
Brünger, A.T.1
-
9
-
-
0024356431
-
Two amino acids within the knuckle of the first zinc finger specify DNA response element activation by the glucocorticoid receptor
-
Danielsen, M., L. Hinck, and G. M. Ringold. 1989. Two amino acids within the knuckle of the first zinc finger specify DNA response element activation by the glucocorticoid receptor. Cell. 57:1131-1138.
-
(1989)
Cell
, vol.57
, pp. 1131-1138
-
-
Danielsen, M.1
Hinck, L.2
Ringold, G.M.3
-
10
-
-
0028814905
-
Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain in complex with DNA and free in solution
-
Eriksson, M., T. Härd, and L. Nilsson. 1995. Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain in complex with DNA and free in solution. Biophys. J. 68:402-426.
-
(1995)
Biophys. J.
, vol.68
, pp. 402-426
-
-
Eriksson, M.1
Härd, T.2
Nilsson, L.3
-
11
-
-
0028850103
-
Structure, thermodynamics, and cooperativity of the glucocorticoid receptor DNA-DNA-binding domain in complex with different response elements. Molecular dynamics simulation and free energy perturbation study
-
Eriksson, M. A. L., and L. Nilsson. 1995. Structure, thermodynamics, and cooperativity of the glucocorticoid receptor DNA-DNA-binding domain in complex with different response elements. Molecular dynamics simulation and free energy perturbation study. J. Mol. Biol. 253:453-472.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 453-472
-
-
Eriksson, M.A.L.1
Nilsson, L.2
-
12
-
-
0023913120
-
The steroid and thyroid hormone receptor superfamily
-
Evans, R. M. 1988. The steroid and thyroid hormone receptor superfamily. Science. 240:889-895.
-
(1988)
Science
, vol.240
, pp. 889-895
-
-
Evans, R.M.1
-
13
-
-
0028118764
-
Hin recombinase bound to DNA: The origin of specificity in major and minor groove interactions
-
Feng, J., R. C. Johnson, and R. E. Dickerson. 1994. Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions. Science. 263:348-355.
-
(1994)
Science
, vol.263
, pp. 348-355
-
-
Feng, J.1
Johnson, R.C.2
Dickerson, R.E.3
-
14
-
-
0000246675
-
Molecular dynamics studies of the behaviour of water molecules and small ions in concentrated solutions of polymeric B-DNA
-
Forester, T. R., and I. R. McDonald. 1991. Molecular dynamics studies of the behaviour of water molecules and small ions in concentrated solutions of polymeric B-DNA. Mol. Phys. 72:643-660.
-
(1991)
Mol. Phys.
, vol.72
, pp. 643-660
-
-
Forester, T.R.1
McDonald, I.R.2
-
15
-
-
0027498883
-
On the mechanism of DNA binding by nuclear hormone receptors: A structural and functional perspective
-
Freedman, L. P., and B. F. Luisi. 1993. On the mechanism of DNA binding by nuclear hormone receptors: a structural and functional perspective. J. Cell. Biochem. 51:140-150.
-
(1993)
J. Cell. Biochem.
, vol.51
, pp. 140-150
-
-
Freedman, L.P.1
Luisi, B.F.2
-
16
-
-
0029010368
-
The basis for half-site specificity explored through a non-cognate steroid receptor-DNA complex
-
Gewirth, D. T., and P. Sigler. 1995. The basis for half-site specificity explored through a non-cognate steroid receptor-DNA complex. Nat. Struct. Biol. 2:386-394.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 386-394
-
-
Gewirth, D.T.1
Sigler, P.2
-
17
-
-
0023254634
-
Oestradiol induction of a glucocorticoid-responsive gene by a chimaeric receptor
-
Green, S., and P. Chambon. 1987. Oestradiol induction of a glucocorticoid-responsive gene by a chimaeric receptor. Nature. 325:75-78.
-
(1987)
Nature
, vol.325
, pp. 75-78
-
-
Green, S.1
Chambon, P.2
-
18
-
-
0024095250
-
The n-terminal DNA binding "zinc-finger' of the oestrogen and glucocorticoid receptors determines target gene specificity
-
Green, S., V. Kumar, I. Theulaz, W. Wahli, and P. Chambon. 1988. The n-terminal DNA binding "zinc-finger' of the oestrogen and glucocorticoid receptors determines target gene specificity. EMBO J. 7:3037-3044.
-
(1988)
EMBO J.
, vol.7
, pp. 3037-3044
-
-
Green, S.1
Kumar, V.2
Theulaz, I.3
Wahli, W.4
Chambon, P.5
-
19
-
-
0026498015
-
Thermodynamic stoichiometries of participation of water, cations, and anions in specific and non-specific binding of lac repressor to DNA
-
Ha, J.-H., M. W. Capp, M. D. Hohenwalter, W. Baskerville, and M. T. Record. 1992. Thermodynamic stoichiometries of participation of water, cations, and anions in specific and non-specific binding of lac repressor to DNA. J. Mol. Biol. 228:252-264.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 252-264
-
-
Ha, J.-H.1
Capp, M.W.2
Hohenwalter, M.D.3
Baskerville, W.4
Record, M.T.5
-
20
-
-
0024378717
-
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
-
Ha, J.-H., R. S. Spolar, and M. T. Record. 1989. Role of the hydrophobic effect in stability of site-specific protein-DNA complexes. J. Mol. Biol. 209:801-816.
-
(1989)
J. Mol. Biol.
, vol.209
, pp. 801-816
-
-
Ha, J.-H.1
Spolar, R.S.2
Record, M.T.3
-
21
-
-
0028061636
-
Molecular dynamics simulations in solvent of the glucocorticoid receptor protein in complex with a glucocorticoid response element DNA sequence
-
Harris, L. F., M. R. Sullivan, P. D. Popken-Harris, and D. F. Hickok. 1994. Molecular dynamics simulations in solvent of the glucocorticoid receptor protein in complex with a glucocorticoid response element DNA sequence. J. Biomed. Struct. Dyn. 12:249-270.
-
(1994)
J. Biomed. Struct. Dyn.
, vol.12
, pp. 249-270
-
-
Harris, L.F.1
Sullivan, M.R.2
Popken-Harris, P.D.3
Hickok, D.F.4
-
23
-
-
0029092698
-
Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations
-
Hunenberger, P. H., A. E. Mark, and W. F. van Gunsteren. 1995. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations. J. Mol. Biol. 252:175-194.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 175-194
-
-
Hunenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
24
-
-
0024276807
-
Anisotropy and anharmonicity of atomic fluctuations in proteins: Implications for x-ray analysis
-
Ichiye, T., and M. Karplus. 1988. Anisotropy and anharmonicity of atomic fluctuations in proteins: implications for x-ray analysis. Biochemistry. 27:3487-3497.
-
(1988)
Biochemistry
, vol.27
, pp. 3487-3497
-
-
Ichiye, T.1
Karplus, M.2
-
25
-
-
0012984110
-
Modeling DNA in aqueous solutions
-
Jayaram, B., N. Aneja, E. Rajasekaran, V. Arora, A. Das, V. Ranganathan, and V. Gupta. 1994. Modeling DNA in aqueous solutions. J. Sci. Indust. Res. 53:88-105.
-
(1994)
J. Sci. Indust. Res.
, vol.53
, pp. 88-105
-
-
Jayaram, B.1
Aneja, N.2
Rajasekaran, E.3
Arora, V.4
Das, A.5
Ranganathan, V.6
Gupta, V.7
-
26
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
27
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
Kabsch, W. 1976. A solution for the best rotation to relate two sets of vectors. Acta Crystallogr. A. 32:922-923.
-
(1976)
Acta Crystallogr. A
, vol.32
, pp. 922-923
-
-
Kabsch, W.1
-
28
-
-
0027483012
-
Cocrystal structure of TBP recognizing the minor groove of a TATA element
-
Kim, J. L., D. B. Nikolov, and S. K. Burley. 1993. Cocrystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365: 520-527.
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
29
-
-
0026244229
-
MOLSCRIPT - A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. 1991. MOLSCRIPT - a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.1
-
30
-
-
0022720813
-
The chicken oestrogen receptor sequence: Homology with v-erbA and the human oestrogen and glucocorticoid receptors
-
Krust, A., S. Green, P. Argos, V. Kumar, P. Walter, J. Bornert, and P. Chambon. 1986. The chicken oestrogen receptor sequence: homology with v-erbA and the human oestrogen and glucocorticoid receptors. EMBO J. 5:891-897.
-
(1986)
EMBO J.
, vol.5
, pp. 891-897
-
-
Krust, A.1
Green, S.2
Argos, P.3
Kumar, V.4
Walter, P.5
Bornert, J.6
Chambon, P.7
-
31
-
-
0023808861
-
The oestrogen receptor binds tightly to its responsive element as a ligand induced homodimer
-
Kumar, V., and P. Chambon. 1988. The oestrogen receptor binds tightly to its responsive element as a ligand induced homodimer. Cell. 55: 145-156.
-
(1988)
Cell
, vol.55
, pp. 145-156
-
-
Kumar, V.1
Chambon, P.2
-
32
-
-
0023663885
-
Functional domains of the human estrogen receptor
-
Kumar, V., S. Green, G. Stack, M. Berry, J. R. Jin, and P. Chambon. 1987. Functional domains of the human estrogen receptor. Cell. 51:941-951.
-
(1987)
Cell
, vol.51
, pp. 941-951
-
-
Kumar, V.1
Green, S.2
Stack, G.3
Berry, M.4
Jin, J.R.5
Chambon, P.6
-
33
-
-
0025904209
-
Rigid protein motion as a model for crystallographic temperature factors
-
Kuriyan, J., and W. I. Weis. 1991. Rigid protein motion as a model for crystallographic temperature factors. Proc. Natl. Acad. Sci. USA. 88: 2773-2777.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 2773-2777
-
-
Kuriyan, J.1
Weis, W.I.2
-
34
-
-
0026557977
-
Evolution of the nuclear receptor gene superfamily
-
Laudet, V., C. Hänni, J. Coll, F. Catzeflis, and D. Stéhelin. 1992. Evolution of the nuclear receptor gene superfamily. EMBO J. 11:1003-1013.
-
(1992)
EMBO J.
, vol.11
, pp. 1003-1013
-
-
Laudet, V.1
Hänni, C.2
Coll, J.3
Catzeflis, F.4
Stéhelin, D.5
-
35
-
-
0024058085
-
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
-
Lavery, R., and H. Sklenar. 1988. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. & Dyn. 6:63-91.
-
(1988)
J. Biomol. Struct. & Dyn.
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Sklenar, H.2
-
36
-
-
0025906146
-
Contribution of the thermodynamics of protein folding from the reduction in water-accessible non-polar surface area
-
Livingstone, J. R., R. S. Spolar, and M. T. Record. 1988. Contribution of the thermodynamics of protein folding from the reduction in water-accessible non-polar surface area. Biochemistry. 30:4237-4244.
-
(1988)
Biochemistry
, vol.30
, pp. 4237-4244
-
-
Livingstone, J.R.1
Spolar, R.S.2
Record, M.T.3
-
37
-
-
0025780755
-
Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA
-
Luisi, B. F., W. X. Xu, Z. Otwinowski, L. P. Freedman, K. R. Yamamoto, and P. B. Sigler. 1991. Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA. Nature. 352:497-505.
-
(1991)
Nature
, vol.352
, pp. 497-505
-
-
Luisi, B.F.1
Xu, W.X.2
Otwinowski, Z.3
Freedman, L.P.4
Yamamoto, K.R.5
Sigler, P.B.6
-
38
-
-
0027241925
-
Thermodynamics of the glucocorticoid receptor-DNA interaction: Binding of wild-type GR DBD to different response elements
-
Lundbäck, T., C. Cairns, J. A. Gustafsson, J. Carlstedt-Duke, and T. Härd. 1993. Thermodynamics of the glucocorticoid receptor-DNA interaction: binding of wild-type GR DBD to different response elements. Biochem. J. 32:5074-5082.
-
(1993)
Biochem. J.
, vol.32
, pp. 5074-5082
-
-
Lundbäck, T.1
Cairns, C.2
Gustafsson, J.A.3
Carlstedt-Duke, J.4
Härd, T.5
-
39
-
-
0028225441
-
Thermodynamics of sequence-specific glucocorticoid receptor-DNA interactions
-
Lundbäck, T., J. Zilliacus, J. A. Gustafsson, J. Carlstedt-Duke, and T. Härd. 1994. Thermodynamics of sequence-specific glucocorticoid receptor-DNA interactions. Biochem. J. 33:5955-5965.
-
(1994)
Biochem. J.
, vol.33
, pp. 5955-5965
-
-
Lundbäck, T.1
Zilliacus, J.2
Gustafsson, J.A.3
Carlstedt-Duke, J.4
Härd, T.5
-
40
-
-
6344260593
-
An all-atom empirical energy function for the simulation of nucleic acids
-
MacKerell, Jr., A., J. Wiorkiewicz-Kuczera, and M. Karplus. 1995. An all-atom empirical energy function for the simulation of nucleic acids. J. Am. Chem. Soc. 117:11946-11975.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 11946-11975
-
-
MacKerell A., Jr.1
Wiorkiewicz-Kuczera, J.2
Karplus, M.3
-
41
-
-
0024600621
-
Three amino acids of the oestrogen receptor are essential to its ability to distinguish an oestrogen from a glucocorticoid-responsive element
-
Mader, S., V. Kumar, H. de Vemeuil, and P. Chambon. 1989. Three amino acids of the oestrogen receptor are essential to its ability to distinguish an oestrogen from a glucocorticoid-responsive element. Nature. 338: 271-274.
-
(1989)
Nature
, vol.338
, pp. 271-274
-
-
Mader, S.1
Kumar, V.2
De Vemeuil, H.3
Chambon, P.4
-
43
-
-
8344276781
-
NAMD - A parallel, object-oriented molecular dynamics program
-
Nelson, M., W. Humphrey, A. Gursoy, A. Dalke, L. Kalé, R. D. Skeel, and K. Schulten. 1996. NAMD - A parallel, object-oriented molecular dynamics program. J. Supercomput. App. 10:251-268.
-
(1996)
J. Supercomput. App.
, vol.10
, pp. 251-268
-
-
Nelson, M.1
Humphrey, W.2
Gursoy, A.3
Dalke, A.4
Kalé, L.5
Skeel, R.D.6
Schulten, K.7
-
45
-
-
0029562951
-
1 in solution: Correlation with NMR and x-ray data and insights into biological function
-
1 in solution: correlation with NMR and x-ray data and insights into biological function. J. Mol. Biol. 254:771-792.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 771-792
-
-
Philippopoulos, M.1
Lim, C.2
-
48
-
-
0029546720
-
A portable distributed implementation of the parallel multipole tree algorithm
-
In press. [Duke University Technical Report 95-002]
-
Rankin, W., and J. Board. 1995. A portable distributed implementation of the parallel multipole tree algorithm. IEEE Symposium on High Performance Distributed Computing. In press. [Duke University Technical Report 95-002].
-
(1995)
IEEE Symposium on High Performance Distributed Computing
-
-
Rankin, W.1
Board, J.2
-
49
-
-
0029044997
-
Structural determinants of nuclear receptor assembly on DNA direct repeats
-
Rastinejad, F., T. Perlmann, R. M. Evans, and P. Sigler. 1995. Structural determinants of nuclear receptor assembly on DNA direct repeats. Nature. 375:203-211.
-
(1995)
Nature
, vol.375
, pp. 203-211
-
-
Rastinejad, F.1
Perlmann, T.2
Evans, R.M.3
Sigler, P.4
-
50
-
-
0024556774
-
Conformational and helicoidal analysis of 30 psec of molecular dynamics on the d(CGCGAATTCGCG) double helix
-
Ravishanker, G., S. Swaminathan, D. L. Beveridge, R. Lavery, and H. Sklenar. 1989. Conformational and helicoidal analysis of 30 psec of molecular dynamics on the d(CGCGAATTCGCG) double helix. J. Biomol. Struct. & Dyn. 6:669-699.
-
(1989)
J. Biomol. Struct. & Dyn.
, vol.6
, pp. 669-699
-
-
Ravishanker, G.1
Swaminathan, S.2
Beveridge, D.L.3
Lavery, R.4
Sklenar, H.5
-
51
-
-
0027918646
-
R3: Structural differences between consensus and non-consensus half-sites
-
R3: structural differences between consensus and non-consensus half-sites. Structure. 1:221-240.
-
(1993)
Structure
, vol.1
, pp. 221-240
-
-
Rodgers, D.W.1
Harrison, S.C.2
-
52
-
-
0027138869
-
A systematic method for studying the spatial distribution of water molecules around nucleic acid bases
-
Schneider, B., D. M. Cohen, L. Schleifer, A. R. Srinivasan, W. Olson, and H. M. Berman. 1993. A systematic method for studying the spatial distribution of water molecules around nucleic acid bases. Biophys. J. 65:2291-2303.
-
(1993)
Biophys. J.
, vol.65
, pp. 2291-2303
-
-
Schneider, B.1
Cohen, D.M.2
Schleifer, L.3
Srinivasan, A.R.4
Olson, W.5
Berman, H.M.6
-
53
-
-
0027365669
-
The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: How receptors discriminate between their response elements
-
Schwabe, J. W. R., L. Chapman, J. T. Finch, and D. Rhodes. 1993a. The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: how receptors discriminate between their response elements. Cell. 75:567-578.
-
(1993)
Cell
, vol.75
, pp. 567-578
-
-
Schwabe, J.W.R.1
Chapman, L.2
Finch, J.T.3
Rhodes, D.4
-
54
-
-
0027141842
-
DNA recognition by the estrogen receptor: From solution to the crystal
-
Schwabe, J. W. R., L. C. Chapman, J. T. Finch, D. Rhodes, and D. Neuhaus. 1993b. DNA recognition by the estrogen receptor: from solution to the crystal. Structure. 15:187-204.
-
(1993)
Structure
, vol.15
, pp. 187-204
-
-
Schwabe, J.W.R.1
Chapman, L.C.2
Finch, J.T.3
Rhodes, D.4
Neuhaus, D.5
-
55
-
-
0029643958
-
The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation
-
Schwabe, J. W. R., L. C. Chapman, and D. Rhodes. 1995. The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation. Structure. 3:201-213.
-
(1995)
Structure
, vol.3
, pp. 201-213
-
-
Schwabe, J.W.R.1
Chapman, L.C.2
Rhodes, D.3
-
56
-
-
0025223160
-
Solution structure of the DNA-binding domain of the oestrogen receptor
-
Schwabe, J. W. R., D. Neuhaus, and D. Rhodes. 1990. Solution structure of the DNA-binding domain of the oestrogen receptor. Nature. 348: 458-461.
-
(1990)
Nature
, vol.348
, pp. 458-461
-
-
Schwabe, J.W.R.1
Neuhaus, D.2
Rhodes, D.3
-
57
-
-
0001555216
-
A molecular dynamics simulation of double-helical B-DNA including counterions and water
-
Seibel, G. L., U. C. Singh, and P. A. Kollman. 1985. A molecular dynamics simulation of double-helical B-DNA including counterions and water. Proc. Natl. Acad. Sci. USA. 82:6537-6540.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 6537-6540
-
-
Seibel, G.L.1
Singh, U.C.2
Kollman, P.A.3
-
58
-
-
0028315988
-
Determinants of repressor/operator recognition from the structure of the trp operator binding site
-
Shaked, Z., G. Guzikevich-Guerstein, F. Frolow, D. Rabinovich, A. Joachimiak, and P. B. Sigler. 1994. Determinants of repressor/operator recognition from the structure of the trp operator binding site. Nature. 368:469-473.
-
(1994)
Nature
, vol.368
, pp. 469-473
-
-
Shaked, Z.1
Guzikevich-Guerstein, G.2
Frolow, F.3
Rabinovich, D.4
Joachimiak, A.5
Sigler, P.B.6
-
60
-
-
0024821134
-
The definition of generalized helicoidal parameters and of axis of curvature for irregular nucleic acids
-
Sklenar, H., C. Etchebest, and R. Lavery. 1989. The definition of generalized helicoidal parameters and of axis of curvature for irregular nucleic acids. Proteins Struct. Funct. Genet. 6:46-60.
-
(1989)
Proteins Struct. Funct. Genet.
, vol.6
, pp. 46-60
-
-
Sklenar, H.1
Etchebest, C.2
Lavery, R.3
-
61
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar, R. S., and M. T. Record. 1994. Coupling of local folding to site-specific binding of proteins to DNA. Science. 263:777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record, M.T.2
-
62
-
-
0028773281
-
A framework for DNA-protein recognition code of the probe helix in transcription factors: The chemical and stereochemical rules
-
Suzuki, M. 1994. A framework for DNA-protein recognition code of the probe helix in transcription factors: the chemical and stereochemical rules. Structure. 2:317-326.
-
(1994)
Structure
, vol.2
, pp. 317-326
-
-
Suzuki, M.1
-
63
-
-
0024337858
-
Determinants of target gene specificity for steroid/thyroid hormone receptors
-
Umesono, K., and R. M. Evans. 1989. Determinants of target gene specificity for steroid/thyroid hormone receptors. Cell. 57:1139-1146.
-
(1989)
Cell
, vol.57
, pp. 1139-1146
-
-
Umesono, K.1
Evans, R.M.2
-
64
-
-
84990642018
-
The interaction of Na(I), Ca(II), and Mg(II) metal ions with duplex DNA: A theoretical modeling study
-
York, D. M., T. Darden, and D. Deerfield II. 1992. The interaction of Na(I), Ca(II), and Mg(II) metal ions with duplex DNA: a theoretical modeling study. Int. J. Quantum Chem. Symp. 19:145-166.
-
(1992)
Int. J. Quantum Chem. Symp.
, vol.19
, pp. 145-166
-
-
York, D.M.1
Darden, T.2
Deerfield D. II3
-
65
-
-
0028853067
-
Modulation of DNA-binding specificity within the nuclear receptor family by substitutions at a single amino acid position
-
Zilliacus, J., A. P. H. Wright, J. Carlstedt-Duke, L. Nilsson, and J. Gustaîsson. 1995. Modulation of DNA-binding specificity within the nuclear receptor family by substitutions at a single amino acid position. Proteins Struct. Funct. Genet. 21:57-67.
-
(1995)
Proteins Struct. Funct. Genet.
, vol.21
, pp. 57-67
-
-
Zilliacus, J.1
Wright, A.P.H.2
Carlstedt-Duke, J.3
Nilsson, L.4
Gustaîsson, J.5
|