Characterization of protein-DNA interactions using surface plasmon resonance spectroscopy with various assay schemes

Biochemistry

Volumn 46, Issue 8, 2007, Pages 2127-2135

  Teh, Huey Fang ^a   Peh, Wendy Y X ^a   Su, Xiaodi ^a   Thomsen, Jane S ^b  

^a INSTITUTE OF MATERIALS RESEARCH AND ENGINEERING   (Singapore)

^b GENOME INSTITUTE OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ASSAYS; DIMERS; DNA; STOICHIOMETRY; SURFACE PLASMON RESONANCE;

BIOLOGICAL PROCESSES; RECEPTORS; SPR ANALYSIS;

PROTEINS;

DNA; ESTROGEN RECEPTOR ALPHA; ESTROGEN RECEPTOR BETA; MUTANT PROTEIN; PROTEIN; PROTEIN PS2; RECEPTOR SUBTYPE; RECOMBINANT PROTEIN; VITELLOGENIN;

ARTICLE; ASSAY; BINDING AFFINITY; BINDING COMPETITION; DNA BINDING; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; SPECTROSCOPY; SURFACE PLASMON RESONANCE;

ANIMALS; BASE SEQUENCE; CHICKENS; DNA; DNA-BINDING PROTEINS; ESTROGEN RECEPTOR ALPHA; ESTROGEN RECEPTOR BETA; HUMANS; PROTEIN BINDING; RECOMBINANT PROTEINS; RESPONSE ELEMENTS; SPECTRUM ANALYSIS; SURFACE PLASMON RESONANCE;

EID: 33847668930     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi061903t     Document Type: Article

References (33)

1. Sladek, R., and Giguere, V. (1998) Initial characterization of new orphan receptor, in Nuclear Receptors: A Practical Approach (Picard, D., Ed.) pp 29-69, Oxford University Press, Oxford, U.K.
2. 32P radiometric assay, Anal. Chem. 78, 3326-3334.
3. Kanon, N., Kyo, M., Inamori, K., Ando, A., Asami, A., Nakao, A., and Osada, H. (2006) SPR imaging of photo-cross-linked small-molecule arrays on gold, Anal. Chem. 78, 2226-2230.
4. Homola, J. (2003) Present and future of surface plasmon resonance biosensors, Anal. Bioanal. Chem. 377, 528-539.
5. Karlsson, R. (2004) SPR for molecular interaction analysis: A review of emerging application areas J. Mol. Recognit. 17, 151-161.
6. Schubert, F., Zettl, H., Hafner, W., Krauss, G., and Krausch, G. (2003) Comparative thermodynamic analysis of DNA-protein interactions using surface plasmon resonance and fluorescence correlation spectroscopy, Biochemistry 42, 10288-10294.
7. Shumaker-Parry, J. S., Zareie, M. H., Aebersold, R., and Campbell, C. T. (2004) Microspotting streptavidin and double-stranded DNA arrays on gold for high-throughput studies of protein-DNA interactions by surface plasmon resonance microscopy, Anal. Chem. 76, 918-929.
8. Maillart, E., Brengel-Pesce, K., Capela, D., Roget, A., Livache, T., Canva, M., Levy, Y., and Soussi, T. (2004) Versatile analysis of multiple macromolecular interactions by SPR imaging: Application to p53 and DNA interaction, Oncogene 23, 5543-5550.
9. Smith, E. A., Erickson, M. G., Ulijasz, A. T., Weisblum, B., and Corn, R. M. (2003) Surface plasmon resonance imaging of transcription factor proteins: Interactions of bacterial response regulators with DNA arrays on gold films, Langmuir 19, 1486-1492.
10. Cheskis, B. J., Karathanasis, S., and Lyttle, C. R. (1997) Estrogen receptor ligands modulate its interaction with DNA, J. Biol. Chem. 272, 11384-11391.
11. Chen, J. Q., Eshete, M., Alworth, W. L., and Yager, J. D. (2004) Binding of MCF-7 cell mitochondrial proteins and recombinant human estrogen receptors α and β to human mitochondrial DNA estrogen response elements, J. Cell. Biochem. 93, 358-373.
12. Su, X., Lin, C. Y., O'Shea, S. J., Teh, H. F., Peh, W. Y. X., and Thomsen, S. J. (2006) Combinatorial application of surface plasmon resonance spectroscopy and quartz crystal microbalance for studying nuclear hormone receptor-response element interactions, Anal. Chem. 78, 5552-5558.
13. Su, X., Robelek, R., Wu, Y. J., Wang, G. Y., and Knoll, W. (2004) Detection of point mutation and insertion mutations in DNA using a quartz crystal microbalance and MutS, a mismatch binding protein, Anal. Chem. 76, 489-494.
14. Wegner, G. J., Lee, H. J., Marriott, G., and Corn, R. M. (2003) Fabrication of histidine-tagged fusion protein arrays for surface plasmon resonance imaging studies of protein-protein and protein-DNA interactions, Anal. Chem. 75, 4740-4746.
15. Lin, L., Harris, J. W., Thompson, G. R., and Brody, J. P. (2004) Surface plasmon resonace-based sensors to identify cis-regulatory elements, Anal. Chem. 76, 6555-6559.
16. Loven, M. A., Wood, J. R., and Nardulli, A. M. (2001) Interactions of estrogen receptors α and β with estrogen response elements, Mol. Cell. Endocrinol. 181, 151-163.
17. Yi, P., Driscoll, M. D., Huang, J., Bhahat, S., Hilf, R., Bambara, R. A., and Muyan, M. (2002) The effects of estrogen-responsive element- and ligand-induced structural changes on the recruitment of cofactors and transcriptional responses by ERα and ERβ, Mol. Endocrinol. 16, 674-693.
18. Crowther, J. R. (1995) ELISA Theory and Practice, pp 35-50, Humana Press, Totowa, NJ.
19. Muramatsu, M., and Inoue, S. (2000) Estrogen Receptors: How Do They Control Reproductive and Nonreproductive Functions? Biochem. Biophys. Res. Commun. 270, 1-10.
20. Melamed, M., Arnold, S. F., Notidess, A. C., and Sasson, S. (1996) Kinetic analysis of the interaction of human estrogen receptor with an estrogen response element, J. Steroid Biochem. Mol. Biol. 57, 153-159.
21. Hyder, S. M., Chiappeta, C., and Stancel, G. M. (1999) Interaction of human estrogen receptors α and β with the same naturally occurring estrogen response elements, Biochem. Pharmacol. 57, 597-601.
22. Asano, K., Ono, A., Hashimoto, S., Inoue, T., and Kanno, J. (2004) Screening of endocrine disrupting chemicals using a surface plasmon resonance sensor, Anal. Sci. 20, 611-616.
23. Klein-Hitpass, L., Ryffel, G. U., Heitlinger, E., and Cato, A. B. C. (1998) A 13 bp palindrome is a functional estrogen responsive element and interacts specifically with estrogen receptor, Nucleic Acids Res. 16, 647-663.
24. Bourdeau, V., Deschênes, J., Métivier, R., Nagai, Y., Nguyen, D., Bretschneider, N., Gannon, F., White, J. H., and Mader, S. (2004) Genome-wide identification of high-affinity estrogen response elements in human and mouse, Mol. Endocrinol. 18, 1411-1427.
25. Nunez, A. M., Jakowlev, S., Briand, J. P., Garie, M., Krust, A., Rio, M. C., and Chambon, P. (1987) Characterization of the estrogen-induced pS2 protein secreted by the human breast cancer cell line MCF-7, Endocrinology 121, 1759-1765.
26. Su, X. D., Wu, Y. J., Robelek, R., and Knoll, W. (2005) Surface plasmon resonance spectroscopy and quartz crystal microbalance study of streptavidin film structure effects on biotinylated DNA assembly and target DNA hybridization, Langmir 21, 348-353.
27. Knoll, W., Zizlsperger, M., Liebermann, T., Arnold, S., Badia, A., Liley, M., Piscevic, D., Schmitt, F.-J., and Spinke, J. (2000) Streptavidin array as supramolecular architectures in surface plasmon optical sensor formats, Colloids Surf., A 161, 115-137.
28. Mosselman, S., Polman, J., and Dijkema, R. (1996) ERβ: Identification and characterization of a novel human estrogen receptor, FEBS Lett. 392, 49-53.
29. Escande, A., Pillon, A., Servant, N., Cravedi, J., Larrea, F., Muhn, P., Nicolas, J., Cavaillès, V., and Balaguer, P. (2006) Evaluation of ligand selectivity using reporter cell lines stably expressing estrogen receptor α or β, Biochem. Pharmacol. 71, 1459-1469.
30. Boyer, M., Poujol, N., Margeat, E., and Royer, C. A. (2000) Quantitative characterization of the interaction between purified human estrogen receptor α and DNA using fluorescence anisotropy, Nucleic Acids Res. 28, 2494-2502.
31. Margeat, E., Bourdoncle, A., Maegueron, R., Poujol, N., Cavailles, V., and Royer, C. (2003) Ligands differentially modulate the protein interactions of the human estrogen receptors α and β, J. Mol. Biol. 326, 77-92.
32. Pettersson, K., Grandien, K., Kuiper, G. G. J. M., and Gustafsson, J. (1997) Mouse estrogen receptor β forms estrogen response element binding heterodimers with estrogen receptor α, Mol. Endocrinol. 11, 1486-1496.
33. Cowley, S. M., Hoare, S., Mosselman, S., and Parker, M. G. (1997) Estrogen receptors α and β form heterodimers on DNA, J. Biol. Chem. 272, 19858-19862.