Purification and characterization of an iron-containing alcohol dehydrogenase in extremely thermophilic bacterium Thermotoga hypogea

Archives of Microbiology

Volumn 187, Issue 6, 2007, Pages 499-510

  Ying, Xiangxian ^a   Wang, Ying ^a,b   Badiei, Hamid R ^a   Karanassios, Vassili ^a   Ma, Kesen ^a  

^a UNIVERSITY OF WATERLOO   (Canada)

^b XINJIANG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Alcohol dehydrogenase; Anaerobe; Extreme thermophile; Iron; Thermostability; Thermotoga hypogea

Indexed keywords

ACETALDEHYDE; ALCOHOL DEHYDROGENASE; ALDEHYDE; BUTYRALDEHYDE; HOMODIMER; IRON DERIVATIVE; OXYGEN;

ALCOHOL OXIDATION; ALCOHOL PRODUCTION; ARTICLE; ATOM; CATALYSIS; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME PURIFICATION; ENZYME SPECIFICITY; ENZYME SUBSTRATE; FRACTIONATION; HALF LIFE TIME; MOLECULAR WEIGHT; NONHUMAN; PH MEASUREMENT; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; TEMPERATURE ACCLIMATIZATION; THERMOSTABILITY; THERMOTOGA; THERMOTOGA HYPOGEA;

ALCOHOL DEHYDROGENASE; AMINO ACID SEQUENCE; ENZYME STABILITY; GENE EXPRESSION REGULATION, BACTERIAL; GRAM-NEGATIVE ANAEROBIC BACTERIA; HEAT; HYDROGEN-ION CONCENTRATION; IRON; KINETICS; MOLECULAR SEQUENCE DATA; OXYGEN; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); THERMOTOGA HYPOGEA;

EID: 34249041759     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-007-0217-x     Document Type: Article

References (50)

1. Antoine E, Rolland JL, Raffin JP, Dietrich J (1999) Cloning and over-expression in Escherichia coli of the gene encoding NADPH group III alcohol dehydrogenase from Thermococcus hydrothermomalis. Eur J Biochem 264:880-889
2. Badiei HR, Smith AT, Karanassios V (2002) Rhenium-cup, in-torch vaporization (ITV) sample introduction for axially viewed ICP-AES and its application to the analysis of a microscopic, ng-weight solid sample. J Anal At Spectrom 17:1030-1036
3. Balk M, Weijma J, Stams AJM (2002) Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor. Int J Syst Evol Microbiol 52:1361-1368
4. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
5. Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guba C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Taylor SS, Hodgson KO, Wooley J, Wilson IA (2002) Crystal structure of a zinc-containing glycerol dehydrogenase (TM0423) from Thermotoga maritima at 1.5 Å resolution. Proteins 50:371-374
6. Copeland A, Lucas S, Lapidus A, Barry K, Glavina del Rio T, Dalin E, Tice H, Bruce D, Pitluck S, Richardson P (2006a) Sequencing of the draft genome and assembly of Fervidobacterium nodosum Rt17-B1. US DOE Joint Genome Institute (JGI-PGF). http://www.genome.jgi-psf.org/draft_microbes/ferno/ferno.home.html accessed on 29 December, 2006
7. Copeland A, Lucas S, Lapidus A, Barry K, Glavina del Rio T, Dalin E, Tice H, Bruce D, Pitluck S, Richardson P (2006b) Sequencing of the draft genome and assembly of Thermotoga petrophila RKU-1. US DOE Joint Genome Institute (JGI-PGF). http://www.genome.jgi-psf.org/draft_microbes/thepr/thepr.home.html accessed on 29 December, 2006
8. Copeland A, Lucas S, Lapidus A, Barry K, Glavina del Rio T, Dalin E, Tice H, Bruce D, Pitluck S, Richardson P (2006c) Sequencing of the draft genome and assembly of Thermoanaerobacter ethanolicus X514. US DOE Joint Genome Institute (JGI-PGF). http://www.genome.jgi-psf.org/draft_microbes/theex/theex.home.html accessed on 29 December, 2006
9. Deutscher MP (1990) Guide to protein purification. Methods Enzymol 182:588-604
10. Esposito L, Sica F, Raia CA, Giordano A, Rossi M, Mazzarella L, Zagari A (2002) Crystal structure of the alcohol dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus at 1.85 Å resolution. J Mol Biol 318:463-477
11. Fardeau ML, Ollivier B, Patel BKC, Magot M, Thomas P, Rimbault A, Rocchiccioli F, Garcia JL (1997) Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well. Int J Syst Bacteriol 47:1013-1019
12. Guagliardi A, Martino M, Iaccarino I, Rosa MD, Rossi M, Bartolucci S (1996) Purification and characterization of the alcohol dehydrogenase from a novel strain of Bacillus stearothermophilus growing at 70°C. Int J Biochem Cell Biol 28:239-246
13. Guy JE, Isupov MN, Littlechild JA (2003) The structure of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix. J Mol Biol 331:1041-1051
14. Hirakawa H, Kamiya N, Kawarabayashi Y, Nagamune T (2004) Properties of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix K1. J Biosci Bioeng 97:202-206
15. Ingram LO, Aldrich HC, Borges ACC, Causey TB, Martinez A, Morales F, Saleh A, Underwood SA, Yomano LP, York SW, Zaldivar J, Zhou S (1999) Enteric bacterial catalysts for fuel ethanol production. Biotechnol Prog 15:855-866
16. Jochimsen B, Peinemann-Simon S, Völker H, Stüben D, Botz R, Stoffers P, Dando PR, Thomm M (1997) Stetteria hydrogenophila, gen. nov. and sp. nov., a novel mixotrophic sulfur-dependent crenarchaeote isolated from Milos, Greece. Extremophiles 1:67-73
17. Kelly RM, Adams MWW (1994) Metabolism in hyperthermophilic microorganisms. Antonie Van Leeuwenhoek 66:247-270
18. Kengen SWM, de Bok FAM, van Loo ND, Dijkema C, Stams AJM, de Vos WM (1994) Evidence for the operation of a novel Embden-Meyerhof pathway that involves ADP-dependent kinases during sugar fermentation by Pyrococcus furiosus. J Biol Chem 269:17537-17541
19. Kort R, Liebl W, Labedan B, Forterre P, Eggen RIL, de Vos WM (1997) Glutamate dehydrogenase from hyperthermophilic bacterium Thermotoga maritima: molecular characterization and phylogenetic implications. Extremophiles 1:52-60
20. Laemmli UK (1970) Cleavage of structural proteins during assembly of the head of bacteriophage T4. Nature 227:680-685
21. Littlechild JA, Guy JE, Isupov MN (2004) Hyperthermophilic dehydrogenase enzymes. Biochem Soc Trans 32:255-258
22. Ma K, Adams MWW (1999) An unusual oxygen-sensitive, iron- and zinc-containing alcohol dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus. J Bacteriol 181:1163-1170
23. Ma K, Robb FT, Adams MWW (1994) Purification and characterization of NADP-specific alcohol dehydrogenase and glutamate dehydrogenase from the hyperthermophilic archaeon Thermococcus litoralis. Appl Environ Microbiol 60:562-568
24. Ma K, Loessner H, Heider J, Johnson MK, Adams MWW (1995) Effects of elemental sulfur on the metabolism of the deep-sea hyperthermophilic archaeon Thermococcus strain ES-1: characterization of a sulfur-regulated, non-heme iron alcohol dehydrogenase. J Bacteriol 177:4748-4756
25. Ma K, Hutchins A, Sung SJS, Adams MWW (1997) Pyruvate ferrodoxin oxidoreductase from the hyperthermophilic archaeon, Pyrococcus furiosus, functions as a CoA-dependent pyruvate decarboxylase. Proc Natl Acad Sci 94:9608-9613
26. Nelson KE, Clayton R, Gill SR, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson J, Nelson WC, Ketchum KA, McDonald L, Utterback TR, Malek JA, Linher KD, Garrett MM, Stewart AM, Cotton MD, Pratt MS, Phillips CA, Richardson D, Heidelberg J, Sutton GG, Fleischmann RD, White O, Salzberg SL, Smith HO, Venter JC, Fraser CM (1999) Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399:323-329
27. van der Oost J, Voorhorst WGB, Kengen SWM, Geerling ACM, Wittenhorst V, Gueguen Y, de Vos WM (2001) Genetic and biochemical characterization of a short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus. Eur J Biochem 268:3062-3068
28. Pan N, Imlay JA (2001) How does oxygen inhibit central metabolism in the obligate anaerobe Bacteroides thetaiotaomicron? Mol Microbiol 39:1562-1571
29. Patel BKC, Morgan HW, Daniel RM (1985) Fervidobacterium nodosum gen. nov. and spec. nov. a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch Microbiol 141:63-69
30. Radianingtyas H, Wright PC (2003) Alcohol dehydrogenases from thermophilic and hyperthermophilic archaea and bacteria. FEMS Microbiol Rev 794:1-24
31. Reid MF, Fewson CA (1994) Molecular characterization of microbial alcohol dehydrogenases. Crit Rev Microbiol 20:13-56
32. +-dependent alcohol dehydrogenase: purification and properties. Eur J Biochem 167:475-479
33. Robb FT, Maeder DL (1998) Novel evolutionary histories and adaptive features of proteins from hyperthermophiles. Curr Opin Biotech 9:288-291
34. Robb FT, Park JB, Adams MWW (1992) Characterization of an extremely thermostable glutamate dehydrogenase: a key enzyme in the primary metabolism of the hyperthermophilic archaebacterium, Pyrococcus furiosus. Biochim Biophys Acta 1120:267-272
35. Robb FT, Maeder DL, DiRuggiero J, Borges KM, Tolliday N (2001) Glutamate dehydrogenases from hyperthermophiles. In: Adams MWW, Kelly RM (eds) Methods in enzymology, vol 331. Academic, New York, pp 26-41
36. Sakuraba H, Goda S, Ohshima T (2004) Unique sugar metabolism and novel enzymes of hyperthermophilic archaea. Chem Rec 3:281-287
37. Schönheit P, Schäfer T (1995) Metabolism of hyperthermophiles. World J Microbiol Biotechnol 11:26-57
38. Schwarzenbacher R, von Delft F, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guba C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JE, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA (2004) Crystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 Å resolution. Proteins 54:174-177
39. Scopes PK (1983) An iron-activated alcohol dehydrogenase. FEBS Lett 156:303-306
40. Selig M, Xavier KB, Santos H, Schönheit P (1997) Comparative analysis of Embden-Meyerhof and Entner-Doudoroff glycolytic pathways in hyperthermophilic archaea and the bacterium Thermotoga. Arch Microbiol 167:217-232
41. Sheehan JJ (1994) Bioconversion for production of renewable transportation fuels in the United States: a strategic perspective. In: Himmel ME, Baker JO, Overend RP (eds) Enzymatic conversion of biomass for fuels production, ACS symposium series 566. American Chemical Society, Washington DC, pp 1-53
42. Siebers B, Schönheit P (2005) Unusual pathways and enzymes of central carbohydrate metabolism in archaea. Curr Opin Microbiol 8:695-705
43. Stetter KO (1989) Extremely thermophilic chemolithoautotrophic archaebacteria. In: Schlegel HG, Bowien B (eds) Autotrophic bacteria, Science Tech Publishers/Springer, Madison/Berlin, pp 167-176
44. Stetter KO (1996) Hyperthermophilic prokaryotes. FEMS Microbiol Rev 18:149-158
45. Ueda K, Yamashita A, Ishikawa J, Shimada M, Watsuji TO, Morimura K, Ikeda H, Hattori M, Beppu T (2004) Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalisms. Nucleic Acids Res 32:4937-4944
46. de Vos WM, Kengen SWM, Voorhorst WGB, van der Oost J (1998) Sugar utilization and its control in hyperthermophile. Extremophiles 2:201-205
47. Verhees CH, Kengen SW, Tuininga JE, Schut GJ, Adams MW, de Vos WM, van der Oost J (2003) The unique features of glycolytic pathways in archaea. Biochem J 375:231-246
48. Wiegel J, Ljungdahl LG (1981) Thermoanaerobacter ethanolicus gen. nov., spec. nov., a new, extremely thermophilic, anaerobic bacterium. Arch Microbiol 128:343-348
49. Yang X, Ma K (2005) Purification and characterization of an NADH oxidase from extremely thermophilic anaerobic bacterium Thermotoga hypogea. Arch Microbiol 183:331-337
50. Ziegenhorn J, Senn M, Bücher T (1976) Molar absorptivities of β-NADH and β-NADPH. Clin Chem 22(2):151-160