Crystal structure of a zinc-containing glycerol dehydrogenase (TM0423) from Thermotoga maritima at 1.5 Å resolution

Proteins: Structure, Function and Genetics

Volumn 50, Issue 2, 2003, Pages 371-374

  Brinen, Linda S ^a   Canaves, Jaume M ^c   Dai, Xiaoping ^e   Deacon, Ashley M ^a   Elsliger, Marc A ^e   Eshaghi, Said ^b   Floyd, Ross ^a   Godzik, Adam ^c   Grittini, Carina ^e   Grzechnik, Slawomir K ^c   Guda, Chittibabu ^c   Jaroszewski, Lukasz ^c   Karlak, Cathy ^e   Klock, Heath E ^b   Koesema, Eric ^b   Kovarik, John S ^a   Kreusch, Andreas ^b   Kuhn, Peter ^a   Lesley, Scott A ^b   McMullan, Daniel ^b   McPhillips, Timothy M ^a   Miller, Mark A ^c   Miller, Mitchell D ^a   Morse, Andrew ^c   Moy, Kin ^e   Ouyang, Jie ^c   Robb, Alyssa ^b   Rodrigues, Kevin ^b   Selby, Thomas L ^e   Spraggon, Glen ^b   Stevens, Raymond C ^e   Van den Bedem, Henry ^a   Velasquez, Jeff ^e   Vincent, Juli ^b   Wang, Xianhong ^c   West, Bill ^c   Wolf, Guenter ^a   Taylor, Susan S ^d   Hodgson, Keith O ^a   Wooley, John ^c,d   Wilson, Ian A ^e   more..

^a SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^b Genomics Inst of Novartis Found   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; GLYCEROL DEHYDROGENASE; ZINC;

ARTICLE; COMPARATIVE STUDY; CRYSTAL STRUCTURE; ENZYME ANALYSIS; ENZYME STABILITY; ENZYME STRUCTURE; GEOBACILLUS STEAROTHERMOPHILUS; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY; THERMOTOGA MARITIMA;

BINDING SITES; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; SUGAR ALCOHOL DEHYDROGENASES; THERMOTOGA MARITIMA; ZINC;

BACTERIA (MICROORGANISMS); GEOBACILLUS STEAROTHERMOPHILUS; THERMOTOGA; THERMOTOGA MARITIMA;

EID: 0037297578     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10302     Document Type: Article

References (12)

1. Lesley SA, Kuhn P, Godzik A, Deacon, AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Wooley J, Taylor SS, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A 2002;99:11664-116569.
2. Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK: A program to check the stereochemical quality of protein structures. J Appl Crystallogr 1993;26:283-291.
3. Holm L, Sander C. Dali: A network tool for protein structure comparison. Trends Biochem Sci 1995;20:478-480.
4. Ruzheinikov SN, Burke J, Sedelnikova S, Baker PJ, Taylor R, Bullough PA, Muir, NM, Gore MG, Rice DW. Glycerol dehydrogenase: Structure, specificity, and mechanism of a family III popyol dehydrogenase. Structure 2001;9:789-802.
5. Burke J, Ruzheinikov SN, Sedelnikova S, Baker PJ, Holmes D, Muir NM, Gore MG, Rice DW. Purification, crystallization and quaternary structure analysis of a glycerol dehydrogenase S305 mutant from Bacillus stearothermophilus. Acta Crystallogr 2001; D57:165-167.
6. Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: A structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
7. Leslie AGW. Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography; 1992. p 26.
8. Collaborative Computational Project No. 4. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr 1994;D50:760-763.
9. Weeks CM, Miller R. The design and implementation of SnB v2.0. J Appl Crystallogr 1999;32:120-124.
10. Terwilliger TC, Berendzen J. Automated structure solution for MIR and MAD. Acta Crystallogr 1999;D55:849-861.
11. Perrakis A, Morris RM, Lamzin VS. Automated protein model building combined with iterative structure refinement. Nat Struct Biol 1999;6:458-463.
12. Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang J-S, Kuszewski J, Nilges N, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Crystallography and NMR system (CNS): A new software system for macromolecular structure determination. Acta Crystallogr 1998;D54:905-921.