메뉴 건너뛰기




Volumn 23, Issue 7, 2007, Pages 785-788

Large scale genotype-phenotype correlation analysis based on phylogenetic trees

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; BACILLUS ANTHRACIS; GENE MUTATION; GENOTYPE; GENOTYPE PHENOTYPE CORRELATION; INBRED STRAIN; INFECTION RESISTANCE; MATHEMATICAL ANALYSIS; MOUSE; NONHUMAN; PENETRANCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SCORING SYSTEM; SINGLE NUCLEOTIDE POLYMORPHISM; ALGORITHM; CHROMOSOME MAP; COMPARATIVE STUDY; COMPUTER PROGRAM; EVALUATION; GENETIC VARIABILITY; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; STATISTICS;

EID: 34248530417     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm003     Document Type: Article
Times cited : (17)

References (37)
  • 1
    • 0042964832 scopus 로고    scopus 로고
    • Impairment of dendritic cells and adaptive immunity by anthrax lethal toxin
    • Agrawal,A. et al. (2003) Impairment of dendritic cells and adaptive immunity by anthrax lethal toxin. Nature, 424, 329-334.
    • (2003) Nature , vol.424 , pp. 329-334
    • Agrawal, A.1
  • 2
    • 0034758045 scopus 로고    scopus 로고
    • Genomewide scans of complex human diseases: True linkage is hard to find
    • Altmüeller,J. et al. (2001) Genomewide scans of complex human diseases: True linkage is hard to find. Am. J. Hum. Genet., 69 936-950.
    • (2001) Am. J. Hum. Genet , vol.69 , pp. 936-950
    • Altmüeller, J.1
  • 3
    • 12844271628 scopus 로고    scopus 로고
    • Murine macrophage transcriptional responses to Bacillus anthracis infection and intoxication
    • Bergman,N.H. et al. (2005) Murine macrophage transcriptional responses to Bacillus anthracis infection and intoxication. Infect. Immun., 73, 1069-1080.
    • (2005) Infect. Immun , vol.73 , pp. 1069-1080
    • Bergman, N.H.1
  • 4
    • 31744441475 scopus 로고    scopus 로고
    • Nalp1b controls mouse macrophage susceptibility to anthrax lethal toxin
    • Boyden,E.D. and Dietrich,W.F. (2006) Nalp1b controls mouse macrophage susceptibility to anthrax lethal toxin. Nat. Genet., 38, 240-244.
    • (2006) Nat. Genet , vol.38 , pp. 240-244
    • Boyden, E.D.1    Dietrich, W.F.2
  • 5
    • 0001115709 scopus 로고
    • Binary (presence-absence) similarity coefficients
    • Cheetham,A.H. and Hazel,J.E. (1969) Binary (presence-absence) similarity coefficients. J. Paleontol., 43, 1130-1136.
    • (1969) J. Paleontol , vol.43 , pp. 1130-1136
    • Cheetham, A.H.1    Hazel, J.E.2
  • 6
    • 0043130555 scopus 로고    scopus 로고
    • On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: A simulation study
    • Comeron,J.M. et al. (2003) On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: A simulation study. Pacific Symp. Biocomput., 8, 478-489.
    • (2003) Pacific Symp. Biocomput , vol.8 , pp. 478-489
    • Comeron, J.M.1
  • 7
    • 29644437161 scopus 로고    scopus 로고
    • Roles of macrophages and neutrophils in the early host response to Bacillus anthracis spores in a mouse model of infection
    • Cote,C.K. et al. (2006) Roles of macrophages and neutrophils in the early host response to Bacillus anthracis spores in a mouse model of infection. Infect. Immun., 74, 469-480.
    • (2006) Infect. Immun , vol.74 , pp. 469-480
    • Cote, C.K.1
  • 8
    • 34447316626 scopus 로고    scopus 로고
    • Dietrich,W.F. (2006) Bacillus anthracis lethal factor susceptibility and identification of a gene, kif1C, mediating resistance. MPD: 702. Mouse Phenome Database Web Site, The Jackson Laboratory, Bar Harbor, Maine, USA. http://www.jax.org/phenome.
    • Dietrich,W.F. (2006) Bacillus anthracis lethal factor susceptibility and identification of a gene, kif1C, mediating resistance. MPD: 702. Mouse Phenome Database Web Site, The Jackson Laboratory, Bar Harbor, Maine, USA. http://www.jax.org/phenome.
  • 9
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein,J. (1985) Phylogenies and the comparative method. Am. Nat., 125, 1-15.
    • (1985) Am. Nat , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 10
    • 4444329913 scopus 로고    scopus 로고
    • Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6Mb of mouse genome
    • Frazer,K.A. et al. (2004) Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6Mb of mouse genome. Genome Res., 14, 1493-1500.
    • (2004) Genome Res , vol.14 , pp. 1493-1500
    • Frazer, K.A.1
  • 12
    • 8844276721 scopus 로고    scopus 로고
    • A collaborative database of inbred mouse strain characteristics
    • Grubb,S.C. et al. (2004) A collaborative database of inbred mouse strain characteristics. Bioinformatics, 20, 2857-2859.
    • (2004) Bioinformatics , vol.20 , pp. 2857-2859
    • Grubb, S.C.1
  • 13
    • 0035827344 scopus 로고    scopus 로고
    • In silico mapping of complex disease-related traits in mice
    • Grupe,A. et al. (2001) In silico mapping of complex disease-related traits in mice. Science, 292, 1915-1918.
    • (2001) Science , vol.292 , pp. 1915-1918
    • Grupe, A.1
  • 14
    • 19344363916 scopus 로고    scopus 로고
    • HIV-1 nef binds the DOCK2ELMO1 complex to activate rac and inhibit lymphocyte chemotaxis
    • Janardhan,A. et al. (2004) HIV-1 nef binds the DOCK2ELMO1 complex to activate rac and inhibit lymphocyte chemotaxis. PLoS Biol., 2, 65-76.
    • (2004) PLoS Biol , vol.2 , pp. 65-76
    • Janardhan, A.1
  • 15
    • 33744465239 scopus 로고    scopus 로고
    • An XML-based system for synthesis of data from disparate databases
    • Kurc,T.M. et al. (2006) An XML-based system for synthesis of data from disparate databases. J. Am. Med. Inform. Assoc., 13, 289-301.
    • (2006) J. Am. Med. Inform. Assoc , vol.13 , pp. 289-301
    • Kurc, T.M.1
  • 18
    • 0000989477 scopus 로고
    • A method for testing the correlated evolution of two binary characters: Are gains or losses concentrated on certain branches of a phylogenetic tree?
    • Maddison,W.P. (1990) A method for testing the correlated evolution of two binary characters: Are gains or losses concentrated on certain branches of a phylogenetic tree? Evolution, 44, 539-557.
    • (1990) Evolution , vol.44 , pp. 539-557
    • Maddison, W.P.1
  • 19
    • 0142244218 scopus 로고    scopus 로고
    • Susceptibility to anthrax lethal toxin is controlled by three linked quantitative trait loci
    • McAllister,R.D. et al. (2003) Susceptibility to anthrax lethal toxin is controlled by three linked quantitative trait loci. Am. J. Pathol., 163, 1735-1741.
    • (2003) Am. J. Pathol , vol.163 , pp. 1735-1741
    • McAllister, R.D.1
  • 20
    • 85047692288 scopus 로고    scopus 로고
    • Bacillus anthracis lethal toxin induces TNF-alpha-independent hypoxia-mediated toxicity in mice
    • Moayeri,M. et al. (2003) Bacillus anthracis lethal toxin induces TNF-alpha-independent hypoxia-mediated toxicity in mice. J. Clin. Invest., 112, 670-682.
    • (2003) J. Clin. Invest , vol.112 , pp. 670-682
    • Moayeri, M.1
  • 21
    • 3342965783 scopus 로고    scopus 로고
    • Mouse susceptibility to anthrax lethal toxin is influenced by genetic factors in addition to those controlling macrophage sensitivity
    • Moayeri,M. et al. (2004) Mouse susceptibility to anthrax lethal toxin is influenced by genetic factors in addition to those controlling macrophage sensitivity. Infect. Immun., 72, 4439-4447.
    • (2004) Infect. Immun , vol.72 , pp. 4439-4447
    • Moayeri, M.1
  • 22
    • 4644269525 scopus 로고    scopus 로고
    • Influence of interleukin 12B (IL12B) polymorphisms on spontaneous and treatment-induced recovery from hepatitis C virus infection
    • Mueller,T. et al. (2004) Influence of interleukin 12B (IL12B) polymorphisms on spontaneous and treatment-induced recovery from hepatitis C virus infection. J. Hepatol., 41, 652-658.
    • (2004) J. Hepatol , vol.41 , pp. 652-658
    • Mueller, T.1
  • 23
  • 24
    • 33645067624 scopus 로고    scopus 로고
    • Large-scale sequence analysis of avian influenza isolates
    • Obenauer,J.C. et al. (2006) Large-scale sequence analysis of avian influenza isolates. Science, 311, 1576-1580.
    • (2006) Science , vol.311 , pp. 1576-1580
    • Obenauer, J.C.1
  • 25
    • 0028097770 scopus 로고
    • Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters
    • Pagel,M. (1994) Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters. R. Soc. Lond. Proc. Series B, 255, 37-45.
    • (1994) R. Soc. Lond. Proc. Series B , vol.255 , pp. 37-45
    • Pagel, M.1
  • 26
    • 20044394908 scopus 로고    scopus 로고
    • Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse
    • Pletcher,M.T. et al. (2004) Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse. PLoS Biol., 2, 2159-2169.
    • (2004) PLoS Biol , vol.2 , pp. 2159-2169
    • Pletcher, M.T.1
  • 27
    • 0037063335 scopus 로고    scopus 로고
    • Effect of Bacillus anthracis lethal toxin on human peripheral blood mononuclear cells
    • Popov,S.G. et al. (2002) Effect of Bacillus anthracis lethal toxin on human peripheral blood mononuclear cells. FEBS Lett., 527.
    • (2002) FEBS Lett , vol.527
    • Popov, S.G.1
  • 28
    • 10744225296 scopus 로고    scopus 로고
    • Systemic cytokine response in murine anthrax
    • Popov,S.G. et al. (2004) Systemic cytokine response in murine anthrax. Cell Microbiol., 6, 225-233.
    • (2004) Cell Microbiol , vol.6 , pp. 225-233
    • Popov, S.G.1
  • 29
    • 0034979957 scopus 로고    scopus 로고
    • Impaired interferon gamma-mediated immunity and susceptibility to mycobacterial infection in childhood
    • Remus,N. et al. (2001) Impaired interferon gamma-mediated immunity and susceptibility to mycobacterial infection in childhood. Pediatr. Res., 50, 8-13.
    • (2001) Pediatr. Res , vol.50 , pp. 8-13
    • Remus, N.1
  • 30
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch,N. and Merikangas,K. (1996) The future of genetic studies of complex human diseases. Science, 273, 1516-1517.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 32
    • 0037028155 scopus 로고    scopus 로고
    • The mosaic structure of variation in the laboratory mouse genome
    • Wade,C.M. et al. (2002) The mosaic structure of variation in the laboratory mouse genome. Nature, 420, 574-578.
    • (2002) Nature , vol.420 , pp. 574-578
    • Wade, C.M.1
  • 33
    • 0035797887 scopus 로고    scopus 로고
    • Kif1C and a kinesin-like motor protein and mediates mouse macrophage resistance to anthrax lethal factor
    • Watters,J.M. et al. (2001) Kif1C and a kinesin-like motor protein and mediates mouse macrophage resistance to anthrax lethal factor. Curr. Biol., 11, 1503-1511.
    • (2001) Curr. Biol , vol.11 , pp. 1503-1511
    • Watters, J.M.1
  • 34
    • 0022599644 scopus 로고
    • Differences in susceptibility of inbred mice to Bacillus anthracis
    • Welkos,S.L. et al. (1986) Differences in susceptibility of inbred mice to Bacillus anthracis. Infect. Immun., 51, 795-800.
    • (1986) Infect. Immun , vol.51 , pp. 795-800
    • Welkos, S.L.1
  • 35
    • 34447316932 scopus 로고    scopus 로고
    • Wheeler,W.C. et al, 2005, POY version 3.0, Documentation by Daniel Janies and Ward Wheeler. Commandline documentation by J. De Laet and W. C. Wheeler. Technical Report
    • Wheeler,W.C. et al. (2005). POY version 3.0, Documentation by Daniel Janies and Ward Wheeler. Commandline documentation by J. De Laet and W. C. Wheeler. Technical Report.
  • 36
    • 0037452982 scopus 로고    scopus 로고
    • Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse
    • Wiltshire,T. et al. (2003) Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. PNAS, 100, 3380-3385.
    • (2003) PNAS , vol.100 , pp. 3380-3385
    • Wiltshire, T.1
  • 37
    • 0036560003 scopus 로고    scopus 로고
    • Polymorphisms in the Il12b gene affect structure and expression of IL-12 in NOD and other autoimmune-prone mouse strains
    • Ymer,S.I. et al. (2002) Polymorphisms in the Il12b gene affect structure and expression of IL-12 in NOD and other autoimmune-prone mouse strains. Genes and Immun., 3, 151-157.
    • (2002) Genes and Immun , vol.3 , pp. 151-157
    • Ymer, S.I.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.