-
1
-
-
33644520519
-
The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide
-
1347507 16381880 10.1093/nar/gkj145 Database
-
Liolios K Tavernarakis N Hugenholtz P Kyrpides NC The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide Nucleic Acids Res 2006 34 Database D332-334 1347507 16381880 10.1093/nar/gkj145
-
(2006)
Nucleic Acids Res
-
-
Liolios, K.1
Tavernarakis, N.2
Hugenholtz, P.3
Kyrpides, N.C.4
-
2
-
-
0036175276
-
The past, present and future of genome-wide re-annotation
-
COMMENT2001 139008 11864365 10.1186/gb-2002-3-2-comment2001
-
Ouzounis CA Karp PD The past, present and future of genome-wide re-annotation Genome Biol 2002 3 2 COMMENT2001 139008 11864365 10.1186/ gb-2002-3-2-comment2001
-
(2002)
Genome Biol
, vol.3
, Issue.2
-
-
Ouzounis, C.A.1
Karp, P.D.2
-
3
-
-
0035408587
-
Genome annotation: From sequence to biology
-
10.1038/35080529 11433356
-
Stein L Genome annotation: From sequence to biology Nat Rev Genet 2001 2 7 493-503 10.1038/35080529 11433356
-
(2001)
Nat Rev Genet
, vol.2
, pp. 493-503
-
-
Stein, L.1
-
5
-
-
0037248869
-
PRINTS and its automatic supplement, prePRINTS
-
165477 12520033 10.1093/nar/gkg030
-
Attwood TK Bradley P Flower DR Gaulton A Maudling N Mitchell AL Moulton G Nordle A Paine K Taylor P PRINTS and its automatic supplement, prePRINTS Nucleic Acids Res 2003 31 1 400-402 165477 12520033 10.1093/ nar/gkg030
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 400-402
-
-
Attwood, T.K.1
Bradley, P.2
Flower, D.R.3
Gaulton, A.4
Maudling, N.5
Mitchell, A.L.6
Moulton, G.7
Nordle, A.8
Paine, K.9
Taylor, P.10
-
7
-
-
0037249633
-
The TIGRFAMs database of protein families
-
165575 12520025 10.1093/nar/gkg128
-
Haft DH Selengut JD White O The TIGRFAMs database of protein families Nucleic Acids Res 2003 31 1 371-373 165575 12520025 10.1093/nar/gkg128
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 371-373
-
-
Haft, D.H.1
Selengut, J.D.2
White, O.3
-
8
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Database 1347511 16381856 10.1093/nar/gkj149
-
Finn RD Mistry J Schuster-Bockler B Griffiths-Jones S Hollich V Lassmann T Moxon S Marshall M Khanna A Durbin R Pfam: Clans, web tools and services Nucleic Acids Res 2006 34 Database D247-251 1347511 16381856 10.1093/nar/gkj149
-
(2006)
Nucleic Acids Res
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
-
9
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
34487 9600884 10.1073/pnas.95.11.5857
-
Schultz J Milpetz F Bork P Ponting CP SMART, a simple modular architecture research tool: Identification of signaling domains Proc Natl Acad Sci USA 1998 95 11 5857-5864 34487 9600884 10.1073/ pnas.95.11.5857
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, Issue.11
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
10
-
-
13444282474
-
InterPro, progress and status in 2005
-
Database 540060 15608177
-
Mulder NJ Apweiler R Attwood TK Bairoch A Bateman A Binns D Bradley P Bork P Bucher P Cerutti L InterPro, progress and status in 2005 Nucleic Acids Res 2005 33 Database D201-205 540060 15608177
-
(2005)
Nucleic Acids Res
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bradley, P.7
Bork, P.8
Bucher, P.9
Cerutti, L.10
-
11
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
10.1126/science.287.5461.2185 10731132
-
Adams MD Celniker SE Holt RA Evans CA Gocayne JD Amanatides PG Scherer SE Li PW Hoskins RA Galle RF The genome sequence of Drosophila melanogaster Science 2000 287 5461 2185-2195 10.1126/ science.287.5461.2185 10731132
-
(2000)
Science
, vol.287
, Issue.5461
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
12
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
10.1038/35057062 11237011
-
Lander ES Linton LM Birren B Nusbaum C Zody MC Baldwin J Devon K Dewar K Doyle M FitzHugh W Initial sequencing and analysis of the human genome Nature 2001 409 6822 860-921 10.1038/35057062 11237011
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
13
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
Database 1347523 16381842 10.1093/nar/gkj161
-
Wu CH Apweiler R Bairoch A Natale DA Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R The Universal Protein Resource (UniProt): An expanding universe of protein information Nucleic Acids Res 2006 34 Database D187-191 1347523 16381842 10.1093/nar/gkj161
-
(2006)
Nucleic Acids Res
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
Boeckmann, B.6
Ferro, S.7
Gasteiger, E.8
Huang, H.9
Lopez, R.10
-
14
-
-
0037959894
-
Specialized hidden Markov model databases for microbial genomics
-
10.1002/cfg.280
-
Gollery M Specialized hidden Markov model databases for microbial genomics Comparative and Functional Genomics 2003 4 2 250-254 10.1002/ cfg.280
-
(2003)
Comparative and Functional Genomics
, vol.4
, Issue.2
, pp. 250-254
-
-
Gollery, M.1
-
15
-
-
0036406263
-
TLFAM - A New Set of Protein Family Databases
-
10.1089/15362310252780825 11881833
-
Gollery M TLFAM - A New Set of Protein Family Databases OMICS A Journal of Integrative Biology 2002 6 1 35-37 10.1089/15362310252780825 11881833
-
(2002)
OMICS A Journal of Integrative Biology
, vol.6
, Issue.1
, pp. 35-37
-
-
Gollery, M.1
-
16
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
29819 11125040 10.1093/nar/29.1.22
-
Tatusov RL Natale DA Garkavtsev IV Tatusova TA Shankavaram UT Rao BS Kiryutin B Galperin MY Fedorova ND Koonin EV The COG database: New developments in phylogenetic classification of proteins from complete genomes Nucleic Acids Res 2001 29 1 22-28 29819 11125040 10.1093/nar/ 29.1.22
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.1
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
17
-
-
9144256852
-
Predicting N-terminal myristoylation sites in plant proteins
-
449705 15202951
-
Podell S Gribskov M Predicting N-terminal myristoylation sites in plant proteins Bmc Genomics 2004 5 449705 15202951
-
(2004)
Bmc Genomics
, vol.5
-
-
Podell, S.1
Gribskov, M.2
-
18
-
-
34247537338
-
-
e-Fungi http://www.e-fungi.org.uk/
-
-
-
-
19
-
-
0030925920
-
Pfam: A comprehensive database of protein domain families based on seed alignments
-
10.1002/(SICI)1097-0134(199707)28:3<405::AID-PROT10>3.0.CO;2-L 9223186
-
Sonnhammer EL Eddy SR Durbin R Pfam: A comprehensive database of protein domain families based on seed alignments Proteins 1997 28 3 405-420 10.1002/(SICI)1097-0134(199707)28:3<405::AID-PROT10>3.0.CO;2-L 9223186
-
(1997)
Proteins
, vol.28
, Issue.3
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
20
-
-
0033022866
-
Pneumococcal licD2 gene is involved in phosphorylcholine metabolism
-
10.1046/j.1365-2958.1999.01291.x 10200966
-
Zhang JR Idanpaan-Heikkila I Fischer W Tuomanen EI Pneumococcal licD2 gene is involved in phosphorylcholine metabolism Mol Microbiol 1999 31 5 1477-1488 10.1046/j.1365-2958.1999.01291.x 10200966
-
(1999)
Mol Microbiol
, vol.31
, Issue.5
, pp. 1477-1488
-
-
Zhang, J.R.1
Idanpaan-Heikkila, I.2
Fischer, W.3
Tuomanen, E.I.4
-
21
-
-
34247544623
-
Pfam online database
-
Pfam online database http://www.sanger.ac.uk/Software/Pfam/
-
-
-
-
22
-
-
0037249501
-
PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification
-
165562 12520017 10.1093/nar/gkg115
-
Thomas PD Kejariwal A Campbell MJ Mi H Diemer K Guo N Ladunga I Ulitsky-Lazareva B Muruganujan A Rabkin S PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification Nucleic Acids Res 2003 31 1 334-341 165562 12520017 10.1093/nar/gkg115
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 334-341
-
-
Thomas, P.D.1
Kejariwal, A.2
Campbell, M.J.3
Mi, H.4
Diemer, K.5
Guo, N.6
Ladunga, I.7
Ulitsky-Lazareva, B.8
Muruganujan, A.9
Rabkin, S.10
-
23
-
-
0033563522
-
Whole genome protein domain analysis using a new method for domain clustering
-
10.1016/S0097-8485(99)00011-X 10404623
-
Gouzy J Corpet F Kahn D Whole genome protein domain analysis using a new method for domain clustering Comput Chem 1999 23 3-4 333-340 10.1016/ S0097-8485(99)00011-X 10404623
-
(1999)
Comput Chem
, vol.23
, Issue.3-4
, pp. 333-340
-
-
Gouzy, J.1
Corpet, F.2
Kahn, D.3
-
24
-
-
13444273448
-
The universal protein resource (UniProt)
-
540024 15608167 10.1093/nar/gki070
-
Bairoch A Apweiler R Wu CH Barker WC Boeckmann B Ferro S Gasteiger E Huang HZ Lopez R Magrane M The universal protein resource (UniProt) Nucleic Acids Research 2005 33 D154-D159 540024 15608167 10.1093/nar/ gki070
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.Z.8
Lopez, R.9
Magrane, M.10
-
26
-
-
0031743421
-
Profile hidden Markov models
-
10.1093/bioinformatics/14.9.755 9918945
-
Eddy SR Profile hidden Markov models Bioinformatics 1998 14 9 755-763 10.1093/bioinformatics/14.9.755 9918945
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 755-763
-
-
Eddy, S.R.1
-
27
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
168907 12824352 10.1093/nar/gkg500
-
Chenna R Sugawara H Koike T Lopez R Gibson TJ Higgins DG Thompson JD Multiple sequence alignment with the Clustal series of programs Nucleic Acids Research 2003 31 13 3497-3500 168907 12824352 10.1093/nar/gkg500
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
28
-
-
84874663198
-
Fungal Genome Initiative
-
The-Broad-Institute
-
The-Broad-Institute Fungal Genome Initiative http://www.broad.mit.edu/ annotation/fgi/
-
-
-
-
29
-
-
33846861493
-
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
-
10.1038/nbt1282 17259976
-
Pel HJ de Winde JH Archer DB Dyer PS Hofmann G Schaap PJ Turner G de Vries RP Albang R Albermann K Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 Nat Biotechnol 2007 25 2 221-231 10.1038/nbt1282 17259976
-
(2007)
Nat Biotechnol
, vol.25
, Issue.2
, pp. 221-231
-
-
Pel, H.J.1
de Winde, J.H.2
Archer, D.B.3
Dyer, P.S.4
Hofmann, G.5
Schaap, P.J.6
Turner, G.7
de Vries, R.P.8
Albang, R.9
Albermann, K.10
|