-
1
-
-
5044222204
-
How did alternative splicing evolve?
-
Ast G. 2004. How did alternative splicing evolve? Nat Rev Genet. 5:773-782.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 773-782
-
-
Ast, G.1
-
2
-
-
24644493193
-
Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing
-
Baek D, Green P. 2005. Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing. Proc Natl Acad Sci USA. 102:12813-12818.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12813-12818
-
-
Baek, D.1
Green, P.2
-
3
-
-
0035834430
-
In silico screening for tumour-specific expressed sequences in human genome
-
Baranova AV, Lobashev AV, Ivanov DV, Krukovskaya LL, Yankovsky NK, Kozlov AP. 2001. In silico screening for tumour-specific expressed sequences in human genome. FEBS Lett. 508:143-148.
-
(2001)
FEBS Lett
, vol.508
, pp. 143-148
-
-
Baranova, A.V.1
Lobashev, A.V.2
Ivanov, D.V.3
Krukovskaya, L.L.4
Yankovsky, N.K.5
Kozlov, A.P.6
-
4
-
-
0023824450
-
On/off regulation of gene expression at the level of splicing
-
Bingham PM, Chou TB, Mims I, Zachar Z. 1988. On/off regulation of gene expression at the level of splicing. Trends Genet. 4:134-138.
-
(1988)
Trends Genet
, vol.4
, pp. 134-138
-
-
Bingham, P.M.1
Chou, T.B.2
Mims, I.3
Zachar, Z.4
-
5
-
-
0016063911
-
The genetics of Caenorhabditis elegans
-
Brenner S. 1974. The genetics of Caenorhabditis elegans. Genetics. 77:71-94.
-
(1974)
Genetics
, vol.77
, pp. 71-94
-
-
Brenner, S.1
-
6
-
-
0036078675
-
Fourfold faster rate of genome rearrangement in nematodes than in Drosophila
-
Coghlan A, Wolfe KH. 2002. Fourfold faster rate of genome rearrangement in nematodes than in Drosophila. Genome Res. 12:857-867.
-
(2002)
Genome Res
, vol.12
, pp. 857-867
-
-
Coghlan, A.1
Wolfe, K.H.2
-
7
-
-
28644441707
-
Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency
-
Colot HV, Loros JJ, Dunlap JC. 2005. Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency. Mol Biol Cell. 16:5563-5571.
-
(2005)
Mol Biol Cell
, vol.16
, pp. 5563-5571
-
-
Colot, H.V.1
Loros, J.J.2
Dunlap, J.C.3
-
8
-
-
17644391787
-
Quantication of G protein Gaalphas subunit splice variants in different human tissues and cells using pyrosequencing
-
Frey UH, Nuckel H, Dobrev D, Manthey I, Sandalcioglu IE, Eisenhardt A, Worm K, Hauner H, Siffert W. 2005. Quantication of G protein Gaalphas subunit splice variants in different human tissues and cells using pyrosequencing. Gene Expr. 12:69-81.
-
(2005)
Gene Expr
, vol.12
, pp. 69-81
-
-
Frey, U.H.1
Nuckel, H.2
Dobrev, D.3
Manthey, I.4
Sandalcioglu, I.E.5
Eisenhardt, A.6
Worm, K.7
Hauner, H.8
Siffert, W.9
-
9
-
-
0842269784
-
A conformational switch in the Piccolo C2A domain regulated by alternative splicing
-
Garcia J, Gerber SH, Sugita S, Sudhof TC, Rizo J. 2004. A conformational switch in the Piccolo C2A domain regulated by alternative splicing. Nat Struct Mol Biol. 11:45-53.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 45-53
-
-
Garcia, J.1
Gerber, S.H.2
Sugita, S.3
Sudhof, T.C.4
Rizo, J.5
-
10
-
-
0347623371
-
Genome-wide survey of human alternative premRNA splicing with exon junction microarrays
-
Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. 2003. Genome-wide survey of human alternative premRNA splicing with exon junction microarrays. Science. 302:2141-2144.
-
(2003)
Science
, vol.302
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
Santos, R.7
Schadt, E.E.8
Stoughton, R.9
Shoemaker, D.D.10
-
11
-
-
33746609827
-
Intronic alternative splicing regulators identified by comparative genomics in nematodes. PLoS
-
Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM. 2006. Intronic alternative splicing regulators identified by comparative genomics in nematodes. PLoS Comput Biol. 2:e86.
-
(2006)
Comput Biol
, vol.2
-
-
Kabat, J.L.1
Barberan-Soler, S.2
McKenna, P.3
Clawson, H.4
Farrer, T.5
Zahler, A.M.6
-
12
-
-
26944484831
-
Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles
-
Kan Z, Garrett-Engele PW, Johnson JM, Castle JC. 2005. Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles. Nucleic Acids Res. 33:5659-5666.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5659-5666
-
-
Kan, Z.1
Garrett-Engele, P.W.2
Johnson, J.M.3
Castle, J.C.4
-
13
-
-
0035036534
-
-
Kan Z, Rouchka EC, Gish WR, States DJ. 2001. Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Res. 11:889-900.
-
Kan Z, Rouchka EC, Gish WR, States DJ. 2001. Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Res. 11:889-900.
-
-
-
-
14
-
-
18744390284
-
Selecting for functional alternative splices in ESTs
-
Kan Z, States D, Gish W. 2002. Selecting for functional alternative splices in ESTs. Genome Res. 12:1837-1845.
-
(2002)
Genome Res
, vol.12
, pp. 1837-1845
-
-
Kan, Z.1
States, D.2
Gish, W.3
-
15
-
-
0346100700
-
The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome
-
Katju V, Lynch M. 2003. The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome. Genetics. 165:1793-1803.
-
(2003)
Genetics
, vol.165
, pp. 1793-1803
-
-
Katju, V.1
Lynch, M.2
-
16
-
-
0033832676
-
Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment
-
Kent WJ, Zahler AM. 2000. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res. 10:1115-1125.
-
(2000)
Genome Res
, vol.10
, pp. 1115-1125
-
-
Kent, W.J.1
Zahler, A.M.2
-
17
-
-
4444346326
-
Estimating rates of alternative splicing in mammals and invertebrates
-
Kim H, Klein R, Majewski J, Ott J. 2004. Estimating rates of alternative splicing in mammals and invertebrates. Nat Gen. 36:915-916.
-
(2004)
Nat Gen
, vol.36
, pp. 915-916
-
-
Kim, H.1
Klein, R.2
Majewski, J.3
Ott, J.4
-
18
-
-
38449115407
-
-
Kiontke K, Sudhaus W. January 9, 2006. Ecology of Ceanorhabditis species [Internet]. In: The C. elegans Research Community. WormBook. 10.1895/wormbook.1.37.1. Available from: http://www.wormbook.org.
-
Kiontke K, Sudhaus W. January 9, 2006. Ecology of Ceanorhabditis species [Internet]. In: The C. elegans Research Community. WormBook. 10.1895/wormbook.1.37.1. Available from: http://www.wormbook.org.
-
-
-
-
19
-
-
20044383938
-
Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms
-
Kopelman NM, Lancet D, Yanai I. 2005. Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms. Nat Genet. 37:588-589.
-
(2005)
Nat Genet
, vol.37
, pp. 588-589
-
-
Kopelman, N.M.1
Lancet, D.2
Yanai, I.3
-
20
-
-
25444517024
-
Alu-SINE exonization: En route to protein-coding function
-
Krull M, Brosius J, Schmitz J. 2005. Alu-SINE exonization: en route to protein-coding function. Mol Biol Evol. 22:1702-1711.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1702-1711
-
-
Krull, M.1
Brosius, J.2
Schmitz, J.3
-
21
-
-
0034710898
-
Molecular basis for modulation of biological function by alternate splicing of the Wilms' tumor suppressor protein
-
Laity JH, Dyson HJ, Wright PE. 2000. Molecular basis for modulation of biological function by alternate splicing of the Wilms' tumor suppressor protein. Proc Natl Acad Sci USA. 97:11932-11935.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11932-11935
-
-
Laity, J.H.1
Dyson, H.J.2
Wright, P.E.3
-
23
-
-
0034718614
-
Alternative splicing of the rat sodium/bile acid transporter changes its cellular localization and transport properties
-
Lazaridis KN, Tietz P, Wu T, Kip S, Dawson PA, LaRusso NF. 2000. Alternative splicing of the rat sodium/bile acid transporter changes its cellular localization and transport properties. Proc Natl Acad Sci USA. 97:11092-11097.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11092-11097
-
-
Lazaridis, K.N.1
Tietz, P.2
Wu, T.3
Kip, S.4
Dawson, P.A.5
LaRusso, N.F.6
-
24
-
-
0037422575
-
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
-
Lewis BP, Green RE, Brenner SE. 2003. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc Natl Acad Sci USA. 100:189-192.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 189-192
-
-
Lewis, B.P.1
Green, R.E.2
Brenner, S.E.3
-
25
-
-
0037062982
-
Alternative pre-mRNA splicing and proteome expansion in metazoans
-
Maniatis T, Tasic B. 2002. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature. 418:236-243.
-
(2002)
Nature
, vol.418
, pp. 236-243
-
-
Maniatis, T.1
Tasic, B.2
-
26
-
-
33645502893
-
A dominant negative human GHRH receptor splice variant inhibits GHRH binding
-
McElvaine AT, Mayo KE. 2006. A dominant negative human GHRH receptor splice variant inhibits GHRH binding. Endocrinology. 147:1884-1894.
-
(2006)
Endocrinology
, vol.147
, pp. 1884-1894
-
-
McElvaine, A.T.1
Mayo, K.E.2
-
27
-
-
0029874986
-
Bcl-x(S) antagonizes the protective effects of Bcl-x(L)
-
Minn AJ, Boise LH, Thompson CB. 1996. Bcl-x(S) antagonizes the protective effects of Bcl-x(L). J Biol Chem. 271:6306-6312.
-
(1996)
J Biol Chem
, vol.271
, pp. 6306-6312
-
-
Minn, A.J.1
Boise, L.H.2
Thompson, C.B.3
-
29
-
-
0036337915
-
A genomic view of alternative splicing
-
Modrek B, Lee C. 2002. A genomic view of alternative splicing. Nat Genet. 30:13-19.
-
(2002)
Nat Genet
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
30
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
Modrek B, Lee CJ. 2003. Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat Genet. 34:177-180.
-
(2003)
Nat Genet
, vol.34
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
31
-
-
0035393343
-
Genome-wide detection of alternative splicing in expressed sequences of human genes
-
Modrek B, Resch A, Grasso C, Lee C. 2001. Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Res. 29:2850-2859.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2850-2859
-
-
Modrek, B.1
Resch, A.2
Grasso, C.3
Lee, C.4
-
32
-
-
0030931561
-
SMG mutants affect the expression of alternatively spliced SR protein mRNAs in Caenorhabditis elegans
-
Morrison M, Harris KS, Roth MB. 1997. SMG mutants affect the expression of alternatively spliced SR protein mRNAs in Caenorhabditis elegans. Proc Natl Acad Sci USA. 94:9782-9785.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 9782-9785
-
-
Morrison, M.1
Harris, K.S.2
Roth, M.B.3
-
33
-
-
0032849672
-
Complex patterns of alternative splicing mediate the spatial and temporal distribution of perlecan/UNC-52 in Caenorhabditis elegans
-
Mullen GP, Rogalski TM, Bush JA, Gorji PR, Moerman DG. 1999. Complex patterns of alternative splicing mediate the spatial and temporal distribution of perlecan/UNC-52 in Caenorhabditis elegans. Mol Biol Cell. 10:3205-3221.
-
(1999)
Mol Biol Cell
, vol.10
, pp. 3205-3221
-
-
Mullen, G.P.1
Rogalski, T.M.2
Bush, J.A.3
Gorji, P.R.4
Moerman, D.G.5
-
34
-
-
0001048740
-
Reproductive patterns and attempts at reciprocal crossing of Rhabditis elegans Maupas, 1900, and Rhabditis briggsae Dougherty and Nigon, 1949 (Nematoda: Rhabditidae)
-
Nigon V, Dougherty EC. 1949. Reproductive patterns and attempts at reciprocal crossing of Rhabditis elegans Maupas, 1900, and Rhabditis briggsae Dougherty and Nigon, 1949 (Nematoda: Rhabditidae). J Exp Zool. 112:485-503.
-
(1949)
J Exp Zool
, vol.112
, pp. 485-503
-
-
Nigon, V.1
Dougherty, E.C.2
-
35
-
-
0036498543
-
Splicing regulation as a potential genetic modifier
-
Nissim-Rafinia M, Kerem B. 2002. Splicing regulation as a potential genetic modifier. Trends Genet. 18:123-127.
-
(2002)
Trends Genet
, vol.18
, pp. 123-127
-
-
Nissim-Rafinia, M.1
Kerem, B.2
-
36
-
-
0037669010
-
Low conservation of alternative splicing patterns in the human and mouse genomes
-
Nurtdinov RN, Artamonova II, Mironov AA, Gelfand MS. 2003. Low conservation of alternative splicing patterns in the human and mouse genomes. Hum Mol Genet. 12:1313-1320.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1313-1320
-
-
Nurtdinov, R.N.1
Artamonova, I.I.2
Mironov, A.A.3
Gelfand, M.S.4
-
37
-
-
10944245056
-
Alternative splicing of conserved exons is frequently species-specific in human and mouse
-
Pan Q, Bakowski MA, Morris Q, Zhang W, Frey BJ, Hughes TR, Blencowe BJ. 2005. Alternative splicing of conserved exons is frequently species-specific in human and mouse. Trends Genet. 21:73-77.
-
(2005)
Trends Genet
, vol.21
, pp. 73-77
-
-
Pan, Q.1
Bakowski, M.A.2
Morris, Q.3
Zhang, W.4
Frey, B.J.5
Hughes, T.R.6
Blencowe, B.J.7
-
38
-
-
0042160033
-
Alternative splicing of the muscarinic acetylcholine receptor GAR-3 in Caenorhabditis elegans
-
Park YS, Kim S, Shin Y, Choi B, Cho NJ. 2003. Alternative splicing of the muscarinic acetylcholine receptor GAR-3 in Caenorhabditis elegans. Biochem Biophys Res Commun. 308:961-965.
-
(2003)
Biochem Biophys Res Commun
, vol.308
, pp. 961-965
-
-
Park, Y.S.1
Kim, S.2
Shin, Y.3
Choi, B.4
Cho, N.J.5
-
39
-
-
2542603045
-
Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation
-
Resch A, Xing Y, Alekseyenko A, Modrek B, Lee C. 2004. Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation. Nucleic Acids Res. 32:1261-1269.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1261-1269
-
-
Resch, A.1
Xing, Y.2
Alekseyenko, A.3
Modrek, B.4
Lee, C.5
-
40
-
-
0037795455
-
Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
-
Roy SW, Fedorov A, Gilbert W. 2003. Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc Natl Acad Sci USA. 100:7158-7162.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7158-7162
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
41
-
-
1642473041
-
How prevalent is functional alternative splicing in the human genome?
-
Sorek R, Shamir R, Ast G. 2004. How prevalent is functional alternative splicing in the human genome? Trends Genet. 20:68-71.
-
(2004)
Trends Genet
, vol.20
, pp. 68-71
-
-
Sorek, R.1
Shamir, R.2
Ast, G.3
-
42
-
-
4243088097
-
-
Stein LD, Bao Z, Blasiar D, et al. (36 co-authors). 2003. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1:E45.
-
Stein LD, Bao Z, Blasiar D, et al. (36 co-authors). 2003. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1:E45.
-
-
-
-
43
-
-
2442694425
-
Transcriptome and genome conservation of alternative splicing events in humans and mice
-
Sugnet CW, Kent WJ, Ares M Jr, Haussler D. 2004. Transcriptome and genome conservation of alternative splicing events in humans and mice. Pac Symp Biocomput. 9:66-77.
-
(2004)
Pac Symp Biocomput
, vol.9
, pp. 66-77
-
-
Sugnet, C.W.1
Kent, W.J.2
Ares Jr, M.3
Haussler, D.4
-
44
-
-
4344692339
-
Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs
-
Suzuki M, Hayashizaki Y. 2004. Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs. Bioessays. 26:833-843.
-
(2004)
Bioessays
, vol.26
, pp. 833-843
-
-
Suzuki, M.1
Hayashizaki, Y.2
-
45
-
-
0036270811
-
Structure and evolution of neurexin genes: Insight into the mechanism of alternative splicing
-
Tabuchi K, Sudhof TC. 2002. Structure and evolution of neurexin genes: insight into the mechanism of alternative splicing. Genomics. 79:849-859.
-
(2002)
Genomics
, vol.79
, pp. 849-859
-
-
Tabuchi, K.1
Sudhof, T.C.2
-
46
-
-
0037163115
-
Inhibition of the splicing of glucose-6-phosphate dehydrogenase precursor mRNA by polyunsaturated fatty acids
-
Tao H, Szeszel-Fedorowicz W, Amir-Ahmady B, Gibson MA, Stabile LP, Salati LM. 2002. Inhibition of the splicing of glucose-6-phosphate dehydrogenase precursor mRNA by polyunsaturated fatty acids. J Biol Chem. 277:31270-31278.
-
(2002)
J Biol Chem
, vol.277
, pp. 31270-31278
-
-
Tao, H.1
Szeszel-Fedorowicz, W.2
Amir-Ahmady, B.3
Gibson, M.A.4
Stabile, L.P.5
Salati, L.M.6
-
47
-
-
0037705467
-
Conservation of human alternative splice events in mouse
-
Thanaraj TA, Clark F, Muilu J. 2003. Conservation of human alternative splice events in mouse. Nucleic Acids Res. 31:2544-2552.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2544-2552
-
-
Thanaraj, T.A.1
Clark, F.2
Muilu, J.3
-
48
-
-
0041691163
-
Subcellular compartmentalization of human Nfu, an iron-sulfur cluster scaffold protein, and its ability to assemble a [4Fe-4S] cluster
-
Tong WH, Jameson GN, Huynh BH, Rouault TA. 2003. Subcellular compartmentalization of human Nfu, an iron-sulfur cluster scaffold protein, and its ability to assemble a [4Fe-4S] cluster. Proc Natl Acad Sci USA. 100:9762-9767.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9762-9767
-
-
Tong, W.H.1
Jameson, G.N.2
Huynh, B.H.3
Rouault, T.A.4
-
49
-
-
34047223473
-
The nematode
-
Cold Spring Harbor NY, Cold Spring Harbor Laboratory Press
-
Wood WB. 1988. The nematode Caenorhabditis elegans. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press.
-
(1988)
Caenorhabditis elegans
-
-
Wood, W.B.1
-
50
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-556.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
51
-
-
8144225362
-
Variation in sequence and organization of splicing regulatory elements in vertebrate genes
-
Yeo G, Hoon S, Venkatesh B, Burge CB. 2004. Variation in sequence and organization of splicing regulatory elements in vertebrate genes. Proc Natl Acad Sci USA. 101:15700-15705.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15700-15705
-
-
Yeo, G.1
Hoon, S.2
Venkatesh, B.3
Burge, C.B.4
-
52
-
-
14544277546
-
Identification and analysis of alternative splicing events conserved in human and mouse
-
Yeo GW, Van Nostrand E, Holste D, Poggio T, Burge CB. 2005. Identification and analysis of alternative splicing events conserved in human and mouse. Proc Natl Acad Sci USA. 102:2850-2855.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2850-2855
-
-
Yeo, G.W.1
Van Nostrand, E.2
Holste, D.3
Poggio, T.4
Burge, C.B.5
-
53
-
-
0030614546
-
Cloning of Caenorhabditis U2AF65: An alternatively spliced RNA containing a novel exon
-
Zorio D, Lea K, Blumenthal T. 1997. Cloning of Caenorhabditis U2AF65: an alternatively spliced RNA containing a novel exon. Mol Cell Biol. 17:946-953.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 946-953
-
-
Zorio, D.1
Lea, K.2
Blumenthal, T.3
|