Characterization of STIP, a multi-domain nuclear protein, highly conserved in metazoans, and essential for embryogenesis in Caenorhabditis elegans

Experimental Cell Research

Volumn 313, Issue 7, 2007, Pages 1460-1472

  Ji, Qiongmei ^a   Huang, Cheng Han ^a   Peng, Jianbin ^a   Hashmi, Sarwar ^a   Ye, Tianzhang ^a   Chen, Ying ^a  

^a NEW YORK BLOOD CENTER   (United States)

Author keywords

Coiled coil; Cross species complementation; Embryonic development; G patch; Gene evolution; Nuclear localization; Protein structure; STIP

Indexed keywords

MESSENGER RNA; NUCLEAR PROTEIN; PROTEIN STIP 1; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; DEVELOPMENTAL STAGE; EMBRYO; EMBRYO DEVELOPMENT; GENE; GENE EXPRESSION; HUMAN; HUMAN CELL; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEAR IMPORT; OOCYTE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN CONFORMATION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN POLYMERIZATION; PROTEIN TARGETING; RAT; REPORTER GENE; RNA ANALYSIS; RNA INTERFERENCE; RNA TRANSLATION; STIP 1 GENE; TRANS SPLICING; WESTERN BLOTTING;

CAENORHABDITIS ELEGANS; MAMMALIA; METAZOA;

EID: 33947727751     PISSN: 00144827     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.yexcr.2007.01.003     Document Type: Article

References (34)

1. Aravind L., and Koonin E.V. G-patch: a new conserved domain in eukaryotic RNA-processing proteins and type D retroviral polyproteins. Trends Biochem. Sci. 24 (1999) 342-344
2. Shih H.P., Hales K.G., Pringle J.R., and Peifer M. Identification of septin-interacting proteins and characterization of the Smt3/SUMO-conjugation system in Drosophila. J. Cell Sci. 115 (2002) 1259-1271
3. Paine C.T., Paine L., Luo W., Okamoto C.T., Lyngstadaas S.P., and Snead M.L. A tuftelin-interacting protein (TIP39) localizes to the apical secretory pole of mouse ameloblasts. J. Biol. Chem. 275 (2000) 22284-22292
4. Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villén J., Li J., Cohen M.A., Cantley L.C., and Gygi S.P. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 12130-12135
5. Wen X., Lei Y.P., Zhou Y.L., Okamoto C.T., Snead M.L., and Paine M.L. Structural organization and cellular localization of tuftelin-interacting protein 11 (TFIP11). Cell. Mol. Life Sci. 62 (2005) 1038-1046
6. Giot L., Bader J.S., Brouwer C., Chaudhuri A., Kuang B., Li Y., Hao Y.L., Ooi C.E., Godwin B., Vitols E., Vijayadamodar G., Pochart P., Machineni H., Welsh M., Kong Y., Zerhusen B., Malcolm R., Varrone Z., Collis A., Minto M., Burgess S., McDaniel L., Stimpson E., Spriggs F., Williams J., Neurath K., Ioime N., Agee M., Voss E., Furtak K., Renzulli R., Aanensen N., Carrolla S., Bickelhaupt E., Lazovatsky Y., DaSilva A., Zhong J., Stanyon C.A., Finley R.L., White Jr. K.P., Braverman M., Jarvie T., Gold S., Leach M., Knight J., Shimkets A., McKenna P., Chant J., and Rothberg M. A protein interaction map of Drosophila melanogaster. Science 302 (2003) 1727-1736
7. Li S., Armstrong C.M., Bertin N., Ge H., Milstein S., Boxem M., Vidalain P.O., Han J.D., Chesneau A., Hao T., Goldberg D.S., Li N., Martinez M., Rual J.F., Lamesch P., Xu L., Tewari M., Wong S.L., Zhang L.V., Berriz G.F., Jacotot L., Vaglio P., Reboul J., Hirozane-Kishikawa T., Li Q., Gabel H.W., Elewa A., Baumgartner B., Rose D.J., Yu H., Bosak S., Sequerra R., Fraser A., Mango S.E., Saxton M., Strome S., van den Heuvel S., Piano F., Vandenhaute J., Sardet C., Gerstein M., Doucette-Stamm L., Gunsalus K.C., Harper J.W., Cusick M.E., Roth F.P., Hill D.E., and Vidal M. A map of the interactome network of the metazoan C. elegans. Science 303 (2004) 540-543
8. Zhou Z., Licklider L.J., Gygi S.P., and Reed R. Comprehensive proteomic analysis of the human spliceosome. Nature 419 (2002) 182-185
9. Rappsilber J., Ryder U., Lamond A.I., and Mann M. Large-scale proteomic analysis of the human spliceosome. Genome Res. 12 (2002) 1231-1245
10. Jurica M.S., and Moore M.J. Pre-mRNA splicing: a wash in a sea of proteins. Mol. Cell 12 (2003) 5-14
11. Brenner S. The genetics of Caenorhabditis elegans. Genetics 77 (1974) 71-94
12. Ji Q., Hashmi S., Liu Z., Zhang J., Chen Y., and Huang C.-H. CeRh1 (rhr-1) is a dominant Rhesus gene essential for embryonic development and hypodermal function in Caenorhabditis elegans. Proc. Natl. Acad. Sci. U. S. A. 130 (2006) 5581-5886
13. Huang C.-H., and Peng J. Evolutionary conservation and diversification of Rh family genes and proteins. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 15512-15517
14. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic acids Res. 25 (1997) 3389-3402
15. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004) 1792-1797
16. Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17 (2001) 1244-1245
17. Lupas A., Van Dyke M., and Stock J. Predicting coiled coils from protein sequences. Science 252 (1991) 1162-1164
18. Cuff J.A., Clamp M.E., Siddiqui A.S., Finlay M., and Barton G.J. Pred: a consensus secondary structure prediction server. Bioinformatics 14 (1998) 892-893
19. Hashmi S., Zhang J., Oksov Y., and Lustigman S. The Caenorhabditis elegans cathepsin Z-like cysteine protease, Ce-CPZ-1, has a multifunctional role during the worms' development. J. Biol. Chem. 279 (2004) 6035-6045
20. Harlow E., and Lane D. Antibodies: A Laboratory Manual. 1st ed. (1988)
21. Fire A. Integrative transformation of Caenorhabditis elegans. EMBO J. 5 (1986) 2673-2680
22. Mello C.C., Kramer J.M., Stinchcomb D., and Ambros V. Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences. EMBO J. 10 (1991) 3959-3970
23. Kramer J.M., French R.P., Park E.C., and Johnson J.J. The Caenorhabditis elegans rol-6 gene, which interacts with the sqt-1 collagen gene to determine organismal morphology, encodes a collagen. Mol. Cell. Biol. 10 (1990) 2081-2089
24. Britton C., Mckerrow J.H., and Johnstone I.L. Regulation of the Caenorhabditis elegans gut cysteine protease gene cpr-1: requirement for GATA motifs. J. Mol. Biol. 283 (1998) 15-27
25. Fire A., Xu S., Montgomery M.K., Kostas S.A., Driver E., and Mello C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391 (1998) 806-811
26. Tabara H., Grishok A., and Mello C.C. RNAi in C. elegans: soaking in the genome sequence. Science 282 (1998) 430-431
27. Britton C., and Murray L. A cathepsin L protease essential for Caenorhabditis elegans embryogenesis is functionally conserved in parasitic nematodes. Mol. Biochem. Parasitol. 122 (2002) 21-33
28. Blumenthal T. Trans-splicing and polycistronic transcription in Caenorhabditis elegans. Trends Genet. 11 (1995) 132-136
29. Sönnichsen B., Koski L.B., Walsh A., Marschall P., Neumann B., Brehm M., Alleaume A.M., Artelt J., Bettencourt P., Cassin E., Hewitson M., Holz C., Khan M., Lazik S., Martin C., Nitzsche B., Ruer M., Stamford J., Winzi M., Heinkel R., Röder M., Finell J., Häntsch H., Jones S.J.M., Jones M., Piano F., Gunsalus K.C., Oegema K., Gönczy P., Coulson A., Hyman A.A., and Echeverri C.J. Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature 434 (2005) 462-469
30. Brunkow M.E., Jeffery E.W., Hjerrild K.A., Paeper B., Clark L.B., Yasayko S.A., Wilkinson J.E., Galas D., Ziegler S.F., and Ramsdell F. Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse. Nat. Genet. 27 (2001) 68-73
31. Sampson N.D., and Hewitt J.E. SF4 and SFRS14, two related putative splicing factors on human chromosome 19p13.11. Gene 305 (2003) 91-100
32. Niedick I., Froese N., Oumard A., Mueller P.P., Nourbakhsh M., Hauser H., and Koster M. Nucleolar localization and mobility analysis of the NF-kappaB repressing factor NRF. J. Cell Sci. 117 (2004) 3447-3458
33. Zhang Y., Cheng Y., Bi D., Palma K., and Li X. MOS2, a protein containing G-patch and KOW motifs, is essential for innate immunity in Arabidopsis thaliana. Curr. Biol. 15 (2005) 1936-1942
34. Sudol M., Chen H.I., Bougeret C., Einbond A., and Bork C. Characterization of a novel protein-binding module-WW domain. FEBS Lett. 369 (1995) 67-71