-
1
-
-
0025940629
-
The two-hybrid system: A method to identify and clone genes for proteins that interact with a protein of interest
-
Chien CT, Bartel AL, Sternglanz R, Fields S: The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc Natl Acad Sci U S A 1991, 88:9578-82.
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, pp. 9578-9582
-
-
Chien, C.T.1
Bartel, P.L.2
Sternglanz, R.3
Fields, S.4
-
2
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B: A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 1999, 17:1030-2.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
3
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
Rain JC, Selig L, De Reuse H, Battaglia V, Reverdy C, Simon S, Lenzen G, Petel F, Wojcik J, Schachter V, et al: The protein-protein interaction map of Helicobacter pylori. Nature 2001, 409:211-5.
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De Reuse, H.3
Battaglia, V.4
Reverdy, C.5
Simon, S.6
Lenzen, G.7
Petel, F.8
Wojcik, J.9
Schachter, V.10
-
4
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coil
-
Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, et al.: Interaction network containing conserved and essential protein complexes in Escherichia coil. Nature 2005, 433:531-7.
-
(2005)
Nature
, vol.433
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
Canadien, V.6
Starostine, A.7
Richards, D.8
Beattie, B.9
Krogan, N.10
-
5
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, et al.: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415:180-3.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
-
6
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, et al.: Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002, 415:141-7.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
-
7
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 2001, 98:4569-74.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
8
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevislae [see comments]
-
Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, et al.: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevislae [see comments]. Nature 2000, 403:623-7.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
-
9
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, et al.: A map of the interactome network of the metazoan C. elegans. Science 2004, 303:540-3.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
-
10
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, et al.: A protein interaction map of Drosophila melanogaster. Science 2003, 302:1727-36.
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
-
11
-
-
20144379646
-
Protein interaction mapping: A Drosophila case study
-
Formstecher E, Aresta S, Collura V, Hamburger A, Meil A, Trehin A, Reverdy C, Betin V, Maire S, Brun C, et al.: Protein interaction mapping: A Drosophila case study. Genome Res 2005, 15:376-84.
-
(2005)
Genome Res
, vol.15
, pp. 376-384
-
-
Formstecher, E.1
Aresta, S.2
Collura, V.3
Hamburger, A.4
Meil, A.5
Trehin, A.6
Reverdy, C.7
Betin, V.8
Maire, S.9
Brun, C.10
-
12
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P: Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002, 417:399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
13
-
-
14744270216
-
A first-draft human protein-interaction map
-
Lehner B, Fraser AG: A first-draft human protein-interaction map. Genome Biol 2004, 5:R63.
-
(2004)
Genome Biol
, vol.5
-
-
Lehner, B.1
Fraser, A.G.2
-
14
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm CE, Sonnhammer EL: Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 2001, 314:1041-52.
-
(2001)
J Mol Biol
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
15
-
-
18744376914
-
Online Predicted Human Interaction Database
-
Brown KR, Jurisica I: Online Predicted Human Interaction Database. Bioinformatics 2005, 21:2076-2082.
-
(2005)
Bioinformatics
, vol.21
, pp. 2076-2082
-
-
Brown, K.R.1
Jurisica, I.2
-
16
-
-
0037138406
-
MINT: A Molecular INTeraction database
-
Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich A, Cesareni G: MINT: a Molecular INTeraction database. FEBS Lett 2002, 513:135-40.
-
(2002)
FEBS Lett
, vol.513
, pp. 135-140
-
-
Zanzoni, A.1
Montecchi-Palazzi, L.2
Quondam, M.3
Ausiello, G.4
Helmer-Citterich, M.5
Cesareni, G.6
-
17
-
-
0034767547
-
Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins
-
Hegyi H, Gerstein M: AnnotatMon transfer for genomics: measuring functional divergence in multi-domain proteins. Genome Res 2001, 11:1632-40.
-
(2001)
Genome Res
, vol.11
, pp. 1632-1640
-
-
Hegyi, H.1
Gerstein, M.2
-
18
-
-
1842861592
-
Structure, function and evolution of multidomain proteins
-
Vogel C, Bashton M, Kerrison ND, Chothia C, Teichmann SA: Structure, function and evolution of multidomain proteins. Curr Opin Struct Biol 2004, 14:208-16.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 208-216
-
-
Vogel, C.1
Bashton, M.2
Kerrison, N.D.3
Chothia, C.4
Teichmann, S.A.5
-
19
-
-
0742323374
-
The HUPO PSI's molecular interaction format - A community standard for the representation of protein interaction data
-
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, et al.: The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data. Nat Biotechnol 2004, 22:177-83.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
von Mering, C.10
-
21
-
-
0037245913
-
BIND: The Blomolecular Interaction Network Database
-
Tader GD, Betel D, Hogue CW: BIND: the Blomolecular Interaction Network Database. Nucleic Acids Res 2003, 31:248-50.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.3
-
22
-
-
9144248312
-
IntAct: An open source molecular interaction database
-
(Database)
-
Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, et al.: IntAct: An open source molecular interaction database. Nucleic Acids Res 2004, 32(Database):D452-5.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
Vingron, M.7
Roechert, B.8
Roepstorff, P.9
Valencia, A.10
-
23
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, et al.: Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res 2003, 13:2363-7 1.
-
(2003)
Genome Res
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
Surendranath, V.6
Niranjan, V.7
Muthusamy, B.8
Gandhi, T.K.9
Gronborg, M.10
-
24
-
-
0036088133
-
DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
-
Xenarios I, Salwinski L, Duan XJ, Higney P, Kim SM, Eisenberg D: DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions. Nucleic Acids Res 2002, 30:303-5.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.M.5
Eisenberg, D.6
-
25
-
-
13444259844
-
Reactome: A knowledgebase of biological pathways
-
Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, de Bono B, JAssal B, Gopinath GR, Wu GR, Matthews L, et al.: Reactome: a knowledgebase of biological pathways. Nucleic Acids Res 2005, 33:D428-32.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'Eustachio, P.4
Schmidt, E.5
de Bono, B.6
Jassal, B.7
Gopinath, G.R.8
Wu, G.R.9
Matthews, L.10
-
26
-
-
9444239213
-
A probabilistic functional network of yeast genes
-
Lee I, Date SV, Adai AT, Marcotte EM: A probabilistic functional network of yeast genes. Science 2004, 306:1555-8.
-
(2004)
Science
, vol.306
, pp. 1555-1558
-
-
Lee, I.1
Date, S.V.2
Adai, A.T.3
Marcotte, E.M.4
-
27
-
-
0036789265
-
Analyzing yeast protein-protein interaction data obtained from different sources
-
Bader GD, Hogue CW: Analyzing yeast protein-protein interaction data obtained from different sources. Nat Biotechnol 2002, 20:991-7.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 991-997
-
-
Bader, G.D.1
Hogue, C.W.2
-
28
-
-
3042786293
-
A gene network for navigating the literature
-
Hoffmann R, Valencia A: A gene network for navigating the literature. Nat Genet 2004, 36:664.
-
(2004)
Nat Genet
, vol.36
, pp. 664
-
-
Hoffmann, R.1
Valencia, A.2
-
29
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Harris MA, Clark J, Ireland A, Lomax J, Ashbumer M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, et al.: The Gene Ontology (GO) database and informatics resource. Nucleic Adds Res 2004, 32:D258-61.
-
(2004)
Nucleic Adds Res
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashbumer, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
-
30
-
-
28744458859
-
Bioconductor open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al.: Bioconductor. open software development for computational biology and bioinformatics. Genome Biol 2004, 5:R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
31
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi ALU Oltvai ZN: Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5:101-13.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
32
-
-
4644231028
-
Prolinks: A database of protein functional linkages derived from coevolution
-
Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D: Prolinks: A database of protein functional linkages derived from coevolution. Genome Biol 2004, 5:R35.
-
(2004)
Genome Biol
, vol.5
-
-
Bowers, P.M.1
Pellegrini, M.2
Thompson, M.J.3
Fierro, J.4
Yeates, T.O.5
Eisenberg, D.6
-
33
-
-
10244242604
-
POINT: A database for the prediction of protein-protein interactions based on the orthologous interactome
-
Huang TW, Tien AC, Huang WS, Lee YC, Peng CL, Tseng HH, Kao CY, Huang CY. POINT: A database for the prediction of protein-protein interactions based on the orthologous interactome. Bioinformatics 2004, 20:3273-6.
-
(2004)
Bioinformatics
, vol.20
, pp. 3273-3276
-
-
Huang, T.W.1
Tien, A.C.2
Huang, W.S.3
Lee, Y.C.4
Peng, C.L.5
Tseng, H.H.6
Kao, C.Y.7
Huang, C.Y.8
-
34
-
-
0036081482
-
Predictome: A database of putative functional links between proteins
-
MellorAJC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C: Predictome: a database of putative functional links between proteins. Nucleic Acids Res 2002, 30:306-9.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 306-309
-
-
Mellor, J.C.1
Yanai, I.2
Clodfelter, K.H.3
Mintseris, J.4
DeLisi, C.5
-
35
-
-
0037250152
-
STRING: A database of predicted functional associations between proteins
-
voA Mering C, Huynen M, Jaeggii D, Schmidt S, Bork P, Snel B: STRING: a database of predicted functional associations between proteins. Nucleic Acids Res 2003, 31:258-61.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 258-261
-
-
von Mering, C.1
Huynen, M.2
Jaeggii, D.3
Schmidt, S.4
Bork, P.5
Snel, B.6
-
36
-
-
14844282107
-
Comparative interactomics
-
Cesareni G, Ceol A, Gavrila C, Palazzi LM, Persico M, Schneider MV: Comparative interactomics. FEBS Lett 2005, 579:1828-33.
-
(2005)
FEBS Lett
, vol.579
, pp. 1828-1833
-
-
Cesareni, G.1
Ceol, A.2
Gavrila, C.3
Palazzi, L.M.4
Persico, M.5
Schneider, M.V.6
-
37
-
-
13444249988
-
STRING: Known and predicted protein-protein associations, integrated and transferred across orpnisms
-
von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, JoKffre N, Huynen MA, Bork P: STRING: known and predicted protein-protein associations, integrated and transferred across orpnisms. Nucleic Acids Res 2005, 33:13433-7.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 13433-13437
-
-
von Mering, C.1
Jensen, L.J.2
Snel, B.3
Hooper, S.D.4
Krupp, M.5
Foglierini, M.6
Jouffre, N.7
Huynen, M.A.8
Bork, P.9
-
38
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-10.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
39
-
-
84886754497
-
-
[http//www.r-project.org/.]
-
-
-
-
41
-
-
0345864022
-
SMART 4.0: Towards genomic data integration
-
Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, PontiTg CP, Bork P: SMART 4.0: towards genomic data integration. Nudeic Acids Res 2004, 32:D142-4.
-
(2004)
Nudeic Acids Res
, vol.32
-
-
Letunic, I.1
Copley, R.R.2
Schmidt, S.3
Ciccarelli, F.D.4
Doerks, T.5
Schultz, J.6
Ponting, C.P.7
Bork, P.8
-
42
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, et al: The Pfam protein families database. Nucleic Acids Res 2004, 32:D138-41.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
-
43
-
-
0033963089
-
The ENZYME database in 2000
-
Bairoch A: The ENZYME database in 2000. Nucleic Acids Res 2000, 28:304-5.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 304-305
-
-
Bairoch, A.1
|