Molecular phylogeny of Demospongiae: Implications for classification and scenarios of character evolution

Molecular Phylogenetics and Evolution

Volumn 32, Issue 3, 2004, Pages 823-837

  Borchiellini, Carole ^a   Chombard, Catherine ^b   Manuel, Michaël ^c   Alivon, Eliane ^a   Vacelet, Jean ^a   Boury Esnault, Nicole ^a  

^a STATION MARINE D ENDOUME   (France)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^c SORBONNE UNIVERSITÉ   (France)

Author keywords

18S rRNA; Demospongiae; Partial 28S rRNA; Phylogeny; Porifera

Indexed keywords

PRIMER DNA; RNA 28S;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CLASSIFICATION; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; HISTOLOGY; MEDITERRANEAN SEA; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; REPRODUCTION; SPONGE (PORIFERA); STATISTICAL MODEL;

ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; DNA PRIMERS; LIKELIHOOD FUNCTIONS; MEDITERRANEAN SEA; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; REPRODUCTION; RNA, RIBOSOMAL, 28S; SEQUENCE ANALYSIS, DNA;

CERACTINOMORPHA; DEMOSPONGIAE; HOMOSCLEROMORPHA; PORIFERA; TETRACTINOMORPHA;

EID: 3843090680     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.02.021     Document Type: Article

References (59)

1. Alvarez B, Crisp M.D, Driver F, Hooper J.N.A, van Soest R.W.M. Phylogenetic relationships of the family Axinellidae (Porifera: Demospongiae) using morphological and molecular data. Zool. Scr. 29:2000;169-198
2. Aguinaldo A.M.A, Turbeville J.M, Linford L.S, Rivera M.C, Garey J.R, Raff R.A, Lake J.A. Evidence for a clade of nematodes, arthropods and other moulting animals. Nature (London). 387:1997;489-492
3. Bergquist P.R, de Cook S.C. Family Ianthellidae Hyatt, 1875. Hooper J.N.A, van Soest R.W.M. Systema Porifera: A Guide to the Classification of Sponges. vol. 1:2002;1089-1093 Kluwer Academic/Plenum Publishers, New York
4. Borchiellini C, Manuel M, Alivon E, Boury-Esnault N, Vacelet J, Le Parco Y. Sponge paraphyly and the origin of Metazoa. J. Evol. Biol. 14:2001;171-179
5. Boury-Esnault N, Ereskovsky A.V, Bézac C, Tokina D.B. Larval development in Homoscleromorpha (Porifera, Demospongiae). Invert. Biol. 122:2003;187-202
6. Boury-Esnault N, Rützler K. Thesaurus of Terms for Sponges. 1997;Smithsonian Press, Washington. vol. 55
7. Boute N, Exposito J.Y, Boury-Esnault N, Vacelet J, Noro N, Miyazaki K, Yoshigato K, Garrone R. Type IV collagen in sponges, the missing link in basement membrane ubiquity. Biol. Cell. 88:1996;37-44
8. Bowerbank, J.S., 1864. A Monograph of the British Spongiadae. The Ray Society, vol. 1. Robert Hardwicke, London
9. Cavalier-Smith T, Allsopp M.T.E.P, Chao E.E, Boury-Esnault N, Vacelet J. Sponge phylogeny, animal monophyly, and the origin of the nervous system: 18S rRNA evidence. Can. J. Zool. 74:1996;2031-2045
10. Chombard, C., 1998. Les Demospongiae à asters: essai de phylogénie moléculaire. Homologie du caractère "aster." Ph.D. Thesis, Museum national d'Histoire naturelle de Paris, Paris
11. Chombard C, Boury-Esnault N. Good congruence between morphology and molecular phylogeny of Hadromerida, or how to bother sponge taxonomists. Mem. Queensl. Mus. 44:1999;100
12. Chombard C, Tillier A, Boury-Esnault N, Vacelet J. Polyphyly of "sclerosponges" (Porifera, Demospongiae) supported by 28S ribosomal sequences. Biol. Bull. (Woods Hole). 193:1997;359-367
13. Chombard C, Boury-Esnault N, Tillier S. Reassesment of homology of morphological characters in tetractinellid sponges based on molecular data. Syst. Biol. 47:1998;351-366
14. Christen R, Ratto A, Baroin A, Perasso R, Grell K.G, Adoutte A. An analysis of the origin of metazoans, using comparisons of partial sequences of the 28S rRNA, reveals an early emergence of triploblasts. Embo J. 10:1991;499-503
15. Collins A.G. Evaluating multiple alternative hypotheses for the origin of bilateria: an analysis of 18S rRNA molecular evidence. Proc. Natl. Acad. Sci. USA. 95:1998;15458-15463
16. Collins A.G, Valentine J.W. Defining phyla: evolutionary pathways to metazoan body plans. Evol. Dev. 3:2001;432-442
17. Cunningham C, Zhu W.H, Hillis D.M. Best-fit maximum likelihood models for phylogenetic inference: empirical tests with known phylogenies. Evolution. 52:1998;978-987
18. Dendy A. The tetraxonid sponge-spicule: a study in evolution. Acta zool. 2:1921;95-152
19. Dendy A. On an orthogenetic series of growth forms in certain tetraxonid sponge spicules. Proc. R. Soc. London. 97:1924;243-250
20. De Vos L, Rützler K, Boury-Esnault N, Donadey C, Vacelet J. Atlas de morphologie des Eponges - Atlas of Sponge Morphology. 1991;Smithsonian Institution Press, Washington. vol. 117
21. Ereskovsky A.V, Boury-Esnault N. Cleavage pattern in Oscarella species (Porifera, Demospongiae, Homoscleromorpha), transmission of maternal cells and symbiotic bacteria. J. Nat. Hist. 36:2002;1761-1775
22. Gallissian M.-F, Vacelet J. Ultrastructure de quelques stades de l'ovogenèse de spongiaires du genre Verongia (Dictyoceratida). Ann. Sci. Nat. Zool. Biol. Anim. 18:1976;381-404
23. Hooper J.N.A, van Soest R.W.M. Class Demospongiae Sollas, 1885. Hooper J.N.A, van Soest R.W.M. Systema Porifera: A Guide to the Classification of Sponges. vol. 1:2002;15-18 Kluwer Academic/Plenum Publishers, New York
24. Johnston G. A History of British Sponges and Lithophytes. 1842;W.H. Lizard, Edinburgh
25. Kobayashi M, Takahashi M, Wada H, Satoh N. Molecular phylogeny inferred from sequences of small subunit ribosomal DNA, supports the monophyly of the Metazoa. Zool. Sci. 10:1993;827-833
26. Lafay B, Boury-Esnault N, Vacelet J, Christen R. An analysis of partial 28S ribosomal RNA sequences suggests early radiations of sponges. Biosystems. 28:1992;139-151
27. de Laubenfels, M.W., 1936. A discussion of the sponge fauna of the Dry Tortugas in particular and the West Indies in general, with material for a revision of the families and orders of the Porifera. Publ. Carnegie Inst. Washington, Pap. Tortugas Lab. 30, pp. 1-225
28. Lévi C. Etude des Halisarca de Roscoff. Embryologie et systématique des démosponges. Arch. Zool. exp. gén. 93:1956;1-184
29. Lévi, C., 1973. Systématique de la classe des Demospongiaria (Démosponges). In: Grassé, P.P. (Ed.), Spongiaires, vol. 3(1). Masson, Paris, pp. 577-632
30. Liaci L, Sciscioli M. Modalita di riproduzione sessuale di alcune poecilosclerina (Porifera). Atti. Soc. Pelor. Scien. fis. mat. nat. 31:1975;109-114
31. Maddison W.P, Maddison D.R. Interactive analysis of phylogeny and character evolution using the computer program MacClade. Folia Primatol. 53:1989;109-202
32. Maddison W.P, Maddison D.R. MacClade, Version 3.0. 1992;Sinauer, Sunderland, MA
33. Manuel M, Borchiellini C, Alivon E, Le Parco Y, Vacelet J, Boury-Esnault N. Phylogeny and evolution of Calcareous Sponges: monophyly of Calcinea and Calcaronea, high level of morphological homoplasy, and the primitive nature of axial symmetry. Syst. Biol. 52:2003;311-333
34. Marshall W. Ideen ueber die Verwandtschaftsverhältnisse der Hexactinelliden. Z. Wiss Zool. 27:1876;113-136
35. McCormack G.P, Erpenbeck D, van Soest R.W.M. Major discrepancy between phylogenetic hypotheses based on molecular and morphological criteria within the Order Haplosclerida (Phylum Porifera: Class Demospongiae). J. Zool. Syst. Evol. Res. 40:2002;237-240
36. Medina M, Collins A.G, Silberman J.D, Sogin M.L. Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA. Proc. Natl. Acad. Sci. USA. 98:2001;9707-9712
37. Meewis H. Contribution à l'étude de l'embryogé nèse des Myxospongidae: Halisarca lobularis (Schmidt). Arch. Biol. Liège. 50:1938;1-66
38. Minchin, E.A., 1900. The Porifera and Coelenterata. A Treatise on Zoology, vol. 2. Adam and Charles Black, London
39. Peterson K.J, Addis J.S. Clypeatula cooperensis gen., sp. n., a new freshwater sponge (Porifera, Spongillidae) from the Rocky Mountains of Montana, USA. Zool. Scr. 29:2000;265-274
40. de Queiroz K, Gauthier J. Toward a phylogenetic system of biological nomenclature. Tree. 9:1994;27-30
41. Reid R.E.H. Tetraxons and demosponge phylogeny. Fry W.G. The Biology of the Porifera. vol. 25:1970;63-90 Academic Press, London
42. Reiswig H.M. The axial symmetry of sponge spicules and its phylogenetic significance. Cah. Biol. Mar. 12:1971;505-514
43. Reiswig H.M. Natural gamete release and oviparity in Caribbean Demospongiae. Harrison F.W, Cowden R.R. Aspect of Sponge Biology. 1976;99-112 Academic Press, New York
44. Ridley, O.S., Dendy, A., 1887. Report on the Monaxonida collected by H.M.S. Challenger during the years 1873-1876. Report on the Scientific Results of the voyage of H.M.S. Challenger, vol. 20. Majesty's stationery Office, London
45. Schmidt O. Die Spongien des Adriatischen Meeres. 1862;Wilhelm Engelmann, Leipzig
46. Schmidt O. Grundzüge einer Spongien Fauna des Atlantischen Gebietes. 1870;Wilhelm Engelmann, Leipzig
47. Schulze F.E. Untersuchungen über den Bau und die Entwicklung der Spongien. Die Plakiniden. Z. Wiss. Zool. 34:1880;407-451
48. van Soest R.W.M. Demosponge higher taxa classification re-examined. Reitner J, Keupp H. Fossil and Recent Sponges. 1991;54-71 Springer-Verlag, Berlin
49. Solé-Cava A.M, Boury-Esnault N. Patterns of intra and interspecific divergence in marine sponges. Mem. Queensl. Mus. 44:1999;591-602
50. Sollas W.J. The sponge fauna of Norway; a report on the Rew. A.M. Norman's Collection of sponges from the Norwegian coast. Ann. Mag. Nat. Hist. 9:1882;141-165
51. Sollas W.J. A classification of the Sponges. Sci. Proc. R. Dublin Soc. 5:1885;112
52. Sollas, W.J., 1888. Report on the Tetractinellida collected by H.M.S. Challenger during the years 1873-1876. Report on the Scientific Results of the voyage of H.M.S. Challenger, vol. 25. Majesty's stationery Office, London
53. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Version 4. 2002;Sinauer Associates, Sunderland, MA
54. Topsent E. Application de la taxonomie actuelle à une collection de spongiaires du banc de Campêche et de la Guadeloupe décrites précédemment. Mém. Soc. Zool. France. 7:1894;27-36
55. Topsent E. Spongiaires de l'Atlantique et de la Méditerrané e, provenant des croisières du prince Albert Ier de Monaco. Résult. Camp. Sci. Albert I Monaco. 74:1928;1-376
56. Vacelet J, Borchiellini C, Perez T, Bultel-Poncé V, Brouard J.-P, Guyot M. Morphological, chemical, and biochemical characterization of a new species of sponges without skeleton (Porifera, Demospongiae) from the Mediterranean Sea. Zoosystema. 22:2000;313-326
57. Uriz M-J, Turon X, Becerro M.A, Agell G. Siliceous spicules and skeleton frameworks in sponges: origin, diversity, ultrastructure patterns, and biological functions. Microsc. Res. Techn. 62:2003;279-299
58. Zittel, K.A., 1878. Zur Stammes-Geschichte der Spongien, München
59. Zrzavy J, Mihulka S, Kepka P, Bezdek A. Phylogeny of the Metazoa based on morphological and 18S ribosomal DNA evidence. Cladistics. 14:1998;249-285