메뉴 건너뛰기




Volumn 20, Issue 5, 2003, Pages 735-747

The basic helix-loop-helix transcription factor family in plants: A genome-wide study of protein structure and functional diversity

Author keywords

Arabidopsis thaliana; bHLH; Genomics; Transcription control

Indexed keywords

COMPLEMENTARY DNA; HELIX LOOP HELIX PROTEIN; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

EID: 0037694799     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg088     Document Type: Article
Times cited : (859)

References (84)
  • 1
    • 0031252084 scopus 로고    scopus 로고
    • Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression
    • Abe, H., K. Yamaguchi-Shinozaki, T. Urao, T. Iwasaki, D. Hosokawa, and K. Shinizaki. 1997. Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell 9:1859-1868.
    • (1997) Plant Cell , vol.9 , pp. 1859-1868
    • Abe, H.1    Yamaguchi-Shinozaki, K.2    Urao, T.3    Iwasaki, T.4    Hosokawa, D.5    Shinizaki, K.6
  • 3
    • 0032993292 scopus 로고    scopus 로고
    • Crabs Claw and Spatula, two Arabidopsis genes that control carpel development in parallel with AGAMOUS
    • Alvarez, J., and D. R. Smyth. 1999. Crabs Claw and Spatula, two Arabidopsis genes that control carpel development in parallel with AGAMOUS. Development 126:2377-2386.
    • (1999) Development , vol.126 , pp. 2377-2386
    • Alvarez, J.1    Smyth, D.R.2
  • 4
    • 0031008399 scopus 로고    scopus 로고
    • A natural classification of the basic helix-loop-helix class of transcription factors
    • Atchley, W. R., and W. M. Fitch. 1997. A natural classification of the basic helix-loop-helix class of transcription factors. Proc. Natl. Acad. Sci. USA 94:5172-5176.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 5172-5176
    • Atchley, W.R.1    Fitch, W.M.2
  • 5
    • 0032925848 scopus 로고    scopus 로고
    • Positional dependence, cliques, and predictive motifs in the bHLH protein domain
    • Atchley, W. R., W. Terhalle, and A. Dress. 1999. Positional dependence, cliques, and predictive motifs in the bHLH protein domain. J. Mol. Evol. 48:501-16.
    • (1999) J. Mol. Evol. , vol.48 , pp. 501-516
    • Atchley, W.R.1    Terhalle, W.2    Dress, A.3
  • 8
    • 0025484183 scopus 로고
    • The yeast regulatory gene Pho4 encodes a helix-loop-helix motif
    • Berben, G., M. Legrain, V. Gilliquet, and F. Hilger. 1990. The yeast regulatory gene Pho4 encodes a helix-loop-helix motif. Yeast 6:451-454.
    • (1990) Yeast , vol.6 , pp. 451-454
    • Berben, G.1    Legrain, M.2    Gilliquet, V.3    Hilger, F.4
  • 10
    • 0033891353 scopus 로고    scopus 로고
    • Extensive duplication and reshuffling in the Arabidopsis genome
    • Blanc, G., A. Barakat, R. Guyot, R. Cooke, and M. Delseny. 2000. Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12:1093-1101.
    • (2000) Plant Cell , vol.12 , pp. 1093-1101
    • Blanc, G.1    Barakat, A.2    Guyot, R.3    Cooke, R.4    Delseny, M.5
  • 11
    • 0024842621 scopus 로고
    • Conformational energy analysis of the leucine repeat regions of C/EBP, GCN4, and the proteins of the myc, jun, and fos oncogenes
    • Brandt-Rauf, P. W., M. R. Pincus, J. M. Chen, and G. Lee. 1989. Conformational energy analysis of the leucine repeat regions of C/EBP, GCN4, and the proteins of the myc, jun, and fos oncogenes. J. Prot. Chem. 8:679-688.
    • (1989) J. Prot. Chem. , vol.8 , pp. 679-688
    • Brandt-Rauf, P.W.1    Pincus, M.R.2    Chen, J.M.3    Lee, G.4
  • 12
    • 0027994093 scopus 로고
    • The leucine zipper is necessary for stabilizing a dimer of the helix-loop-helix transcription factor USF but not for maintenance of an elongated conformation
    • Bresnick, E. H., and G. Felsenfeld. 1994. The leucine zipper is necessary for stabilizing a dimer of the helix-loop-helix transcription factor USF but not for maintenance of an elongated conformation. J. Biol. Chem. 269:21110-21116.
    • (1994) J. Biol. Chem. , vol.269 , pp. 21110-21116
    • Bresnick, E.H.1    Felsenfeld, G.2
  • 13
    • 0031569798 scopus 로고    scopus 로고
    • The crystal structure of an intact human Max-DNA complex: New insights into mechanisms of transcriptional control
    • Brownlie, P., T. Ceska, M. Lamers, C. Romier, G. Stier, H. Teo, and D. Suck. 1997. The crystal structure of an intact human Max-DNA complex: new insights into mechanisms of transcriptional control. Structure 5:509-520.
    • (1997) Structure , vol.5 , pp. 509-520
    • Brownlie, P.1    Ceska, T.2    Lamers, M.3    Romier, C.4    Stier, G.5    Teo, H.6    Suck, D.7
  • 14
    • 0030220475 scopus 로고    scopus 로고
    • The maize repressor-like gene intensifier1 shares homology with the r1-b1 multigene family of transcription factors and exhibits missplicing
    • Burr, F. A., B. Burr, B. E. Scheffler, M. Blewitt, U. Wienand, and E. C. Matz. 1996. The maize repressor-like gene intensifier1 shares homology with the r1-b1 multigene family of transcription factors and exhibits missplicing. Plant Cell 8:1249-1259.
    • (1996) Plant Cell , vol.8 , pp. 1249-1259
    • Burr, F.A.1    Burr, B.2    Scheffler, B.E.3    Blewitt, M.4    Wienand, U.5    Matz, E.C.6
  • 15
    • 0030982250 scopus 로고    scopus 로고
    • Neurospora wc-1 and wc-2: Transcription, photoresponses, and the origins of circadian rhythmicity
    • Crosthwaite, S. K., J. C. Dunlap, and J. J. Loros. 1997. Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity. Science 276:763-769.
    • (1997) Science , vol.276 , pp. 763-769
    • Crosthwaite, S.K.1    Dunlap, J.C.2    Loros, J.J.3
  • 16
    • 0033119581 scopus 로고    scopus 로고
    • The TCP domain: A motif found in proteins regulating plant growth and development
    • Cubas, P., N. Lauter, J. Doebley, and E. Coen. 1999. The TCP domain: a motif found in proteins regulating plant growth and development. Plant J. 18:215-222.
    • (1999) Plant J. , vol.18 , pp. 215-222
    • Cubas, P.1    Lauter, N.2    Doebley, J.3    Coen, E.4
  • 17
    • 0031149426 scopus 로고    scopus 로고
    • RAP-1 is an Arabidopsis MYC-like R protein homologue that binds to G-box sequence motifs
    • de Pater, S., K. Pham, J. Memelink, and J. Kijne. 1997. RAP-1 is an Arabidopsis MYC-like R protein homologue that binds to G-box sequence motifs. Plant Mol. Biol. 34:169-174.
    • (1997) Plant Mol. Biol. , vol.34 , pp. 169-174
    • De Pater, S.1    Pham, K.2    Memelink, J.3    Kijne, J.4
  • 18
    • 0028329080 scopus 로고
    • Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer
    • Ellenberger, T., D. Fass, M. Arnaud, and S. C. Harrison. 1994. Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer. Genes Dev. 8:970-980.
    • (1994) Genes Dev. , vol.8 , pp. 970-980
    • Ellenberger, T.1    Fass, D.2    Arnaud, M.3    Harrison, S.C.4
  • 20
    • 0034665886 scopus 로고    scopus 로고
    • HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction
    • Fairchild, C. D., M. A. Schumaker, and P. H. Quail. 2000. HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes Dev. 14:2377-2391.
    • (2000) Genes Dev. , vol.14 , pp. 2377-2391
    • Fairchild, C.D.1    Schumaker, M.A.2    Quail, P.H.3
  • 23
    • 0027910469 scopus 로고
    • Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain
    • Ferré-D'Amaré, A. R., G. C. Prendergast, E. B. Ziff, and S. K. Burley. 1993. Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature 363:38-45.
    • (1993) Nature , vol.363 , pp. 38-45
    • Ferré-D'Amaré, A.R.1    Prendergast, G.C.2    Ziff, E.B.3    Burley, S.K.4
  • 24
    • 0025861470 scopus 로고
    • The duplicated chalcone synthase genes C2 and Whp (white pollen) of Zea mays are independently regulated; evidence for translational control of Whp expression by the anthocyanin intensifying gene in
    • Franken, P., U. Niesbach-Klösgen, U. Weydermann, L. Maréchal-Drouard, H. Saedler, and U. Wienand. 1991. The duplicated chalcone synthase genes C2 and Whp (white pollen) of Zea mays are independently regulated; evidence for translational control of Whp expression by the anthocyanin intensifying gene in. EMBO J. 10:2605-2612.
    • (1991) EMBO J. , vol.10 , pp. 2605-2612
    • Franken, P.1    Niesbach-Klösgen, U.2    Weydermann, U.3    Maréchal-Drouard, L.4    Saedler, H.5    Wienand, U.6
  • 25
    • 0026317067 scopus 로고
    • Heterodimers of myogenic helix-loop-helix regulatory factors and E12 bind a complex element governing myogenic induction of the avian cardiac alpha-actin promoter
    • French, B. A., K. L. Chow, E. N. Olson, and R. J. Schwartz. 1991. Heterodimers of myogenic helix-loop-helix regulatory factors and E12 bind a complex element governing myogenic induction of the avian cardiac alpha-actin promoter. Mol. Cell. Biol. 11:2439-2450.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 2439-2450
    • French, B.A.1    Chow, K.L.2    Olson, E.N.3    Schwartz, R.J.4
  • 26
    • 0036859947 scopus 로고    scopus 로고
    • Three redundant brassinosteroid early response genes encode putative bhlh transcription factors required for normal growth
    • Friedrichsen, D. M., J. Nemhauser, T. Muramitsu, J. N. Maloof, J. Alonso, J. R. Ecker, M. Furuya, and J. Chory. 2002. Three redundant brassinosteroid early response genes encode putative bhlh transcription factors required for normal growth. Genetics 162:1445-1456.
    • (2002) Genetics , vol.162 , pp. 1445-1456
    • Friedrichsen, D.M.1    Nemhauser, J.2    Muramitsu, T.3    Maloof, J.N.4    Alonso, J.5    Ecker, J.R.6    Furuya, M.7    Chory, J.8
  • 27
    • 0024212067 scopus 로고
    • Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer
    • Frohman, M. A., M. K. Dush, and G. R. Martin. 1988. Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. USA 85:8998-9002.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 8998-9002
    • Frohman, M.A.1    Dush, M.K.2    Martin, G.R.3
  • 28
    • 0026638942 scopus 로고
    • Functional analysis of the transcriptional activator encoded by the maize B gene: Evidence for a direct functional interaction between two classes of regulatory proteins
    • Goff, S. A., K. C. Cone, and V. L. Chandler. 1992. Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins. Genes Dev. 6:864-675.
    • (1992) Genes Dev. , vol.6 , pp. 864-675
    • Goff, S.A.1    Cone, K.C.2    Chandler, V.L.3
  • 29
    • 0026573695 scopus 로고
    • A common gene regulates pigmentation pattern in diverse plant species
    • Goodrich, J., R. Carpenter, and E. S. Coen. 1992. A common gene regulates pigmentation pattern in diverse plant species. Cell 68:955-964.
    • (1992) Cell , vol.68 , pp. 955-964
    • Goodrich, J.1    Carpenter, R.2    Coen, E.S.3
  • 30
    • 0034610361 scopus 로고    scopus 로고
    • Identification of the residues in the Myb domain of maize C1 that specify the interaction with the bHLH cofactor R
    • Grotewold, E., M. B. Sainz, L. Tagliani, J. M. Hernandez, B. Bowen, and V. L. Chandler. 2000. Identification of the residues in the Myb domain of maize C1 that specify the interaction with the bHLH cofactor R. Proc. Natl. Acad. Sci. USA 97:13579-13584.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 13579-13584
    • Grotewold, E.1    Sainz, M.B.2    Tagliani, L.3    Hernandez, J.M.4    Bowen, B.5    Chandler, V.L.6
  • 31
    • 0033545992 scopus 로고    scopus 로고
    • poc1: An Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein
    • Halliday, K. J., M. Hudson, M. Ni, M. Qin, and P. H. Quail. 1999. poc1: an Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein. Proc. Natl. Acad. Sci. USA 96:5832-5837.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 5832-5837
    • Halliday, K.J.1    Hudson, M.2    Ni, M.3    Qin, M.4    Quail, P.H.5
  • 32
    • 0035035187 scopus 로고    scopus 로고
    • Spatula, a gene that controls development of carpel margin tissues in Arabidopsis, encodes a bHLH protein
    • Heisler, M. G., A. Atkinson, Y. H. Bylstra, R. Walsh, and D. R. Smyth. 2001. Spatula, a gene that controls development of carpel margin tissues in Arabidopsis, encodes a bHLH protein. Development 128:1089-1098.
    • (2001) Development , vol.128 , pp. 1089-1098
    • Heisler, M.G.1    Atkinson, A.2    Bylstra, Y.H.3    Walsh, R.4    Smyth, D.R.5
  • 33
    • 0037093501 scopus 로고    scopus 로고
    • PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis
    • Huq, E., and P. H. Quail. 2002. PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J. 21:2441-2450.
    • (2002) EMBO J. , vol.21 , pp. 2441-2450
    • Huq, E.1    Quail, P.H.2
  • 35
    • 0003254332 scopus 로고    scopus 로고
    • A novel basic region/helix-loop-helix protein binds to a G-box motif CACGTG of the bean seed storage protein beta-phaseolin gene
    • Kawagoe, Y., and N. Murai. 1996. A novel basic region/helix-loop-helix protein binds to a G-box motif CACGTG of the bean seed storage protein beta-phaseolin gene. Plant Sci. 116:47-57.
    • (1996) Plant Sci. , vol.116 , pp. 47-57
    • Kawagoe, Y.1    Murai, N.2
  • 36
    • 0030916198 scopus 로고    scopus 로고
    • PAS, present, and future: Clues to the origins of circadian clocks
    • Kay, S. A. 1997. PAS, present, and future: clues to the origins of circadian clocks. Science 276:753-754.
    • (1997) Science , vol.276 , pp. 753-754
    • Kay, S.A.1
  • 37
    • 0037673602 scopus 로고
    • The allelic state at intensifier influences accumulation of UDP glucose: Flavonoid 3-O-glucosyltransferase in maize
    • Klein, A. S., and O. E. Nelson, Jr. 1983. The allelic state at intensifier influences accumulation of UDP glucose: flavonoid 3-O-glucosyltransferase in maize. Phytochemistry 22:2612-2634.
    • (1983) Phytochemistry , vol.22 , pp. 2612-2634
    • Klein, A.S.1    Nelson O.E., Jr.2
  • 38
    • 0031225050 scopus 로고    scopus 로고
    • PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene
    • Kosugi, S., and Y. Ohashi. 1997. PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene. Plant Cell 9:1607-1619.
    • (1997) Plant Cell , vol.9 , pp. 1607-1619
    • Kosugi, S.1    Ohashi, Y.2
  • 39
    • 0032191287 scopus 로고    scopus 로고
    • Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana
    • Kranz, H. D., M. Denekamp, R. Greco et al. (14 co-authors). 1998. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Plant J. 16:263-276.
    • (1998) Plant J. , vol.16 , pp. 263-276
    • Kranz, H.D.1    Denekamp, M.2    Greco, R.3
  • 40
    • 18744421788 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human basic helix-loop-helix proteins
    • Ledent, V., O. Paquet, and M. Vervoort. 2002. Phylogenetic analysis of the human basic helix-loop-helix proteins. Genome Biol. 3(6):1-18.
    • (2002) Genome Biol. , vol.3 , Issue.6 , pp. 1-18
    • Ledent, V.1    Paquet, O.2    Vervoort, M.3
  • 41
    • 0035001937 scopus 로고    scopus 로고
    • The basic helix-loop-helix protein family: Comparative genomics and phylogenetic analysis
    • Ledent, V., and M. Vervoort. 2001. The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis. Genome Res. 11:754-770.
    • (2001) Genome Res. , vol.11 , pp. 754-770
    • Ledent, V.1    Vervoort, M.2
  • 42
    • 0034981103 scopus 로고    scopus 로고
    • Developmentally distinct MYB genes encode functionally equivalent proteins in Arabidopsis
    • Lee, M. M., and J. Schiefelbein. 2001. Developmentally distinct MYB genes encode functionally equivalent proteins in Arabidopsis. Development 128:1539-1546.
    • (2001) Development , vol.128 , pp. 1539-1546
    • Lee, M.M.1    Schiefelbein, J.2
  • 43
    • 0031014876 scopus 로고    scopus 로고
    • White collar 2, a partner in blue-light signal transduction, controlling expression of light-regulated genes in Neurospora crassa
    • Linden, H., and G. Macino. 1997. White collar 2, a partner in blue-light signal transduction, controlling expression of light-regulated genes in Neurospora crassa. EMBO J. 16:98-109.
    • (1997) EMBO J. , vol.16 , pp. 98-109
    • Linden, H.1    Macino, G.2
  • 44
    • 0037108975 scopus 로고    scopus 로고
    • The tomato fer gene encoding a bHLH protein controls iron-uptake responses in roots
    • Ling, H.-Q., P. Bauer, Z. Bereczky, B. Keller, and M. W. Ganal. 2002. The tomato fer gene encoding a bHLH protein controls iron-uptake responses in roots. Proc. Natl. Acad. Sci. USA 99:13938-13943.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13938-13943
    • Ling, H.-Q.1    Bauer, P.2    Bereczky, Z.3    Keller, B.4    Ganal, M.W.5
  • 46
    • 0027057528 scopus 로고
    • Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1
    • Lloyd, A. M., V. Walbot, and R. W. Davis. 1992. Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1. Science 258:1773-1775.
    • (1992) Science , vol.258 , pp. 1773-1775
    • Lloyd, A.M.1    Walbot, V.2    Davis, R.W.3
  • 47
    • 0024722623 scopus 로고
    • Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the mychomology region
    • Ludwig, S. R., L. F. Habera, S. L. Dellaporta, and S. R. Wessler. 1989. Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the mychomology region. Proc. Natl. Acad. Sci. USA 86:7092-7096.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 7092-7096
    • Ludwig, S.R.1    Habera, L.F.2    Dellaporta, S.L.3    Wessler, S.R.4
  • 48
    • 0030271515 scopus 로고    scopus 로고
    • Coiled coils: New structures and new functions
    • Lupas, A. 1996. Coiled coils: new structures and new functions. Trends Biochem. Sci. 21:375-382.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 375-382
    • Lupas, A.1
  • 49
    • 0036008343 scopus 로고    scopus 로고
    • The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants
    • Makino, S., A. Matsushika, M. Kojima, T. Yamashino, and T. Mizuno. 2002. The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants. Plant Cell Physiol. 43:58-69.
    • (2002) Plant Cell Physiol. , vol.43 , pp. 58-69
    • Makino, S.1    Matsushika, A.2    Kojima, M.3    Yamashino, T.4    Mizuno, T.5
  • 50
    • 0029005260 scopus 로고
    • Analysis of the Myc and Max interaction specificity with lambda repressor-HLH domain fusions
    • Marchetti, A., M. Abril-Marti, B. Illi, G. Cesareni, and S. Nasi. 1995. Analysis of the Myc and Max interaction specificity with lambda repressor-HLH domain fusions. J. Mol. Biol. 248:541-550.
    • (1995) J. Mol. Biol. , vol.248 , pp. 541-550
    • Marchetti, A.1    Abril-Marti, M.2    Illi, B.3    Cesareni, G.4    Nasi, S.5
  • 51
    • 0041029474 scopus 로고    scopus 로고
    • Direct targeting of light signals to a promoter element-bound transcription factor
    • Martinez-Garcia, J., E. Huq, and P. Quail. 2000. Direct targeting of light signals to a promoter element-bound transcription factor. Science 288:859-863.
    • (2000) Science , vol.288 , pp. 859-863
    • Martinez-Garcia, J.1    Huq, E.2    Quail, P.3
  • 52
    • 0028859591 scopus 로고
    • The G-box: A ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins
    • Menkens, A. E., U. Schindler, and A. R. Cashmore. 1995. The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins. Trends Biochem. Sci. 20:506-510.
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 506-510
    • Menkens, A.E.1    Schindler, U.2    Cashmore, A.R.3
  • 54
    • 0024554495 scopus 로고
    • A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins
    • Murre, C., P. S. McCaw, and D. Baltimore. 1989. A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins. Cell 56:777-783.
    • (1989) Cell , vol.56 , pp. 777-783
    • Murre, C.1    McCaw, P.S.2    Baltimore, D.3
  • 55
    • 0026314893 scopus 로고
    • The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development
    • Nambu, J. R., J. O. Lewis, K. A. Wharton Jr., and S. T. Crews. 1991. The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development. Cell 67:1157-1167.
    • (1991) Cell , vol.67 , pp. 1157-1167
    • Nambu, J.R.1    Lewis, J.O.2    Wharton K.A., Jr.3    Crews, S.T.4
  • 56
    • 0033768615 scopus 로고    scopus 로고
    • The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in arabidopsis siliques
    • Nesi, N., I. Debeaujon, C. Jond, G. Pelletier, M. Caboche, and L. Lepiniec. 2000. The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in arabidopsis siliques. Plant Cell 12:1863-1878.
    • (2000) Plant Cell , vol.12 , pp. 1863-1878
    • Nesi, N.1    Debeaujon, I.2    Jond, C.3    Pelletier, G.4    Caboche, M.5    Lepiniec, L.6
  • 58
    • 0030087966 scopus 로고    scopus 로고
    • Stress responses in alfalfa (Medicago sativa L.). XX. Transcriptional activation of phenylpropanoid pathway genes in elicitor-induced cell suspension cultures
    • Ni, W., T. Fahrendorf, G. M. Ballance, C. Lamb, and R. A. Dixon. 1996. Stress responses in alfalfa (Medicago sativa L.). XX. Transcriptional activation of phenylpropanoid pathway genes in elicitor-induced cell suspension cultures. Plant Mol. Biol. 30:427-438.
    • (1996) Plant Mol. Biol. , vol.30 , pp. 427-438
    • Ni, W.1    Fahrendorf, T.2    Ballance, G.M.3    Lamb, C.4    Dixon, R.A.5
  • 59
    • 0032567039 scopus 로고    scopus 로고
    • PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein
    • Ni, M., J. M. Tepperman, and P. H. Quail. 1998. PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein. Cell 95:657-667.
    • (1998) Cell , vol.95 , pp. 657-667
    • Ni, M.1    Tepperman, J.M.2    Quail, P.H.3
  • 60
    • 0033756404 scopus 로고    scopus 로고
    • GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1
    • Payne, C. T., F. Zhang, and A. M. Lloyd. 2000. GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1. Genetics 156:1349-1362.
    • (2000) Genetics , vol.156 , pp. 1349-1362
    • Payne, C.T.1    Zhang, F.2    Lloyd, A.M.3
  • 61
    • 0034066527 scopus 로고    scopus 로고
    • The developmental expression of the maize regulatory gene Hopi determines germination-dependent anthocyanin accumulation
    • Petroni, K., E. Cominelli, G. Consonni, G. Gusmaroli, G. Gavazzi, and C. Tonelli. 2000. The developmental expression of the maize regulatory gene Hopi determines germination-dependent anthocyanin accumulation. Genetics 155:323-336.
    • (2000) Genetics , vol.155 , pp. 323-336
    • Petroni, K.1    Cominelli, E.2    Consonni, G.3    Gusmaroli, G.4    Gavazzi, G.5    Tonelli, C.6
  • 62
    • 0029360720 scopus 로고
    • Seeing double: Appreciating genetic redundancy
    • Pickett, F. B., and D. R. Meeks-Wagner. 1995. Seeing double: appreciating genetic redundancy. Plant Cell 7:1347-1356.
    • (1995) Plant Cell , vol.7 , pp. 1347-1356
    • Pickett, F.B.1    Meeks-Wagner, D.R.2
  • 63
    • 0023683667 scopus 로고
    • How eukaryotic transcriptional activators work
    • Ptashne, M. 1988. How eukaryotic transcriptional activators work. Nature 335:683-689.
    • (1988) Nature , vol.335 , pp. 683-689
    • Ptashne, M.1
  • 64
    • 0032005926 scopus 로고    scopus 로고
    • Analysis of bHLH and MYB domain proteins: Species specific regulatory differences are caused by divergent evolution of target anthocyanin genes
    • Quattrocchio, F., J. F. Wing, K. van der Woude, J. N. M. Mol, and R. Koes. 1998. Analysis of bHLH and MYB domain proteins: species specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant J. 13:475-488.
    • (1998) Plant J. , vol.13 , pp. 475-488
    • Quattrocchio, F.1    Wing, J.F.2    Van der Woude, K.3    Mol, J.N.M.4    Koes, R.5
  • 65
    • 0027472051 scopus 로고
    • A new transcriptional-activation motif restricted to a class of helix-loop-helix proteins is functionally conserved in both yeast and mammalian cells
    • Quong, M. W., M. E. Massari, R. Zwart, and C. Murre. 1993. A new transcriptional-activation motif restricted to a class of helix-loop-helix proteins is functionally conserved in both yeast and mammalian cells. Mol. Cell. Biol. 13:792-800.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 792-800
    • Quong, M.W.1    Massari, M.E.2    Zwart, R.3    Murre, C.4
  • 66
    • 0026196125 scopus 로고
    • Cloning and nucleotide sequence of a cDNA encoding B-Peru, a regulatory protein of the anthocyanin pathway in maize
    • Radicella, J. P., D. Turks, and V. L. Chandler. 1991. Cloning and nucleotide sequence of a cDNA encoding B-Peru, a regulatory protein of the anthocyanin pathway in maize. Plant Mol. Biol. 17:127-130.
    • (1991) Plant Mol. Biol. , vol.17 , pp. 127-130
    • Radicella, J.P.1    Turks, D.2    Chandler, V.L.3
  • 67
    • 0035846542 scopus 로고    scopus 로고
    • The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence
    • Rajani, S., and V. Sundaresan. 2001. The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence. Curr. Biol. 11:1914-1922.
    • (2001) Curr. Biol. , vol.11 , pp. 1914-1922
    • Rajani, S.1    Sundaresan, V.2
  • 68
    • 0028305207 scopus 로고
    • The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis
    • Rerie, W. G., K. A. Feldmann, and M. D. Marks. 1994. The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis. Genes Dev. 8:1388-1399.
    • (1994) Genes Dev. , vol.8 , pp. 1388-1399
    • Rerie, W.G.1    Feldmann, K.A.2    Marks, M.D.3
  • 69
    • 0031845074 scopus 로고    scopus 로고
    • The AP2/EREBP family of plant transcription factors
    • Riechmann, J. L., and E. M. Meyerowitz. 1998. The AP2/EREBP family of plant transcription factors. Biol. Chem. 379:633-646.
    • (1998) Biol. Chem. , vol.379 , pp. 633-646
    • Riechmann, J.L.1    Meyerowitz, E.M.2
  • 70
    • 0033828167 scopus 로고    scopus 로고
    • A genomic perspective on plant transcription factors
    • Riechmann, J. L., and O. J. Ratcliffe. 2000. A genomic perspective on plant transcription factors. Curr. Opin. Plant Biol. 3:423-434.
    • (2000) Curr. Opin. Plant Biol. , vol.3 , pp. 423-434
    • Riechmann, J.L.1    Ratcliffe, O.J.2
  • 71
    • 0032077989 scopus 로고    scopus 로고
    • More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana
    • Romero, I., A. Fuertes, M. J. Benito, J. M. Malpical, A. Leyva, and J. Paz-Ares. 1998. More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J. 14:273-284.
    • (1998) Plant J. , vol.14 , pp. 273-284
    • Romero, I.1    Fuertes, A.2    Benito, M.J.3    Malpical, J.M.4    Leyva, A.5    Paz-Ares, J.6
  • 72
    • 0031127329 scopus 로고    scopus 로고
    • Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins
    • Sainz, M. B., E. Grotewold, and V. L. Chandler. 1997. Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins. Plant Cell 9:611-625.
    • (1997) Plant Cell , vol.9 , pp. 611-625
    • Sainz, M.B.1    Grotewold, E.2    Chandler, V.L.3
  • 73
    • 0036021398 scopus 로고    scopus 로고
    • Dominant alleles of the basic helix-loop-helix transcription factor ATR2 activate stress-responsive genes in Arabidopsis
    • Smolen, G. A., L. Pawlowski, S. E. Wilensky, and J. Bender. 2002. Dominant alleles of the basic helix-loop-helix transcription factor ATR2 activate stress-responsive genes in Arabidopsis. Genetics 161:1235-1246.
    • (2002) Genetics , vol.161 , pp. 1235-1246
    • Smolen, G.A.1    Pawlowski, L.2    Wilensky, S.E.3    Bender, J.4
  • 74
    • 0034527465 scopus 로고    scopus 로고
    • REP1, a basic helix-loop-helix protein, is required for a branch pathway of phytochrome A signaling in arabidopsis
    • Soh, M. S., Y. M. Kim, S. J. Han, and P. S. Song. 2000. REP1, a basic helix-loop-helix protein, is required for a branch pathway of phytochrome A signaling in arabidopsis. Plant Cell 12:2061-2074.
    • (2000) Plant Cell , vol.12 , pp. 2061-2074
    • Soh, M.S.1    Kim, Y.M.2    Han, S.J.3    Song, P.S.4
  • 75
    • 0033791934 scopus 로고    scopus 로고
    • Anthocyanin1 of petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes
    • Spelt, C., F. Quattrocchio, J. N. M. Mol, and R. Koes. 2000. Anthocyanin1 of petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes. Plant Cell 12:1619-1631.
    • (2000) Plant Cell , vol.12 , pp. 1619-1631
    • Spelt, C.1    Quattrocchio, F.2    Mol, J.N.M.3    Koes, R.4
  • 77
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 78
    • 0027968068 scopus 로고
    • Clustal_W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. Clustal_W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 79
    • 0027344303 scopus 로고
    • Isolation of putative defense-related genes from Arabidopsis thaliana and expression in fungal elicitor-treated cells
    • Trezzini, G. F., A. Horrichs, and I. E. Somssich. 1993. Isolation of putative defense-related genes from Arabidopsis thaliana and expression in fungal elicitor-treated cells. Plant Mol. Biol. 21:385-389.
    • (1993) Plant Mol. Biol. , vol.21 , pp. 385-389
    • Trezzini, G.F.1    Horrichs, A.2    Somssich, I.E.3
  • 80
    • 0030293564 scopus 로고    scopus 로고
    • Molecular cloning and characterization of a gene that encodes a MYC-related protein in Arabidopsis
    • Urao, T., K. Yamaguchishinozaki, N. Mitsukawa, D. Shibata, and K. Shinozaki. 1996. Molecular cloning and characterization of a gene that encodes a MYC-related protein in Arabidopsis. Plant Mol. Biol. 32:571-576.
    • (1996) Plant Mol. Biol. , vol.32 , pp. 571-576
    • Urao, T.1    Yamaguchishinozaki, K.2    Mitsukawa, N.3    Shibata, D.4    Shinozaki, K.5
  • 81
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • Vision, T. J., D. G. Brown, and S. D. Tanksley. 2000. The origins of genomic duplications in Arabidopsis. Science 290:2114-2117.
    • (2000) Science , vol.290 , pp. 2114-2117
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 82
    • 0029979174 scopus 로고    scopus 로고
    • A light-entrainment mechanism for the Drosophila circadian clock
    • Zeng, H., Z. Qian, M. P. Myers, and M. Rosbash. 1996. A light-entrainment mechanism for the Drosophila circadian clock. Nature 380:129-135.
    • (1996) Nature , vol.380 , pp. 129-135
    • Zeng, H.1    Qian, Z.2    Myers, M.P.3    Rosbash, M.4
  • 84
    • 0034700115 scopus 로고    scopus 로고
    • Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3
    • Zhu, Y., J. M. Tepperman, C. D. Fairchild, and P. H. Quail. 2000. Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3. Proc. Natl. Acad. Sci. USA 97:13419-13424.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 13419-13424
    • Zhu, Y.1    Tepperman, J.M.2    Fairchild, C.D.3    Quail, P.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.