SCOPUS 정보 검색 플랫폼

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 9, 2007, Pages 3177-3182

Near-native structure refinement using in vacuo energy minimization

(2) Summa, Christopher M a Levitt, Michael a

a STANFORD UNIVERSITY SCHOOL OF MEDICINE (United States)

Author keywords

Empirical potential; Knowledge based; Molecular mechanics potential; Protein; Protein structure refinement

Indexed keywords

ARTICLE; CALCULATION; ENERGY; ENERGY TRANSFER; MACROMOLECULE; MATHEMATICAL ANALYSIS; MATHEMATICAL MODEL; MOLECULAR BIOLOGY; MOLECULAR DYNAMICS; PREDICTION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

BIOPHYSICS; COMPUTATIONAL BIOLOGY; ENERGY TRANSFER; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEINS;

EID: 33847673583 PISSN: 00278424 EISSN: None Source Type: Journal
DOI: 10.1073/pnas.0611593104 Document Type: Article

Times cited : (131)

References (41)

1
- 1542316357
- Lattman E (2004) Proteins 54:611-615.
- (2004) Proteins , vol.54 , pp. 611-615
- Lattman, E.¹

2
- 14844360822
- Service R
- Service R (2005) Science 307:1554-1558.
- (2005) Science , vol.307 , pp. 1554-1558

3
- 0015968881
- Warme PK, Momany FA, Rumball SV, Tuttle RW, Scheraga HA (1974) Biochemistry 13:768-782.
- (1974) Biochemistry , vol.13 , pp. 768-782
- Warme, P.K.¹ Momany, F.A.² Rumball, S.V.³ Tuttle, R.W.⁴ Scheraga, H.A.⁵

4
- 30344475200
- Kryshtafovych A, Venclovas C, Fidelis K, Moult J (2005) Proteins 61(Suppl 7):225-236.
- (2005) Proteins , vol.61 , Issue.SUPPL. 7 , pp. 225-236
- Kryshtafovych, A.¹ Venclovas, C.² Fidelis, K.³ Moult, J.⁴

5
- 0037093644
- Krieger E, Koraimann G, Vriend G (2002) Proteins 47:393-402.
- (2002) Proteins , vol.47 , pp. 393-402
- Krieger, E.¹ Koraimann, G.² Vriend, G.³

6
- 10344223464
- Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G (2004) Proteins 57:678-683.
- (2004) Proteins , vol.57 , pp. 678-683
- Krieger, E.¹ Darden, T.² Nabuurs, S.B.³ Finkelstein, A.⁴ Vriend, G.⁵

7
- 33645792604
- Misura KMS, Chivian D, Rohl CA, Kim DE, Baker D (2006) Proc Natl Acad Sci USA 103:5361-5366.
- (2006) Proc Natl Acad Sci USA , vol.103 , pp. 5361-5366
- Misura, K.M.S.¹ Chivian, D.² Rohl, C.A.³ Kim, D.E.⁴ Baker, D.⁵

8
- 20344368593
- Donchev AG, Ozrin VD, Subbotin MV, Tarasov OV, Tarasov VI (2005) Proc Natl Acad Sci USA 102:7829-7834.
- (2005) Proc Natl Acad Sci USA , vol.102 , pp. 7829-7834
- Donchev, A.G.¹ Ozrin, V.D.² Subbotin, M.V.³ Tarasov, O.V.⁴ Tarasov, V.I.⁵

9
- 0014675222
- Levitt M, Lifson S (1969) J Mol Biol 46:269-279.
- (1969) J Mol Biol , vol.46 , pp. 269-279
- Levitt, M.¹ Lifson, S.²

10
- 0015972151
- Levitt M (1974) J Mol Biol 82:393-420.
- (1974) J Mol Biol , vol.82 , pp. 393-420
- Levitt, M.¹

11
- 0001398008
- Wang J, Cieplak P, Kollman PA (2000) J Comput Chem 21:1049-1074.
- (2000) J Comput Chem , vol.21 , pp. 1049-1074
- Wang, J.¹ Cieplak, P.² Kollman, P.A.³

12
- 20544435097
- Sorin EJ, Pande VS (2005) Biophys J 88:2472-2493.
- (2005) Biophys J , vol.88 , pp. 2472-2493
- Sorin, E.J.¹ Pande, V.S.²

13
- 0035913529
- Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL (2001) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 105:6474-6487.
- (2001) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys , vol.105 , pp. 6474-6487
- Kaminski, G.A.¹ Friesner, R.A.² Tirado-Rives, J.³ Jorgensen, W.L.⁴

14
- 0003544049
- Univ Publ House, Zurich
- van Gunsteren WF, Billeter SR, Eising AA, Hunenberger PH, Kruger P, Mark AE, Scott WRP, Tironi IG (1996) Biomolecular Simulation: The GROMOS96 Manual and User Guide (Univ Publ House, Zurich).
- (1996) Biomolecular Simulation: The GROMOS96 Manual and User Guide
- van Gunsteren, W.F.¹ Billeter, S.R.² Eising, A.A.³ Hunenberger, P.H.⁴ Kruger, P.⁵ Mark, A.E.⁶ Scott, W.R.P.⁷ Tironi, I.G.⁸

15
- 0029633167
- Levitt M, Hirshberg M, Sharon R, Daggett V (1995) Comput Phys Commun 91:215-231.
- (1995) Comput Phys Commun , vol.91 , pp. 215-231
- Levitt, M.¹ Hirshberg, M.² Sharon, R.³ Daggett, V.⁴

16
- 28044469278
- Li H, Zhou Y (2005) J Bioinform Comput Biol 3:1151-1170.
- (2005) J Bioinform Comput Biol , vol.3 , pp. 1151-1170
- Li, H.¹ Zhou, Y.²

17
- 0000197372
- Tirion MM (1996) Phys Rev Lett 77:1905-1908.
- (1996) Phys Rev Lett , vol.77 , pp. 1905-1908
- Tirion, M.M.¹

18
- 0032488962
- Samudrala R, Moult J (1998) J Mol Biol 275:895-916.
- (1998) J Mol Biol , vol.275 , pp. 895-916
- Samudrala, R.¹ Moult, J.²

19
- 0032410839
- Keskin O, Bahar I (1998) Fold Des 3:469-479.
- (1998) Fold Des , vol.3 , pp. 469-479
- Keskin, O.¹ Bahar, I.²

20
- 4344586564
- Wieman H, Tøndel K, Anderssen E, Drabløs F (2004) Mini Rev Med Chem 4:793-804.
- (2004) Mini Rev Med Chem , vol.4 , pp. 793-804
- Wieman, H.¹ Tøndel, K.² Anderssen, E.³ Drabløs, F.⁴

21
- 21644469377
- Mendez R, Leplae R, Lensink MF, Wodak SJ (2005) Proteins 60:150-169.
- (2005) Proteins , vol.60 , pp. 150-169
- Mendez, R.¹ Leplae, R.² Lensink, M.F.³ Wodak, S.J.⁴

22
- 2442677781
- Arakaki AK, Zhang Y, Skolnick J (2004) Bioinformatics 20:1087-1096.
- (2004) Bioinformatics , vol.20 , pp. 1087-1096
- Arakaki, A.K.¹ Zhang, Y.² Skolnick, J.³

23
- 22444436454
- Eyal E, Gerzon S, Potapov V, Edelman M, Sobolev V (2005) J Mol Biol 351:431-442.
- (2005) J Mol Biol , vol.351 , pp. 431-442
- Eyal, E.¹ Gerzon, S.² Potapov, V.³ Edelman, M.⁴ Sobolev, V.⁵

24
- 24644464131
- Summa CM, Levitt M, Degrado WF (2005) J Mol Biol 352:986-1001.
- (2005) J Mol Biol , vol.352 , pp. 986-1001
- Summa, C.M.¹ Levitt, M.² Degrado, W.F.³

25
- 0032080720
- Furuichi E, Koehl P (1998) Proteins 31:139-149.
- (1998) Proteins , vol.31 , pp. 139-149
- Furuichi, E.¹ Koehl, P.²

26
- 0029976427
- Thomas PD, Dill KA (1996) J Mol Biol 257:457-469.
- (1996) J Mol Biol , vol.257 , pp. 457-469
- Thomas, P.D.¹ Dill, K.A.²

27
- 0001064488
- BenNaim A (1997) J Chem Phys 107:3698-3706.
- (1997) J Chem Phys , vol.107 , pp. 3698-3706
- BenNaim, A.¹

28
- 0035882533
- Lu H, Skolnick J (2001) Proteins 44:223-232.
- (2001) Proteins , vol.44 , pp. 223-232
- Lu, H.¹ Skolnick, J.²

29
- 0025341310
- Sippl MJ (1990) J Mol Biol 213:859-883.
- (1990) J Mol Biol , vol.213 , pp. 859-883
- Sippl, M.J.¹

30
- 0036838311
- Zhou H, Zhou Y (2002) Protein Sci 11:2714-2726.
- (2002) Protein Sci , vol.11 , pp. 2714-2726
- Zhou, H.¹ Zhou, Y.²

31
- 0033977581
- Brenner SE, Koehl P, Levitt M (2000) Nucleic Acids Res 28:254-256.
- (2000) Nucleic Acids Res , vol.28 , pp. 254-256
- Brenner, S.E.¹ Koehl, P.² Levitt, M.³

32
- 0348129526
- Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE (2004) Nucleic Acids Res 32(Database issue):D189-D192.
- (2004) Nucleic Acids Res 32(Database issue)
- Chandonia, J.M.¹ Hon, G.² Walker, N.S.³ Lo Conte, L.⁴ Koehl, P.⁵ Levitt, M.⁶ Brenner, S.E.⁷

33
- 0028961335
- Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) J Mol Biol 247:536-540.
- (1995) J Mol Biol , vol.247 , pp. 536-540
- Murzin, A.G.¹ Brenner, S.E.² Hubbard, T.³ Chothia, C.⁴

34
- 0030777303
- Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM (1997) Structure (London) 5:1093-1108.
- (1997) Structure (London) , vol.5 , pp. 1093-1108
- Orengo, C.A.¹ Michie, A.D.² Jones, S.³ Jones, D.T.⁴ Swindells, M.B.⁵ Thornton, J.M.⁶

35
- 0022419152
- Levitt M, Sander C, Stern PS (1985) J Mol Biol 181:423-447.
- (1985) J Mol Biol , vol.181 , pp. 423-447
- Levitt, M.¹ Sander, C.² Stern, P.S.³

36
- 33646887390
- Liu DC, Nocedal J (1989) Math Programming B 45:503-528.
- (1989) Math Programming B , vol.45 , pp. 503-528
- Liu, D.C.¹ Nocedal, J.²

37
- 27344454932
- van der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJ (2005) J Comput Chem 26:1701-1718.
- (2005) J Comput Chem , vol.26 , pp. 1701-1718
- van der Spoel, D.¹ Lindahl, E.² Hess, B.³ Groenhof, G.⁴ Mark, A.E.⁵ Berendsen, H.J.⁶

38
- 0035789518
- Lindahl E, Hess B, van der Spoel D (2001) J Mol Model 7:306-317.
- (2001) J Mol Model , vol.7 , pp. 306-317
- Lindahl, E.¹ Hess, B.² van der Spoel, D.³

39
- 0029633168
- Berendsen HJC, van der Spoel D, van Drunen R (1995) Comput Phys Commun 91:43-56.
- (1995) Comput Phys Commun , vol.91 , pp. 43-56
- Berendsen, H.J.C.¹ van der Spoel, D.² van Drunen, R.³

40
- 0000125216
- Levitt M, Hirshberg M, Sharon R, Laidig KE, Daggett V (1997) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 101:5051-5061.
- (1997) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys , vol.101 , pp. 5051-5061
- Levitt, M.¹ Hirshberg, M.² Sharon, R.³ Laidig, K.E.⁴ Daggett, V.⁵

41
- 0034274870
- Gansner ER, North SC (2000) Softw Pract Exp 30:1203-1233.
- (2000) Softw Pract Exp , vol.30 , pp. 1203-1233
- Gansner, E.R.¹ North, S.C.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.