-
1
-
-
0029586759
-
Protein-protein interaction at crystal contacts
-
J. Janin, and F. Rodier Protein-protein interaction at crystal contacts Proteins: Struct. Funct. Genet. 23 1995 580 587
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.23
, pp. 580-587
-
-
Janin, J.1
Rodier, F.2
-
2
-
-
0030850230
-
Protein-protein crystal-packing contacts
-
O. Carugo, and P. Argos Protein-protein crystal-packing contacts Protein Sci. 6 1997 2261 2263
-
(1997)
Protein Sci.
, vol.6
, pp. 2261-2263
-
-
Carugo, O.1
Argos, P.2
-
3
-
-
0035914476
-
Conservation helps to identify biologically relevant crystal contacts
-
W.S.J. Valdar, and J.M. Thornton Conservation helps to identify biologically relevant crystal contacts J. Mol. Biol. 313 2001 399 416
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 399-416
-
-
Valdar, W.S.J.1
Thornton, J.M.2
-
4
-
-
0036785939
-
Induced structural changes of 7SL RNA during the assembly of human signal recognition particle
-
A. Kuglstatter, C. Oubridge, and K. Nagai Induced structural changes of 7SL RNA during the assembly of human signal recognition particle Nature Struct. Biol. 9 2002 740 744
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 740-744
-
-
Kuglstatter, A.1
Oubridge, C.2
Nagai, K.3
-
5
-
-
0028425473
-
Comparison of four independency determined structures of human recombinant interleukin-4
-
L.J. Smith, C. Redfield, R.A.G. Smith, C.M. Dobson, G.M. Clore, and A.M. Gronenborn Comparison of four independency determined structures of human recombinant interleukin-4 Nature Struct. Biol. 1 1994 301 310
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 301-310
-
-
Smith, L.J.1
Redfield, C.2
Smith, R.A.G.3
Dobson, C.M.4
Clore, G.M.5
Gronenborn, A.M.6
-
6
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
C. Chothia, and A.M. Lesk The relation between the divergence of sequence and structure in proteins EMBO J. 5 1986 823 826
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
7
-
-
0027485083
-
Comparison of conformational characteristics in structurally similar protein pairs
-
T.P. Flores, C.A. Orengo, D.S. Moss, and J.M. Thornton Comparison of conformational characteristics in structurally similar protein pairs Protein Sci. 2 1993 1811 1826
-
(1993)
Protein Sci.
, vol.2
, pp. 1811-1826
-
-
Flores, T.P.1
Orengo, C.A.2
Moss, D.S.3
Thornton, J.M.4
-
8
-
-
0032897494
-
An analysis of conformational changes on protein-protein association: Implications for predictive docking
-
M.J. Betts, and M.J.E. Sternberg An analysis of conformational changes on protein-protein association: implications for predictive docking Protein Eng. 12 1999 271 283
-
(1999)
Protein Eng.
, vol.12
, pp. 271-283
-
-
Betts, M.J.1
Sternberg, M.J.E.2
-
9
-
-
0026029144
-
Refined crystal structures of subtilisin novo in complex with wild-type and two mutant eglins
-
D.W. Heinz, J.P. Priestle, J. Rahuel, K.S. Wilson, and M.G. Grutter Refined crystal structures of subtilisin novo in complex with wild-type and two mutant eglins J. Mol. Biol. 217 1991 353 371
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 353-371
-
-
Heinz, D.W.1
Priestle, J.P.2
Rahuel, J.3
Wilson, K.S.4
Grutter, M.G.5
-
10
-
-
0026486538
-
Crystal packing in six crystal forms of Pancreatic Ribonuclease
-
M.P. Crosio, J. Janin, and M. Jullien Crystal packing in six crystal forms of Pancreatic Ribonuclease J. Mol. Biol. 228 1992 243 251
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 243-251
-
-
Crosio, M.P.1
Janin, J.2
Jullien, M.3
-
11
-
-
0026645602
-
Variability of conformations at crystal contacts in BPTI represent true low-energy structures: Correspondence among lattice packing and molecular dynamics structures
-
A.A. Kossiakoff, M. Randal, J. Guenot, and C. Eigenbrot Variability of conformations at crystal contacts in BPTI represent true low-energy structures: correspondence among lattice packing and molecular dynamics structures Proteins: Struct. Funct. Genet. 14 1992 65 74
-
(1992)
Proteins: Struct. Funct. Genet.
, vol.14
, pp. 65-74
-
-
Kossiakoff, A.A.1
Randal, M.2
Guenot, J.3
Eigenbrot, C.4
-
12
-
-
0028287213
-
Comparison of the structures and the crystal contacts of trypanosomal triosephosphate isomerase in four different crystal forms
-
K.V.R. Kishan, J.P. Zeelen, M.E.M. Noble, T.V. Borchert, and R.K. Wierenga Comparison of the structures and the crystal contacts of trypanosomal triosephosphate isomerase in four different crystal forms Protein Sci. 3 1994 779 787
-
(1994)
Protein Sci.
, vol.3
, pp. 779-787
-
-
Kishan, K.V.R.1
Zeelen, J.P.2
Noble, M.E.M.3
Borchert, T.V.4
Wierenga, R.K.5
-
13
-
-
0028244183
-
Crystal structure of human class mu glutathione transferase GSTM2-2. Effects of lattice packing on conformational heterogeneity
-
S. Raghunathan, R.J. Chandross, R.H. Kretsinger, T.J. Allison, C.J. Penington, and G.S. Rule Crystal structure of human class mu glutathione transferase GSTM2-2. Effects of lattice packing on conformational heterogeneity J. Mol. Biol. 238 1994 815 832
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 815-832
-
-
Raghunathan, S.1
Chandross, R.J.2
Kretsinger, R.H.3
Allison, T.J.4
Penington, C.J.5
Rule, G.S.6
-
14
-
-
0029150760
-
Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozymes
-
X.J. Zhang, J.A. Wozniak, and B.W. Matthews Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozymes J. Mol. Biol. 250 1995 527 552
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 527-552
-
-
Zhang, X.J.1
Wozniak, J.A.2
Matthews, B.W.3
-
15
-
-
0030656217
-
Comparison of two independent crystal structures of human dihydrofolate reductase ternary complexes reduced with nicotinamide adenine dinucleotide phosphate and the very tight-binding inhibitor PT523
-
V. Cody, N. Galitsky, J.R. Luft, W. Pangborn, A. Rosowsky, and R.L. Blakley Comparison of two independent crystal structures of human dihydrofolate reductase ternary complexes reduced with nicotinamide adenine dinucleotide phosphate and the very tight-binding inhibitor PT523 Biochemistry 36 1997 13897 13903
-
(1997)
Biochemistry
, vol.36
, pp. 13897-13903
-
-
Cody, V.1
Galitsky, N.2
Luft, J.R.3
Pangborn, W.4
Rosowsky, A.5
Blakley, R.L.6
-
16
-
-
0032925243
-
Refined structure of orthorhombic lysozyme crystallized at high temperature: Correlation between morphology intermolecular contacts
-
H. Oki, Y. Matsuura, H. Komatsu, and A.A. Chernov Refined structure of orthorhombic lysozyme crystallized at high temperature: correlation between morphology intermolecular contacts Acta Crystallog. sect. D 55 1999 114 121
-
(1999)
Acta Crystallog. Sect. D
, vol.55
, pp. 114-121
-
-
Oki, H.1
Matsuura, Y.2
Komatsu, H.3
Chernov, A.A.4
-
17
-
-
0034283162
-
Open structures of MurD: Domain movements and structural similarities with folylpolyglutamate synthetase
-
J.A. Bertrand, E. Fanchon, L. Martin, L. Chantalat, G. Auger, and D. Blanot Open structures of MurD: Domain movements and structural similarities with folylpolyglutamate synthetase J. Mol. Biol. 301 2000 1257 1266
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 1257-1266
-
-
Bertrand, J.A.1
Fanchon, E.2
Martin, L.3
Chantalat, L.4
Auger, G.5
Blanot, D.6
-
18
-
-
0034980394
-
Two structures of cyclophilin 40: Folding and fidelity in the TPR domains
-
P. Taylor, J. Dornan, A. Carrello, R.F. Minchin, T. Ratajczak, and M.D. Walkinshaw Two structures of cyclophilin 40: folding and fidelity in the TPR domains Structure 9 2001 431 438
-
(2001)
Structure
, vol.9
, pp. 431-438
-
-
Taylor, P.1
Dornan, J.2
Carrello, A.3
Minchin, R.F.4
Ratajczak, T.5
Walkinshaw, M.D.6
-
19
-
-
0038757683
-
Complex conformations and crystal contacts
-
J.L. Diener Complex conformations and crystal contacts Nature Struct. Biol. 10 2003 494 494
-
(2003)
Nature Struct. Biol.
, vol.10
, pp. 494-494
-
-
Diener, J.L.1
-
20
-
-
0031576989
-
Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: A new homology modeling tool
-
M.J. Bower, F.E. Cohen, and R.L. Dunbrack Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool J. Mol. Biol. 267 1997 1268 1282
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1268-1282
-
-
Bower, M.J.1
Cohen, F.E.2
Dunbrack, R.L.3
-
21
-
-
0036310711
-
On the role of the crystal environment in determining protein side-chain conformations
-
M.P. Jacobson, R.A. Friesner, Z.X. Xiang, and B. Honig On the role of the crystal environment in determining protein side-chain conformations J. Mol. Biol. 320 2002 597 608
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 597-608
-
-
Jacobson, M.P.1
Friesner, R.A.2
Xiang, Z.X.3
Honig, B.4
-
22
-
-
0027321067
-
Refinement of the structure of human basic fibroblast growth factor at 1.6 Å resolution and analysis of presumed heparin binding sites by selenate substitution
-
A.E. Eriksson, L.S. Cousens, and B.W. Matthews Refinement of the structure of human basic fibroblast growth factor at 1.6 Å resolution and analysis of presumed heparin binding sites by selenate substitution Protein Sci. 2 1993 1274 1284
-
(1993)
Protein Sci.
, vol.2
, pp. 1274-1284
-
-
Eriksson, A.E.1
Cousens, L.S.2
Matthews, B.W.3
-
23
-
-
0026323941
-
Three-dimensional structure of human basic fibroblast growth factor, a structural homolog of interleukin 1B
-
J.D. Zhang, L.S. Cousens, P.J. Barr, and S.R. Sprang Three-dimensional structure of human basic fibroblast growth factor, a structural homolog of interleukin 1B Proc. Natl Acad. Sci. USA 88 1991 3446 3450
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 3446-3450
-
-
Zhang, J.D.1
Cousens, L.S.2
Barr, P.J.3
Sprang, S.R.4
-
26
-
-
2342525085
-
Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography
-
M.A. DePristo, P.I.W. de Bakker, and T. Blundell Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography Structure 12 2004 831 838
-
(2004)
Structure
, vol.12
, pp. 831-838
-
-
Depristo, M.A.1
De Bakker, P.I.W.2
Blundell, T.3
-
27
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
V. Sobolev, A. Sorokine, J. Prilusky, E.E. Abola, and M. Edelman Automated analysis of interatomic contacts in proteins Bioinformatics 15 1999 327 332
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
28
-
-
0031718310
-
Homology modeling, model and software evaluation: Three related resources
-
R. Rodriguez, G. Chinea, N. Lopez, T. Pons, and G. Vriend Homology modeling, model and software evaluation: three related resources Bioinformatics 14 1998 523 528
-
(1998)
Bioinformatics
, vol.14
, pp. 523-528
-
-
Rodriguez, R.1
Chinea, G.2
Lopez, N.3
Pons, T.4
Vriend, G.5
-
29
-
-
0006575261
-
Visualization of macromolecular crystal packing using Virtual Reality Modelling Language (VRML)
-
T.Y. Fu, and Y.W. Chen Visualization of macromolecular crystal packing using Virtual Reality Modelling Language (VRML) J. Appl. Crystallog. 29 1996 594 597
-
(1996)
J. Appl. Crystallog.
, vol.29
, pp. 594-597
-
-
Fu, T.Y.1
Chen, Y.W.2
-
30
-
-
0030877077
-
Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers
-
S. Dasgupta, G.H. Iyer, S.H. Bryant, C.E. Lawrence, and J.A. Bell Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers Proteins: Struct. Funct. Genet. 28 1997 494 514
-
(1997)
Proteins: Struct. Funct. Genet.
, vol.28
, pp. 494-514
-
-
Dasgupta, S.1
Iyer, G.H.2
Bryant, S.H.3
Lawrence, C.E.4
Bell, J.A.5
-
31
-
-
0028156696
-
Accuracy of refined protein structures. II. Comparison of four independently refined models of human interleukin 1B
-
D.H. Ohlendorf Accuracy of refined protein structures. II. Comparison of four independently refined models of human interleukin 1B Acta Crystallog. sect. D 50 1994 808 812
-
(1994)
Acta Crystallog. Sect. D
, vol.50
, pp. 808-812
-
-
Ohlendorf, D.H.1
-
32
-
-
0030501419
-
Use of non-crystallographic symmetry in protein structure refinement
-
G.J. Kleywegt Use of non-crystallographic symmetry in protein structure refinement Acta Crystallog. sect. D 52 1996 842 857
-
(1996)
Acta Crystallog. Sect. D
, vol.52
, pp. 842-857
-
-
Kleywegt, G.J.1
-
33
-
-
12744263121
-
Simultaneous determination of protein structure and dynamics
-
K. Lindorff-Larsen, R.B. Best, M.A. DePristo, C.M. Dobson, and M. Vendruscolo Simultaneous determination of protein structure and dynamics Nature 433 2005 128 132
-
(2005)
Nature
, vol.433
, pp. 128-132
-
-
Lindorff-Larsen, K.1
Best, R.B.2
Depristo, M.A.3
Dobson, C.M.4
Vendruscolo, M.5
-
34
-
-
1842788912
-
Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins
-
E. Eyal, R. Najmanovich, B.J. McConkey, M. Edelman, and V. Sobolev Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins J. Comp. Chem. 25 2004 712 724
-
(2004)
J. Comp. Chem.
, vol.25
, pp. 712-724
-
-
Eyal, E.1
Najmanovich, R.2
McConkey, B.J.3
Edelman, M.4
Sobolev, V.5
-
36
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
F.K. Bernstein, and G. Williams The Protein Data Bank: a computer-based archival file for macromolecular structures J. Mol. Biol. 112 1977 535 542
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.K.1
Williams, G.2
-
37
-
-
0033954256
-
The Protein Data Bank
-
H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, and H. Weissig The Protein Data Bank Nucl. Acids Res. 28 2000 235 242
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
-
38
-
-
0043180474
-
PISCES: A protein sequence culling server
-
G.L. Wang, and R.L. Dunbrack PISCES: a protein sequence culling server Bioinformatics 19 2003 1589 1591
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.L.1
Dunbrack, R.L.2
-
39
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project Number 4
-
Collaborative Computational Project Number 4 The CCP4 suite: programs for protein crystallography Acta Crystallog. sect. D 50 1994 760 763
-
(1994)
Acta Crystallog. Sect. D
, vol.50
, pp. 760-763
-
-
-
40
-
-
0036773411
-
Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure
-
B.J. McConkey, V. Sobolev, and M. Edelman Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure Bioinformatics 18 2002 1365 1373
-
(2002)
Bioinformatics
, vol.18
, pp. 1365-1373
-
-
McConkey, B.J.1
Sobolev, V.2
Edelman, M.3
-
43
-
-
0028961335
-
SCOP: A structrural classification of proteins database for the investigation of sequences and structures
-
A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia SCOP: a structrural classification of proteins database for the investigation of sequences and structures J. Mol. Biol. 247 1995 536 540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
44
-
-
0035874146
-
Analysis of a data set of paired uncomplexed protein structures: New metrics for side-chain flexibility and model evaluation
-
S.R. Zhao, D.S. Goodsell, and A.J. Olson Analysis of a data set of paired uncomplexed protein structures: new metrics for side-chain flexibility and model evaluation Proteins: Struct. Funct. Genet. 43 2001 271 279
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.43
, pp. 271-279
-
-
Zhao, S.R.1
Goodsell, D.S.2
Olson, A.J.3
-
45
-
-
0031439702
-
Analysis of temperature factor distribution in high-resolution protein structures
-
S. Parthasarathy, and M.R.N. Murthy Analysis of temperature factor distribution in high-resolution protein structures Protein Sci. 6 1997 2561 2567
-
(1997)
Protein Sci.
, vol.6
, pp. 2561-2567
-
-
Parthasarathy, S.1
Murthy, M.R.N.2
|