-
1
-
-
17644389315
-
Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM
-
Altermann, E., W. M. Russell, M. A. Azcarate-Peril, R. Barrangou, B. L. Buck, O. McAuliffe, N. Souther, A. Dobson, T. Duong, M. Callanan, S. Lick, A. Hamrick, R. Cano, and T. R. Klaenhammer. 2005. Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc. Natl. Acad. Sci. USA 102:3906-3912.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 3906-3912
-
-
Altermann, E.1
Russell, W.M.2
Azcarate-Peril, M.A.3
Barrangou, R.4
Buck, B.L.5
McAuliffe, O.6
Souther, N.7
Dobson, A.8
Duong, T.9
Callanan, M.10
Lick, S.11
Hamrick, A.12
Cano, R.13
Klaenhammer, T.R.14
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
4444353678
-
Phylogenetic reconstruction and lateral gene transfer
-
Bapteste, E., Y. Boucher, J. Leigh, and W. F. Doolittle. 2004. Phylogenetic reconstruction and lateral gene transfer. Trends Microbiol. 12:406-411.
-
(2004)
Trends Microbiol
, vol.12
, pp. 406-411
-
-
Bapteste, E.1
Boucher, Y.2
Leigh, J.3
Doolittle, W.F.4
-
4
-
-
33744965455
-
Beneficial lactobacilli in food and feed: Long-term use, biodiversity and proposals for specific and realistic safety assessments
-
Bernardeau, M., M. Guguen, and J. P. Vernoux. 2006. Beneficial lactobacilli in food and feed: long-term use, biodiversity and proposals for specific and realistic safety assessments. FEMS Microbiol. Rev. 30:487-513.
-
(2006)
FEMS Microbiol. Rev
, vol.30
, pp. 487-513
-
-
Bernardeau, M.1
Guguen, M.2
Vernoux, J.P.3
-
5
-
-
9144222162
-
The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content
-
Boekhorst, J., R. J. Siezen, M. C. Zwahlen, D. Vilanova, R. D. Pridmore, A. Mercenier, M. Kleerebezem, W. M. de Vos, H. Brussow, and F. Desiere. 2004. The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. Microbiology 150:3601-3611.
-
(2004)
Microbiology
, vol.150
, pp. 3601-3611
-
-
Boekhorst, J.1
Siezen, R.J.2
Zwahlen, M.C.3
Vilanova, D.4
Pridmore, R.D.5
Mercenier, A.6
Kleerebezem, M.7
de Vos, W.M.8
Brussow, H.9
Desiere, F.10
-
6
-
-
0027516830
-
Significant recovery of nonsporulating anaerobic rods from clinical specimens
-
Brook, I., and E. H. Frazier. 1993. Significant recovery of nonsporulating anaerobic rods from clinical specimens. Clin. Infect. Dis. 16:476-480.
-
(1993)
Clin. Infect. Dis
, vol.16
, pp. 476-480
-
-
Brook, I.1
Frazier, E.H.2
-
7
-
-
0035153828
-
Comparative phage genomics and the evolution of Siphoviridae: Insights from dairy phages
-
Brüssow, H., and F. Desiere. 2001. Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages. Mol. Microbiol. 39:213-222.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 213-222
-
-
Brüssow, H.1
Desiere, F.2
-
9
-
-
33750950813
-
Diversity of the genus Lactobacillus revealed by comparative genomics of five species
-
Canchaya, C., M. J. Claesson, G. F. Fitzgerald, D. van Sinderen, and P. W. O'Toole. 2006. Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology 152:3185-3196.
-
(2006)
Microbiology
, vol.152
, pp. 3185-3196
-
-
Canchaya, C.1
Claesson, M.J.2
Fitzgerald, G.F.3
van Sinderen, D.4
O'Toole, P.W.5
-
10
-
-
0038724281
-
Prophage genomics
-
Canchaya, C., C. Proux, G. Fournous, A. Bruttin, and H. Brüssow. 2003. Prophage genomics. Microbiol. Mol. Biol. Rev. 67:238-276.
-
(2003)
Microbiol. Mol. Biol. Rev
, vol.67
, pp. 238-276
-
-
Canchaya, C.1
Proux, C.2
Fournous, G.3
Bruttin, A.4
Brüssow, H.5
-
11
-
-
28644443758
-
The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K
-
Chaillou, S., M. C. Champomier-Verges, M. Cornet, A. M. Crutz-Le Coq, A. M. Dudez, V. Martin, S. Beaufils, E. Darbon-Rongere, R. Bossy, V. Loux, and M. Zagorec. 2005. The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. Nat. Biotechnol. 23:1527-1533.
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 1527-1533
-
-
Chaillou, S.1
Champomier-Verges, M.C.2
Cornet, M.3
Crutz-Le Coq, A.M.4
Dudez, A.M.5
Martin, V.6
Beaufils, S.7
Darbon-Rongere, E.8
Bossy, R.9
Loux, V.10
Zagorec, M.11
-
12
-
-
0037126643
-
Comparison of partial tuf gene sequences for the identification of lactobacilli
-
Chavagnat, F., M. Haueter, J. Jimeno, and M. G. Casey. 2002. Comparison of partial tuf gene sequences for the identification of lactobacilli. FEMS Microbiol. Lett. 117:177-183.
-
(2002)
FEMS Microbiol. Lett
, vol.117
, pp. 177-183
-
-
Chavagnat, F.1
Haueter, M.2
Jimeno, J.3
Casey, M.G.4
-
13
-
-
33646232504
-
Multireplicon genome architecture of Lactobacillus salivarius
-
Claesson, M. J., Y. Li, S. Leahy, C. Canchaya, J. P. van Pijkeren, A. M. Cerdeno-Tarraga, J. Parkhill, S. Flynn, G. C. O'Sullivan, J. K. Collins, D. Higgins, F. Shanahan, G. F. Fitzgerald, D. van Sinderen, and P. W. O'Toole. 2006. Multireplicon genome architecture of Lactobacillus salivarius. Proc. Natl. Acad. Sci. USA 103:6718-6723.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 6718-6723
-
-
Claesson, M.J.1
Li, Y.2
Leahy, S.3
Canchaya, C.4
van Pijkeren, J.P.5
Cerdeno-Tarraga, A.M.6
Parkhill, J.7
Flynn, S.8
O'Sullivan, G.C.9
Collins, J.K.10
Higgins, D.11
Shanahan, F.12
Fitzgerald, G.F.13
van Sinderen, D.14
O'Toole, P.W.15
-
14
-
-
33750810896
-
The tree of one percent
-
Dagan, T., and W. Martin. 2006. The tree of one percent. Genome Biol. 7:118.
-
(2006)
Genome Biol
, vol.7
, pp. 118
-
-
Dagan, T.1
Martin, W.2
-
15
-
-
33750958590
-
Taxonomy of lactobacillus and bifidobacteria
-
G. W. Tannock ed, Caister Academic Press, Wymondham, Norfolk, United Kingdom
-
Dellaglio, F., and G. E. Felis. 2005. Taxonomy of lactobacillus and bifidobacteria, p. 25-49. In G. W. Tannock (ed.), Probiotics and prebiotics: scientific aspects. Caister Academic Press, Wymondham, Norfolk, United Kingdom.
-
(2005)
Probiotics and prebiotics: Scientific aspects
, pp. 25-49
-
-
Dellaglio, F.1
Felis, G.E.2
-
17
-
-
0037337509
-
Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays
-
Dobrindt, U., F. Agerer, K. Michaelis, A. Janka, C. Buchrieser, M. Samuelson, C. Svanborg, G. Gottschalk, H. Karch, and J. Hacker. 2003. Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays. J. Bacteriol. 185:1831-1840.
-
(2003)
J. Bacteriol
, vol.185
, pp. 1831-1840
-
-
Dobrindt, U.1
Agerer, F.2
Michaelis, K.3
Janka, A.4
Buchrieser, C.5
Samuelson, M.6
Svanborg, C.7
Gottschalk, G.8
Karch, H.9
Hacker, J.10
-
18
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle, W. F. 1999. Phylogenetic classification and the universal tree. Science 284:2124-2129.
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
19
-
-
33845890829
-
Genomics and the bacterial species problem
-
Doolittle, W. F., and R. T. Papke. 2006. Genomics and the bacterial species problem. Genome Biol. 7:116.
-
(2006)
Genome Biol
, vol.7
, pp. 116
-
-
Doolittle, W.F.1
Papke, R.T.2
-
20
-
-
0035902534
-
Evolutionary genomics of Staphylococcus aureus: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic
-
Fitzgerald, J. R., D. E. Sturdevant, S. M. Mackie, S. R. Gill, and J. M. Mussen. 2001. Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic. Proc. Natl. Acad. Sci. USA 98:8821-8826,
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8821-8826
-
-
Fitzgerald, J.R.1
Sturdevant, D.E.2
Mackie, S.M.3
Gill, S.R.4
Mussen, J.M.5
-
21
-
-
0026722016
-
-
Fujisawa, T., Y. Benno, T. Yaeshima, and T. Mitsuoka. 1992. Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). Int. J. Syst. Bacteriol. 42:487-491.
-
Fujisawa, T., Y. Benno, T. Yaeshima, and T. Mitsuoka. 1992. Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). Int. J. Syst. Bacteriol. 42:487-491.
-
-
-
-
22
-
-
16344379864
-
Primaclade - a flexible tool to find conserved PCR primers across multiple species
-
Gadberry, M. D., S. T. Malcomber, A. N. Doust, and E. A. Kellogg. 2005. Primaclade - a flexible tool to find conserved PCR primers across multiple species. Bioinformatics 21:1263-1264.
-
(2005)
Bioinformatics
, vol.21
, pp. 1263-1264
-
-
Gadberry, M.D.1
Malcomber, S.T.2
Doust, A.N.3
Kellogg, E.A.4
-
23
-
-
0018856587
-
Taxonomy of the Lactobacillus acidophilus group
-
Johnson, J. L., C. F. Phelps, C. S. Cummins, J. London, and F. Gasser. 1980. Taxonomy of the Lactobacillus acidophilus group. Int. J. Syst. Bacteriol. 30:53-68.
-
(1980)
Int. J. Syst. Bacteriol
, vol.30
, pp. 53-68
-
-
Johnson, J.L.1
Phelps, C.F.2
Cummins, C.S.3
London, J.4
Gasser, F.5
-
24
-
-
23944518601
-
Genomic features of lactic acid bacteria affecting bioprocessing and health
-
Klaenhammer, T. R., R. Barrangou, B. L. Buck, M. A. Azcarate-Peril, and E. Altermann. 2005. Genomic features of lactic acid bacteria affecting bioprocessing and health. FEMS Microbiol. Rev. 29:393-409.
-
(2005)
FEMS Microbiol. Rev
, vol.29
, pp. 393-409
-
-
Klaenhammer, T.R.1
Barrangou, R.2
Buck, B.L.3
Azcarate-Peril, M.A.4
Altermann, E.5
-
25
-
-
0037452621
-
Complete genome sequence of Lactobacillus plantarum WCFS1
-
Kleerebezem, M., J. Boekhorst, R. van Kranenburg, D. Molenaar, O. P. Kuipers, R. Leer, R. Tarchini, S. A. Peters, H. M. Sandbrink, M. W. Fiers, W. Stiekema, R. M. Lankhorst, P. A. Bron, S. M. Hoffer, M. N. Groot, R. Kerkhoven, M. de Vries, B. Ursing, W. M. de Vos, and R. J. Siezen. 2003. Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad. Sci. USA 100:1990-1995.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 1990-1995
-
-
Kleerebezem, M.1
Boekhorst, J.2
van Kranenburg, R.3
Molenaar, D.4
Kuipers, O.P.5
Leer, R.6
Tarchini, R.7
Peters, S.A.8
Sandbrink, H.M.9
Fiers, M.W.10
Stiekema, W.11
Lankhorst, R.M.12
Bron, P.A.13
Hoffer, S.M.14
Groot, M.N.15
Kerkhoven, R.16
de Vries, M.17
Ursing, B.18
de Vos, W.M.19
Siezen, R.J.20
more..
-
26
-
-
0033832668
-
Use of the DNA sequence of variable regions of the 16S rRNA gene for rapid and accurate identification of bacteria in the Lactobacillus acidophilus complex
-
Kullen, M. J., R. B. Sanozky-Dawes, D. C. Crowell, and T. R. Klaenhammer. 2000. Use of the DNA sequence of variable regions of the 16S rRNA gene for rapid and accurate identification of bacteria in the Lactobacillus acidophilus complex. J. Appl. Microbiol. 89:511-516.
-
(2000)
J. Appl. Microbiol
, vol.89
, pp. 511-516
-
-
Kullen, M.J.1
Sanozky-Dawes, R.B.2
Crowell, D.C.3
Klaenhammer, T.R.4
-
27
-
-
13844306368
-
Measuring genome conservation across taxa: Divided strains and united kingdoms
-
Kunin, V., D. Ahren, L. Goldovsky, P. Janssen, and C. A. Ouzounis. 2005. Measuring genome conservation across taxa: divided strains and united kingdoms. Nucleic Acids Res. 33:616-621.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 616-621
-
-
Kunin, V.1
Ahren, D.2
Goldovsky, L.3
Janssen, P.4
Ouzounis, C.A.5
-
28
-
-
22244450083
-
The net of life: Reconstructing the microbial phylogenetic network
-
Kunin, V., L. Goldovsky, N. Darzentas, and C. A. Ouzounis. 2005. The net of life: reconstructing the microbial phylogenetic network. Genome Res. 15:954-959.
-
(2005)
Genome Res
, vol.15
, pp. 954-959
-
-
Kunin, V.1
Goldovsky, L.2
Darzentas, N.3
Ouzounis, C.A.4
-
30
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S., A. Phillippy, A. L. Delcher, M. Smoot, M. Shumway, C. Antonescu, and S. L. Salzberg. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5:R12.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
31
-
-
0036373447
-
Genetic and biochemical characterization of exopolysaccharide biosynthesis by Lactobacillus delbrueckii subsp. bulgaricus
-
Lamothe, G. T., L. Jolly, B. Mollet, and F. Stingele. 2002. Genetic and biochemical characterization of exopolysaccharide biosynthesis by Lactobacillus delbrueckii subsp. bulgaricus. Arch. Microbiol. 178:218-228.
-
(2002)
Arch. Microbiol
, vol.178
, pp. 218-228
-
-
Lamothe, G.T.1
Jolly, L.2
Mollet, B.3
Stingele, F.4
-
32
-
-
14644420305
-
Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species
-
Le Gall, T., P. Darlu, P. Escobar-Paramo, B. Picard, and E. Denamur. 2005. Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species. Genome Res. 15:260-268.
-
(2005)
Genome Res
, vol.15
, pp. 260-268
-
-
Le Gall, T.1
Darlu, P.2
Escobar-Paramo, P.3
Picard, B.4
Denamur, E.5
-
33
-
-
0842326197
-
Comparison of Campylobacter jejuni isolates implicated in Guillain-Barre syndrome and strains that cause enteritis by a DNA microarray
-
Leonard, E. E., L. S. Tompkins, S. Falkow, and I. Nachamkin. 2004. Comparison of Campylobacter jejuni isolates implicated in Guillain-Barre syndrome and strains that cause enteritis by a DNA microarray. Infect. Immun. 72:1199-1203.
-
(2004)
Infect. Immun
, vol.72
, pp. 1199-1203
-
-
Leonard, E.E.1
Tompkins, L.S.2
Falkow, S.3
Nachamkin, I.4
-
34
-
-
33750341148
-
-
Makarova, K., A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakhova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D. M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J. H. Lee, I. Diaz-Muniz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Ganesan, Y. Xie, H. Rawsthorne, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D. O'sullivan, J. Steele, G. Unlu, M. Saier, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer, and D. Mills. 2006. Comparative genomics of the lactic acid bacteria. Proc. Natl. Acad. Sci. USA 103:15611-15616.
-
Makarova, K., A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakhova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D. M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J. H. Lee, I. Diaz-Muniz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Ganesan, Y. Xie, H. Rawsthorne, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D. O'sullivan, J. Steele, G. Unlu, M. Saier, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer, and D. Mills. 2006. Comparative genomics of the lactic acid bacteria. Proc. Natl. Acad. Sci. USA 103:15611-15616.
-
-
-
-
35
-
-
0033105036
-
An alternative inverse PCR (IPCR) method to amplify DNA sequences flanking Tn5 transposon insertions
-
Martin, V. J. J., and W. W. Mohn. 1999. An alternative inverse PCR (IPCR) method to amplify DNA sequences flanking Tn5 transposon insertions. J. Microbiol. Methods 35:163-166.
-
(1999)
J. Microbiol. Methods
, vol.35
, pp. 163-166
-
-
Martin, V.J.J.1
Mohn, W.W.2
-
36
-
-
24344475251
-
Exploring Lactobacillus plantarum genome diversity by using microarrays
-
Molenaar, D., F. Bringel, F. H. Schuren, W. M. de Vos, R. J. Siezen, and M. Kleerebezem. 2005. Exploring Lactobacillus plantarum genome diversity by using microarrays. J. Bacteriol. 187:6119-6127.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6119-6127
-
-
Molenaar, D.1
Bringel, F.2
Schuren, F.H.3
de Vos, W.M.4
Siezen, R.J.5
Kleerebezem, M.6
-
37
-
-
33244496692
-
-
Naser, S. M., K. E. Hagen, M. Vancanneyt, I. Cleenwerck, J. Swings, and T. A. Tompkins. 2006. Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980). Int. J. Syst. Evol. Microbiol. 56:355-360.
-
Naser, S. M., K. E. Hagen, M. Vancanneyt, I. Cleenwerck, J. Swings, and T. A. Tompkins. 2006. Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980). Int. J. Syst. Evol. Microbiol. 56:355-360.
-
-
-
-
38
-
-
22144436248
-
Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes
-
Naser, S. M., F. L. Thompson, B. Hoste, D. Gevers, P. Dawyndt, M. Vancanneyt, and J. Swings. 2005. Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151:2141-2150.
-
(2005)
Microbiology
, vol.151
, pp. 2141-2150
-
-
Naser, S.M.1
Thompson, F.L.2
Hoste, B.3
Gevers, D.4
Dawyndt, P.5
Vancanneyt, M.6
Swings, J.7
-
39
-
-
2642532185
-
Polymorphism of eps loci in Streptococcus thermophilus: Sequence replacement by putative horizontal transfer in S-thermophilus IP6757
-
Pluvinet, A., F. Charron-Bourgoin, C. Morel, and B. Decaris. 2004. Polymorphism of eps loci in Streptococcus thermophilus: sequence replacement by putative horizontal transfer in S-thermophilus IP6757. Int. Dairy J. 14:627-634.
-
(2004)
Int. Dairy J
, vol.14
, pp. 627-634
-
-
Pluvinet, A.1
Charron-Bourgoin, F.2
Morel, C.3
Decaris, B.4
-
40
-
-
0037173117
-
Evolutionary genomics of Salmonella: Gene acquisitions revealed by microarray analysis
-
Porwollik, S., R. M. Y. Wong, and M. McClelland. 2002. Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc. Natl. Acad. Sci. USA 99:8956-8961.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8956-8961
-
-
Porwollik, S.1
Wong, R.M.Y.2
McClelland, M.3
-
41
-
-
10744220291
-
The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533
-
Pridmore, R. D., B. Berger, F. Desiere, D. Vilanova, C. Barretto, A. C. Pittet, M. C. Zwahlen, M. Rouvet, E. Altermann, R. Barrangou, B. Mollet, A. Mercenier, T. Klaenhammer, F. Arigoni, and M. A. Schell. 2004. The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. Proc. Natl. Acad. Sci. USA 101:2512-2517.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 2512-2517
-
-
Pridmore, R.D.1
Berger, B.2
Desiere, F.3
Vilanova, D.4
Barretto, C.5
Pittet, A.C.6
Zwahlen, M.C.7
Rouvet, M.8
Altermann, E.9
Barrangou, R.10
Mollet, B.11
Mercenier, A.12
Klaenhammer, T.13
Arigoni, F.14
Schell, M.A.15
-
42
-
-
0142095003
-
Potential uses of probiotics in clinical practice
-
Reid, G., J. Jass, M. T. Sebulsky, and J. K. McCormick. 2003. Potential uses of probiotics in clinical practice. Clin. Microbiol. Rev. 16:658-672.
-
(2003)
Clin. Microbiol. Rev
, vol.16
, pp. 658-672
-
-
Reid, G.1
Jass, J.2
Sebulsky, M.T.3
McCormick, J.K.4
-
43
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
44
-
-
0034687702
-
A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
-
Salama, N., K. Guillemin, T. K. McDaniel, G. Sherlock, L. Tompkins, and S. Falkow. 2000. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc. Natl. Acad. Sci. USA 97:14668-14673.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 14668-14673
-
-
Salama, N.1
Guillemin, K.2
McDaniel, T.K.3
Sherlock, G.4
Tompkins, L.5
Falkow, S.6
-
45
-
-
33745494101
-
Lactobacillus endocarditis: Case report and review of cases reported since 1992
-
Salvana, E. M., and M. Frank. 2006. Lactobacillus endocarditis: case report and review of cases reported since 1992. J. Infect. 53:e5-e10.
-
(2006)
J. Infect
, vol.53
-
-
Salvana, E.M.1
Frank, M.2
-
46
-
-
24344477663
-
Lactobacillus paracasei strain ST11 has no effect on rotavirus but ameliorates the outcome of nonrotavirus diarrhea in children from Bangladesh
-
Sarker, S. A., S. Sultana, G. J. Fuchs, N. H. Alam, T. Azim, H. Brüssow, and L. Hammarstrom. 2005. Lactobacillus paracasei strain ST11 has no effect on rotavirus but ameliorates the outcome of nonrotavirus diarrhea in children from Bangladesh. Pediatrics 116:e221-e228.
-
(2005)
Pediatrics
, vol.116
-
-
Sarker, S.A.1
Sultana, S.2
Fuchs, G.J.3
Alam, N.H.4
Azim, T.5
Brüssow, H.6
Hammarstrom, L.7
-
47
-
-
0030067516
-
Phylogeny of the genus Lactobacillus and related genera
-
Schleifer, K. H., and W. Ludwig. 1995. Phylogeny of the genus Lactobacillus and related genera. Syst. Appl. Microbiol. 18:461-467.
-
(1995)
Syst. Appl. Microbiol
, vol.18
, pp. 461-467
-
-
Schleifer, K.H.1
Ludwig, W.2
-
48
-
-
4444242774
-
Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens
-
Servin, A. L. 2004. Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens. FEMS Microbiol. Rev. 28:405-440.
-
(2004)
FEMS Microbiol. Rev
, vol.28
, pp. 405-440
-
-
Servin, A.L.1
-
49
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt, E., W. Frederiksen, G. M. Garrity, P. A. Grimont, P. Kampfer, M. C. Maiden, X. Nesme, R. Rossello-Mora, J. Swings, H. G. Truper, L. Vauterin, A. C. Ward, and W. B. Whitman. 2002. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52:1043-1047.
-
(2002)
Int. J. Syst. Evol. Microbiol
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
Grimont, P.A.4
Kampfer, P.5
Maiden, M.C.6
Nesme, X.7
Rossello-Mora, R.8
Swings, J.9
Truper, H.G.10
Vauterin, L.11
Ward, A.C.12
Whitman, W.B.13
-
50
-
-
2942556635
-
A special fondness for lactobacilli
-
Tannock, G. W. 2004. A special fondness for lactobacilli. Appl. Environ. Microbiol. 70:3189-3194.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 3189-3194
-
-
Tannock, G.W.1
-
51
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov, R. L., D. A. Natale, I. V. Garkavtsev, T. A. Tatusova, U. T. Shankavaram, B. S. Rao, B. Kiryutin, M. Y. Galperin, N. D. Fedorova, and E. V. Koonin. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:22-28.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
52
-
-
0034837658
-
Determination of Enterococcus faecalis groESL full-length sequence and application for species identification
-
Teng, L. J., P. R. Hsueh, Y. H. Wang, H. M. Lin, K. T. Luh, and S. W. Ho. 2001. Determination of Enterococcus faecalis groESL full-length sequence and application for species identification. J. Clin. Microbiol. 39:3326-3331.
-
(2001)
J. Clin. Microbiol
, vol.39
, pp. 3326-3331
-
-
Teng, L.J.1
Hsueh, P.R.2
Wang, Y.H.3
Lin, H.M.4
Luh, K.T.5
Ho, S.W.6
-
53
-
-
25444524604
-
-
Tettelin, H, V. Masignani, M. J. Cieslewicz, C. Donati, D. Medini, N. L. Ward, S. V. Angiuoli, J. Crabtree, A. L. Jones, A. S. Durkin, R. T. Deboy, T. M. Davidsen, M. Mora, M. Scarselli, I. Ros, J. D. Peterson, C. R. Hauser, J. P. Sundaram, W. C. Nelson, R. Madupu, L. M. Brinkac, R. J. Dodson, M. J. Rosovitz, S. A. Sullivan, S. C. Daugherty, D. H. Haft, J. Selengut, M. L. Gwinn, L. Zhou, N. Zafar, H. Khouri, D. Radune, G. Dimitrov, K. Watkins, K. J. O'Connor, S. Smith, T. R. Utterback, O. White, C. E. Rubens, G. Grandi, L. C. Madoff, D. L. Kasper, J. L. Telford, M. R. Wessels, R. Rappuoli, and C. M. Fraser. 2005. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial pan-genome. Proc. Natl. Acad. Sci. USA 102:13950-13955
-
Tettelin, H., V. Masignani, M. J. Cieslewicz, C. Donati, D. Medini, N. L. Ward, S. V. Angiuoli, J. Crabtree, A. L. Jones, A. S. Durkin, R. T. Deboy, T. M. Davidsen, M. Mora, M. Scarselli, I. Ros, J. D. Peterson, C. R. Hauser, J. P. Sundaram, W. C. Nelson, R. Madupu, L. M. Brinkac, R. J. Dodson, M. J. Rosovitz, S. A. Sullivan, S. C. Daugherty, D. H. Haft, J. Selengut, M. L. Gwinn, L. Zhou, N. Zafar, H. Khouri, D. Radune, G. Dimitrov, K. Watkins, K. J. O'Connor, S. Smith, T. R. Utterback, O. White, C. E. Rubens, G. Grandi, L. C. Madoff, D. L. Kasper, J. L. Telford, M. R. Wessels, R. Rappuoli, and C. M. Fraser. 2005. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome." Proc. Natl. Acad. Sci. USA 102:13950-13955.
-
-
-
-
54
-
-
0029942146
-
Polyphasic taxonomy, a consensus approach to bacterial systematics
-
Vandamme, P., B. Pot, M. Gillis, P. de Vos, K. Kersters, and J. Swings. 1996. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev. 60:407-438.
-
(1996)
Microbiol. Rev
, vol.60
, pp. 407-438
-
-
Vandamme, P.1
Pot, B.2
Gillis, M.3
de Vos, P.4
Kersters, K.5
Swings, J.6
-
55
-
-
33745128028
-
The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution
-
van de Guchte, M., S. Penaud, C. Grimaldi, V. Barbe, K. Bryson, P. Nicolas, C. Robert, S. Oztas, S. Mangenot, A. Couloux, V. Loux, R. Dervyn, R. Bossy, A. Bolotin, J. M. Batto, T. Walunas, J. F. Gibrat, P. Bessieres, J. Weissenbach, S. D. Ehrlich, and E. Maguin. 2006. The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc. Natl. Acad. Sci. USA 103:9274-9279.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9274-9279
-
-
van de Guchte, M.1
Penaud, S.2
Grimaldi, C.3
Barbe, V.4
Bryson, K.5
Nicolas, P.6
Robert, C.7
Oztas, S.8
Mangenot, S.9
Couloux, A.10
Loux, V.11
Dervyn, R.12
Bossy, R.13
Bolotin, A.14
Batto, J.M.15
Walunas, T.16
Gibrat, J.F.17
Bessieres, P.18
Weissenbach, J.19
Ehrlich, S.D.20
Maguin, E.21
more..
-
56
-
-
0032836615
-
Genetics and engineering of microbial exopolysaccharides for food: Approaches for the production of existing and novel polysaccharides
-
van Kranenburg, R., I. C. Boels, M. Kleerebezem, and W. M. de Vos. 1999. Genetics and engineering of microbial exopolysaccharides for food: approaches for the production of existing and novel polysaccharides. Curr. Opin. Biotechnol. 10:498-504.
-
(1999)
Curr. Opin. Biotechnol
, vol.10
, pp. 498-504
-
-
van Kranenburg, R.1
Boels, I.C.2
Kleerebezem, M.3
de Vos, W.M.4
-
57
-
-
0032693608
-
Functional analysis of glycosyltransferase genes from Lactococcus lactis and other gram-positive cocci: Complementation, expression, and diversity
-
van Kranenburg, R., H. R. Vos, I. I. van Swam, M. Kleerebezem, and W. M. de Vos. 1999. Functional analysis of glycosyltransferase genes from Lactococcus lactis and other gram-positive cocci: complementation, expression, and diversity. J. Bacteriol. 181:6347-6353.
-
(1999)
J. Bacteriol
, vol.181
, pp. 6347-6353
-
-
van Kranenburg, R.1
Vos, H.R.2
van Swam, I.I.3
Kleerebezem, M.4
de Vos, W.M.5
-
58
-
-
1542375392
-
The prophages of Lactobacillus johnsonii NCC 533: Comparative genomics and transcription analysis
-
Ventura, M., C. Canchaya, R. D. Pridmore, and H. Brussow. 2004. The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis. Virology 320:229-242.
-
(2004)
Virology
, vol.320
, pp. 229-242
-
-
Ventura, M.1
Canchaya, C.2
Pridmore, R.D.3
Brussow, H.4
-
59
-
-
0038782101
-
Integration and distribution of Lactobacillus johnsonii prophases
-
Ventura, M., C. Canchaya, R. D. Pridmore, B. Berger, and H. Brüssow. 2003. Integration and distribution of Lactobacillus johnsonii prophases. J. Bacteriol. 185:4603-4608.
-
(2003)
J. Bacteriol
, vol.185
, pp. 4603-4608
-
-
Ventura, M.1
Canchaya, C.2
Pridmore, R.D.3
Berger, B.4
Brüssow, H.5
-
60
-
-
0037126645
-
Specific identification and molecular typing analysis of Lactobacillus johnsonii by using PCR-based methods and pulsed-field gel electrophoresis
-
Ventura, M., and R. Zink. 2002. Specific identification and molecular typing analysis of Lactobacillus johnsonii by using PCR-based methods and pulsed-field gel electrophoresis. FEMS Microbiol. Lett. 217:141-154.
-
(2002)
FEMS Microbiol. Lett
, vol.217
, pp. 141-154
-
-
Ventura, M.1
Zink, R.2
-
61
-
-
2142745366
-
Comparative sequence analysis of the tuf and recA genes and restriction fragment length polymorphism of the internal transcribed spacer region sequences supply additional tools for discriminating Bifidobacterium lactis from Bifidobacterium animalis
-
Ventura, M., and R. Zink. 2003. Comparative sequence analysis of the tuf and recA genes and restriction fragment length polymorphism of the internal transcribed spacer region sequences supply additional tools for discriminating Bifidobacterium lactis from Bifidobacterium animalis. Appl. Environ. Microbiol. 69:7517-7522.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 7517-7522
-
-
Ventura, M.1
Zink, R.2
|