Use of the DNA sequence of variable regions of the 16S rRNA gene for rapid and accurate identification of bacteria in the Lactobacillus acidophilus complex

Journal of Applied Microbiology

Volumn 89, Issue 3, 2000, Pages 511-516

  Kullen, M J ^a   Sanozky Dawes, R B ^a   Crowell, D C ^a   Klaenhammer, T R ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLI; GENES; POLYMERASE CHAIN REACTION; RNA;

16S RRNA GENE; LACTOBACILLUS ACIDOPHILUS; LACTOBACILLUS GASSERI; PROBIOTIC STRAIN; VARIABLE REGIONS;

DNA SEQUENCES;

DNA; RNA 16S;

ARTICLE; BACTERIUM IDENTIFICATION; DNA DETERMINATION; DNA SEQUENCE; GENE AMPLIFICATION; LACTOBACILLUS; LACTOBACILLUS ACIDOPHILUS; LACTOBACILLUS AMYLOVORUS; NONHUMAN; POLYMERASE CHAIN REACTION;

BACTERIA (MICROORGANISMS); LACTOBACILLUS; LACTOBACILLUS ACIDOPHILUS; LACTOBACILLUS AMYLOVORUS; LACTOBACILLUS CRISPATUS; LACTOBACILLUS GALLINARUM; LACTOBACILLUS GASSERI; LACTOBACILLUS JOHNSONII; POSIBACTERIA;

EID: 0033832668     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2672.2000.01146.x     Document Type: Article

References (20)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Identification and phylogenetic analysis of Lactobacillus using multiplex RAPD-PCR
3. A medium for the cultivation of lactobacilli
4. Evaluation of random amplified polymorphic DNA (RAPD)-PCR as a method to differentiate Lactobacillus acidophilus, Lactobacillus crispatus, Lactobacillus amylovorus, Lactobacillus gallinarum, Lactobacillus gasseri and Lactobacillus johnsonii
5. Biotherapeutic agents. A neglected modality for the treatment and prevention of selected intestinal and vaginal infections
6. Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al., 1980) with the type strain of Lactobacillus amylovorus (Nakamura, 1981)
7. The genus Lactobacillus
8. Taxonomy of the Lactobacillus acidophilus group
9. Genus Lactobacillus Beijerinck 1901, 212(AL)
10. Heterogeneity of the species Lactobacillus acidophilus (Moro) Hansen and Moquot as revealed by biochemical characteristics and DNA-DNA hybridization
11. A differential medium for the enumeration of homofermentative and heterofermentative lactic acid bacteria
12. Compilation of small ribosomal subunit RNA structures
13. Identification and classification of Lactobacillus acidophilus, L. gasseri and L. johnsonii strains by SDS-PAGE and rRNA-targeted oligonucleotide probe hybridization
14. A selective medium for the isolation and enumeration of oral and fecal lactobacilli
15. Isolation of Lactobacillus acidophilus from faecal material
16. Identification of lactobacilli and bifidobacteria
17. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
18. Development of oligonucleotide primers from the 16S-23S rRNA intergenic sequences for identifying different dairy and probiotic lactic acid bacteria by PCR