Unravelling Nature's networks

Biochemical Society Transactions

Volumn 31, Issue 6, 2003, Pages 1457-1461

  Monk, N A M ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

Genomics; Mathematical modelling; Microarray; Modularity; Networks; Proteomics

Indexed keywords

CELL PROTEIN;

CELL INTERACTION; CONFERENCE PAPER; GENE; HUMAN; MATHEMATICAL MODEL; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; SIGNAL TRANSDUCTION;

EID: 0346158346     PISSN: 03005127     EISSN: None     Source Type: Journal    
DOI: 10.1042/bst0311457     Document Type: Conference Paper

References (70)

1. Dower, S.K. and Qwarnstrom, E.E. (2003) Biochem. Soc. Trans, 31, 1462-1471
2. Kamath, R.S., Fraser, A.G., Dong, Y., Poulin, G., Durbin, R., Gotta, M., Kanapink, A., Le Bot, N., Moreno, S., Sohrmann, M. et al. (2003) Nature (London) 421, 231-237
3. Baldi, P. and Hatfield, G.W. (2002) DNA Microarrays and Gene Expression, Cambridge University Press, Cambridge
4. Panda, S., Sato, T., Hampton, G.M. and Hogenesch, J.B. (2003) Trends Cell Biol. 13, 151-156
5. Uetz, P., Giot, L., Cagney, G., Mansfield, T.A., Judson, R.S., Knight, J.R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P. et al. (2000) Nature (London) 403, 623-627
6. Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M. and Sakaki, Y. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 4569-4574
7. Ho, Y., Gruhler, A., Heilbut, A., Bader, G.D., Moore, L., Adams, S.L., Millar, A., Taylor, P., Bennett, K., Boutilier, K. et al. (2002) Nature (London) 415, 180-183
8. Gavin, A.C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J.M., Michon, A.M., Cruciat, C.M. et al. (2002) Nature (London) 415, 141-147
9. Zhu, H., Bilgin, M., Bangham, R., Hall, D., Casamayor, A., Bertone, P., Lan, N., Jansen, R., Bidlinmaier, S., Houfek, T. et al. (2001) Science 293, 2101-2105
10. von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S.G., Fields, S. and Bork, P. (2002) Nature (London) 417, 399-403
11. Mills, J.C., Roth, K.A., Cagan, R.L. and Gordon, J.I. (2001) Nat. Cell Biol. 3, E175-E178
12. Spellman, P.T., Sherlock, G., Zhang, M.Q., Iyer, V.R., Anders, K., Eisen, M.B., Brown, P.O., Botstein, D. and Futcher, B. (1998) Mol. Biol. Cell 9, 3273-3297
13. Cho, R.J., Campbell, M.J., Winzeler, E.A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T.G., Gabrielian, A.E., Landsman, D., Lockhart, D.J. and Davis, R.W. (1998) Mol. Cell 2, 65-73
14. Kemmeren, P., van Berkum, N.L., Vilo, J., Bijma, T., Donders, R., Brazma, A. and Holstege, F.C.P. (2002). Mol. Cell 9, 1133-1143
15. Kemmeren, P. and Holstege, F.C.P. (2003) Biochem. Soc. Trans. 31, 1484-1487
16. Walhout, A.J.M., Reboul, J., Shtanko, O., Bertin, N., Vaglio, P., Ge, H., Lee, H., Doucette-Stamm, L., Gunsaius, K.C., Schetter, A.J. et al. (2002) Curr. Biol. 12, 1952-1958
17. D'haeseleer, P., Liang, S., and Somogyi, R. (2000) Bioinformatics 16, 707-726
18. Soinov, L.A., Krestyaninova, M.A. and Brazma, A. (2002) Genome Biol. 4, R6.1-R6.10
19. Soinov, L.A. (2003) Biochem. Soc. Trans. 31, 1497-1502
20. Husmeier, D. (2003) Biochem. Soc. Trans. 31, 1516-1518
21. Lee, T.I, Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I. et al. (2002) Science 298, 799-804
22. Newman, M.E.J. (2003) SIAM Rev. 45, 167-256
23. Erdös, P. and Rényi, A. (1960) Publ. Math. Inst. Hung. Acad. Sci. 5, 17-61
24. Jeong, H., Tombor, B., Albert, R., Oltvai, Z. N. and Barabási, A.-L (2000) Nature (London) 407, 651-654
25. Jeong, H., Mason, S., Barabási, A.-L. and Oltvai, Z. N. (2001) Nature (London) 411, 41-42
26. Wagner, A. (2001) Mol. Biol. Evol. 18, 1283-1292
27. Pastor-Satorras, R., Smith, E. and Sole, R.V. (2003) J. Theor. Biol. 222, 199-210
28. Thomas, A., Cannings, R., Monk, N.A.M. and Cannings, C. (2003) Biochem. Soc. Trans. 31, 1491-1496
29. Luscombe, N., Qian, J., Zhang, Z., Johnson, T. and Gerstein, M. (2002) Genome Biol. 3, 0040.1-0040.7.
30. Watts, D.J. and Strogatz, S.H. (1998) Nature (London) 393, 440-442
31. Fell, D.A. and Wagner, A. (2000) Nat. Biotech. 18, 1121-1122
32. Barabási, A.L. and Albert, R. (1999) Science 286, 509-512
33. Needham, J. (1933) Biol. Rev. 8, 180-223
34. Hartwell, L.H., Hopfield, J.J., Leibler, S. and Murray, A.W. (1999). Nature (London) 402, C47-C52
35. Snel, B., Bork, P. and Huynen, M.A. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 5890-5895
36. Ihmels, J., Friedlander, G., Bergmann, S., Sarig, O., Ziv, Y. and Barkai, N. (2002) Nat. Genet, 31, 370-377
37. Segal, E., Shapira, M., Regev, A., Pe'er, D., Botstein, D., Koller, D. and Friedman, N. (2003) Nat. Genet. 34, 166-176
38. Rives, A.W. and Galitski, T. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 1128-1133
39. Maslov, S. and Sneppen, K. (2002) Science 296, 910-913
40. Ravasz, E., Somera, A.L., Mongru, D.A., Oltvai, Z.N. and Barabási, A. L. (2002) Science 297, 1551-1555
41. Shen-Or, S.S., Milo, R., Mangan, S. and Alon, U. (2002) Nat. Genet. 31, 64-68
42. Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D. and Alon, U. (2002) Science 298, 824-827
43. Conant, G.C. and Wagner, A. (2003) Nat. Genet. 34, 264-266
44. Csete, M.E. and Doyle, J.C. (2002) Science 295, 1664-1669
45. Hansen, T.F. (2003) BioSystems 69, 83-94
46. Stark, J., Brewer, D., Barenco, M., Tomescu, D., Callard, R. and Hubank, M. (2003) Biochem. Soc. Trans. 31, 1519-1525
47. Weng, G., Bhalla, U.S. and Iyengar, R. (1999) Science 284, 92-96
48. Bower, J.M. and Bolouri, H. (2001) Computational Modelling of Genetic and Biochemical Networks, MIT Press, Cambridge, MA
49. Elowitz, M.B., Levine, A.J., Siggia, E.D. and Swain, P.S. (2002) Science 297, 1183-1186
50. Blake, W.J., Kaern, M., Cantor, C.R. and Collins, J.J. (2003) Nature (London) 422, 633-637
51. Hasty, J., McMillen, D., Isaacs, F. and Collins, J.J. (2001) Nat. Rev. Genet. 2, 268-279
52. Tyson, J.J., Chen, K.C. and Novák, B. (2003) Curr. Opin. Cell Biol. 15, 221-231
53. Novák, B. and Tyson, J.J. (2003) Biochem. Soc. Trans. 31, 1526-1530
54. Cho, K.-H. and Wolkenhauer, O. (2003) Biochem. Soc. Trans. 31, 1503-1509
55. von Dassow, G., Meir, E., Munro, E.M. and Odell, G.M. (2000) Nature (London) 406, 188-192
56. Ronen, M., Rosenberg, R., Shraiman, B.I. and Alon, U. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 10555-10560
57. Gardner, T.S., di Bernardo, D., Lorenz, D. and Collins, J.J. (2003) Science 301, 102-105
58. Tegnér, J., Yeung, M.K.S., Hasty, J. and Collins, J.J. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 5944-5949
59. Elowitz, M.B. and Leibler, S. (2000) Nature (London) 403, 335-338
60. Gardner, T.S., Cantor, C.R. and Collins, J.J. (2000) Nature (London) 403, 339-342
61. Becskei, A. and Serrano, L. (2000) Nature (London) 405, 590-593
62. Guet, C.C., Elowitz, M.B., Hsing, W. and Leibler, S. (2002) Science 296, 1466-1470
63. Atkinson, M.R., Savageau, M.A., Myers, J.T. and Ninfa, A.J. (2003) Cell 113, 597-607
64. Hasty, J., McMillen, D. and Collins, J.J. (2002) Nature (London) 420, 224-230
65. Monk, N.A.M. (2003) Curr. Biol. 13, 1409-1413
66. Lewis, J. (2003) Curr. Biol. 13, 1398-1408
67. Kriebel, P.W., Barr, V.A. and Parent, C.A. (2003) Cell 112, 549-560
68. Miyawaki, A. (2003) Dev. Cell 4, 295-305.
69. Meyer, T. and Teruel, M.N. (2003) Trends Cell Biol. 13, 101-106
70. Remy, I. and Michnick, S.W. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 7678-7683