Transcarboxylase mRNA: A marker which evidences P. freudenreichii survival and metabolic activity during its transit in the human gut

International Journal of Food Microbiology

Volumn 113, Issue 3, 2007, Pages 303-314

  Hervé, Christophe ^a   Fondrevez, Marc ^a   Chéron, Angélique ^c   Barloy Hubler, Frédérique ^c   Jan, Gwénaël ^b  

^a UMR1253   (France)

^b AGROCAMPUS OUEST   (France)

^c CNRS   (France)

Author keywords

Fermented milk; Human stools; Probiotic; Propionibacterium freudenreichii; Real time RT PCR; Transcarboxylase

Indexed keywords

CARBOXYLTRANSFERASE; MESSENGER RNA; MOLECULAR MARKER; PROBIOTIC AGENT; PROPIONIC ACID;

ARTICLE; BACTERIAL METABOLISM; BACTERIAL SURVIVAL; BACTERIAL VIABILITY; BACTERIUM DETECTION; CELL MIGRATION; COLONY FORMING UNIT; CONTROLLED STUDY; DAIRY PRODUCT; ENZYME ANALYSIS; ENZYME REGULATION; ENZYME SUBUNIT; FECES ANALYSIS; FECES MICROFLORA; FEMALE; FERMENTATION; GASTROINTESTINAL TRANSIT; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; HUMAN; HUMAN EXPERIMENT; INTESTINE INFECTION; MALE; NONHUMAN; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; OPERON; PROPIONIBACTERIUM FREUDENREICHII; PROTEIN EXPRESSION; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION;

BASE SEQUENCE; BIOLOGICAL MARKERS; CARBOXYL AND CARBAMOYL TRANSFERASES; COLONY COUNT, MICROBIAL; DAIRY PRODUCTS; DIGESTIVE SYSTEM; FECES; FERMENTATION; FOOD MICROBIOLOGY; GASTROINTESTINAL TRANSIT; HUMANS; MOLECULAR SEQUENCE DATA; PROBIOTICS; PROPIONIBACTERIUM; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER;

BACTERIA (MICROORGANISMS); PROPIONIBACTERIUM FREUDENREICHII;

EID: 33846522362     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2006.08.013     Document Type: Article

References (69)

1. Alvarez S., Medici M., Vintini E., Oliver G., de Ruiz Holgado A.P., and Perdigon G. Effect of the oral administration of Propionibacterium acidi-propionici on IgA levels and on the prevention of enteric infection in mice. Microbiol. Aliment. Nutr. 14 (1996) 237-243
2. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., and Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56 (1990) 1919-1925
3. Babuchowski A., Laniewska-Moroz L., and Warminska-Radyko I. Propionibacteria in fermented vegetables. Lait 79 (1999) 113-124
4. Barloy-Hubler F., Cheron A., Hellegouarch A., and Galibert F. Smc01944, a secreted peroxidase induced by oxidative stresses in Sinorhizobium meliloti 1021. Microbiology 150 (2004) 657-664
5. Bougle D., Roland N., Lebeurrier F., and Arhan P. Effect of propionibacteria supplementation on fecal bifidobacteria and segmental colonic transit time in healthy human subjects. Scand. J. Gastroenterol. 34 (1999) 144-148
6. Bron P.A., Grangette C., Mercenier A., de Vos W.M., and Kleerebezem M. Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J. Bacteriol. 186 (2004) 5721-5729
7. Chen S., Yee A., Griffiths M., Larkin C., Yamashiro C.T., Behari R., Paszko-Kolva C., Rahn K., and De Grandis S.A. The evaluation of a fluorogenic polymerase chain reaction assay for the detection of Salmonella species in food commodities. Int. J. Food Microbiol. 35 (1997) 239-250
8. Corthier G., Delorme C., Ehrlich S.D., and Renault P. Use of luciferase genes as biosensors to study bacterial physiology in the digestive tract. Appl. Environ. Microbiol. 64 (1998) 2721-2722
9. de Ambrosini M.V., Gonzalez S., Perdigon G., de Ruiz Holgado A.P., and Oliver G. Immunostimulating activity of cell walls from lactic acid bacteria and related species. Food Agric. Immunol. 10 (1998) 183-191
10. Deborde, C., 2002. Propionibacterium spp. In: Roginski, H., Fuquay, J.W., Fox, P.F. (Eds.), Encyclopedia of Dairy Sciences.3, Academic Press, Elsevier Science, Kent, UK, pp. 2330-2339.
11. Drouault S., Corthier G., Ehrlich S.D., and Renault P. Survival, physiology, and lysis of Lactococcus lactis in the digestive tract. Appl. Environ. Microbiol. 65 (1999) 4881-4886
12. Drouault S., Anba J., and Corthier G. Streptococcus thermophilus is able to produce a beta-galactosidase active during its transit in the digestive tract of germ-free mice. Appl. Environ. Microbiol. 68 (2002) 938-941
13. FAO/WHO. Guidelines for the evaluation of probiotics in food. Geneva, Switz: Food and Agriculture Organization of the United Nations and World Health Organization Working Group Report (2002). http://www.fao.org/es/esn/food/foodandfood_probio_en.stm Available from, Accessed 2004 June 28
14. Fitzsimons N.A., Akkermans A.D., de Vos W.M., and Vaughan E.E. Bacterial gene expression detected in human faeces by reverse transcription-PCR. J. Microbiol. Methods 55 (2003) 133-140
15. Geoffroy M.C., Guyard C., Quatannens B., Pavan S., Lange M., and Mercenier A. Use of green fluorescent protein to tag lactic acid bacterium strains under development as live vaccine vectors. Appl. Environ. Microbiol. 66 (2000) 383-391
16. Goldin B.R., Gorbach S.L., Saxelin M., Barakat S., Gualtieri L., and Salminen S. Survival of Lactobacillus species (strain GG) in human gastrointestinal tract. Dig. Dis. Sci. 37 (1992) 121-128
17. Gruntzig V., Nold S.C., Zhou J., and Tiedje J.M. Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR. Appl. Environ. Microbiol. 67 (2001) 760-768
18. Haugland R.A., Vesper S.J., and Wymer L.J. Quantitative measurement of Stachybotrys chartarum conidia using real time detection of PCR products with the TaqMan(TM) fluorogenic probe system. Mol. Cell. Probes 13 (1999) 329-340
19. Hettinga D.H., and Reinbold G.W. The propionic acid bacteria - a review. I. J. Milk Food Technol. 35 (1972) 295-301
20. Hojo K., Yoda N., Tsuchita H., Ohtsu T., Seki K., Taketomo N., Murayama T., and Lino H. Effect of ingested culture of Propionibacterium freudenreichii ET-3 on fecal microflora and stool frequency in healthy females. Biosci. Microflora 21 (2002) 115-120
21. Huang Y., and Adams M.C. An in vitro model for investigating intestinal adhesion of potential dairy propionibacteria probiotic strains using cell line C2BBe1. Lett. Appl. Microbiol. 36 (2003) 213-216
22. Huang Y., and Adams M.C. In vitro assessment of the upper gastrointestinal tolerance of potential probiotic dairy propionibacteria. Int. J. Food Microbiol. 91 (2004) 253-260
23. Huang Y., Kotula L., and Adams M.C. The in vivo assessment of safety and gastrointestinal survival of an orally administered novel probiotic, Propionibacterium jensenii 702, in a male Wistar rat model. Food Chem. Toxicol. 41 (2003) 1781-1787
24. Hugenholtz J., Hunik J., Santos H., and Smid E. Nutraceutical production by propionibacteria. Lait 82 (2002) 103-112
25. Jan G., Rouault A., and Maubois J.L. Acid stress susceptibility and acid adaptation of Propionibacterium freudenreichii subsp. shermanii. Lait 80 (2000) 325-336
26. Jan G., Leverrier P., Pichereau V., and Boyaval P. Changes in protein synthesis and morphology during acid adaptation of Propionibacterium freudenreichii. Appl. Environ. Microbiol. 67 (2001) 2029-2036
27. Jan G., Belzacq A.S., Haouzi D., Rouault A., Metivier D., Kroemer G., and Brenner C. Propionibacteria induce apoptosis of colorectal carcinoma cells via short-chain fatty acids acting on mitochondria. Cell Death Differ. 9 (2002) 179-188
28. Jan G., Leverrier P., and Roland N. Survival and beneficial effects of propionibacteria in the human gut: in vivo and in vitro investigations. Lait 82 (2002) 131-144
29. Jourdan A.D., Johnson S.C., and Wesley I.V. Development of a fluorogenic 5′ nuclease PCR assay for detection of the ail gene of pathogenic Yersinia enterocolitica. Appl. Environ. Microbiol. 66 (2000) 3750-3755
30. Leverrier P., Dimova D., Pichereau V., Auffray Y., Boyaval P., and Jan G. Susceptibility and adaptive response to bile salts in Propionibacterium freudenreichii: physiological and proteomic analysis. Appl. Environ. Microbiol. 69 (2003) 3809-3818
31. Leverrier P., Vissers J.P., Rouault A., Boyaval P., and Jan G. Mass spectrometry proteomic analysis of stress adaptation reveals both common and distinct response pathways in Propionibacterium freudenreichii. Arch. Microbiol. 181 (2004) 215-230
32. Leverrier P., Fremont Y., Rouault A., Boyaval P., and Jan G. In vitro tolerance to digestive stresses of propionibacteria: influence of food matrices. Food Microbiol. 22 (2005) 11-18
33. Lindecrona R.H., Jensen T.K., Andersen P.H., and Moller K. Application of a 5′ nuclease assay for detection of Lawsonia intracellularis in fecal samples from pigs. J. Clin. Microbiol. 40 (2002) 984-987
34. Malik A.C., Reinbold G.W., and Vedamuthu E.R. An evaluation of the taxonomy of Propionibacterium. Can. J. Microbiol. 14 (1968) 1185-1191
35. Marteau P., Cuillerier E., Meance S., Gerhardt M.F., Myara A., Bouvier M., Bouley C., Tondu F., Bommelaer G., and Grimaud J.C. Bifidobacterium animalis strain DN-173 010 shortens the colonic transit time in healthy women: a double-blind, randomized, controlled study. Aliment. Pharmacol. Ther. 16 (2002) 587-593
36. Matsuki T., Watanabe K., Fujimoto J., Kado Y., Takada T., Matsumoto K., and Tanaka R. Quantitative PCR with 16S rRNA-gene-targeted species-specific primers for analysis of human intestinal bifidobacteria. Appl. Environ. Microbiol. 70 (2004) 167-173
37. Meurice G., Jacob D., Deborde C., Chaillou S., Rouault A., Leverrier P., Jan G., Thierry A., Maillard M.B., Amet P., Lalande M., Zagorec M., Boyaval P., and Dimova D. Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: progress and first bioinformatic analysis. Lait 84 (2004) 15-24
38. Michel C., Roland N., Lecannu G., Hervé C., Avice J.C., Rival M., and Cherbut C. Colonic infusion with Propionibacterium acidipropionici reduces severity of chemically-induced colitis in rats. Lait 85 (2005) 99-111
39. Oozeer R., Goupil-Feuillerat N., Alpert C.A., van de G.M., Anba J., Mengaud J., and Corthier G. Lactobacillus casei is able to survive and initiate protein synthesis during its transit in the digestive tract of human flora-associated mice. Appl. Environ. Microbiol. 68 (2002) 3570-3574
40. Oozeer R., Furet J.P., Goupil-Feuillerat N., Anba J., Mengaud J., and Corthier G. Differential activities of four Lactobacillus casei promoters during bacterial transit through the gastrointestinal tracts of human-microbiota-associated mice. Appl. Environ. Microbiol. 71 (2005) 1356-1363
41. Ouwehand A.C., Lagstrom H., Suomalainen T., and Salminen S. Effect of probiotics on constipation, fecal azoreductase activity and fecal mucin content in the elderly. Ann. Nutr. Metab. 46 (2002) 159-162
42. Ouwehand A.C., Salminen S., and Isolauri E. Probiotics: an overview of beneficial effects. Anton. Leeuw. Int. J. G. 82 (2002) 279-289
43. Perez Chaia A., and Zarate G. Dairy propionibacteria from milk or cheese diets remain viable and enhance propionic acid production in the mouse cecum. Lait 85 (2005) 85-98
44. Pérez Chaia A., Nader de Macias M.E., and Oliver G. Propionibacteria in the gut: effect on some metabolic activities of the host. Lait 75 (1995) 435-445
45. Pérez Chaia A., Zarate G., and Oliver G. The probiotic properties of propionibacteria. Lait 79 (1999) 175-185
46. Requena T., Burton J., Matsuki T., Munro K., Simon M.A., Tanaka R., Watanabe K., and Tannock G.W. Identification, detection, and enumeration of human Bifidobacterium species by PCR targeting the transaldolase gene. Appl. Environ. Microbiol. 68 (2002) 2420-2427
47. Saito Y., Sakamoto M., Takizawa S., and Benno Y. Monitoring the cell number and viability of Lactobacillus helveticus GCL1001 in human feces by PCR methods. FEMS Microbiol. Lett. 231 (2004) 125-130
48. Satomi K., Kurihara H., Isawa K., Mori H., and Kaneko T. Effects of culture-powder of Propionibacterium freudenreichii ET-3 on fecal microflora of normal adults. Biosci. Microflora 18 (1999) 27-30
49. Savill M.G., Murray S.R., Scholes P., Maas E.W., McCormick R.E., Moore E.B., and Gilpin B.J. Application of polymerase chain reaction (PCR) and TaqMan PCR techniques to the detection and identification of Rhodococcus coprophilus in faecal samples. J. Microbiol. Methods 47 (2001) 355-368
50. Saxelin M., Ahokas M., and Salminen S. Dose-response on the fecal colonization of Lactobacillus strain GG administered in 2 different formulations. Microb. Ecol. Health Dis. 6 (1993) 119-122
51. Scheppach W., Bartram H.P., and Richter F. Role of short-chain fatty acids in the prevention of colorectal cancer. Eur. J. Cancer 31A (1995) 1077-1080
52. Sharma V.K., Dean-Nystrom E.A., and Casey T.A. Semi-automated fluorogenic PCR assays (TaqMan) forrapid detection of Escherichia coli O157:H7 and other shiga toxigenic E. coli. Mol. Cell. Probes 13 (1999) 291-302
53. Stults J.R., Snoeyenbos-West O., Methe B., Lovley D.R., and Chandler D.P. Application of the 5′ fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments. Appl. Environ. Microbiol. 67 (2001) 2781-2789
54. Suomalainen T.H., and Mayra-Makinen A.M. Propionic acid bacteria as protective cultures in fermented milks and breads. Lait 79 (1999) 165-174
55. Suzuki M.T., Taylor L.T., and DeLong E.F. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl. Environ. Microbiol. 66 (2000) 4605-4614
56. Takayama K., and Kjelleberg S. The role of RNA stability during bacterial stress responses and starvation. Environ. Microbiol. 2 (2000) 355-365
57. Thiel A., Eikmanns B., Salminen S., and Ouwehand A.C. In vitro adhesion of propionibacteria to human intestinal mucus. Ital. J. Food Sci. 16 (2004) 245-253
58. Thierry A., and Madec M.N. Enumeration of propionibacteria in raw milk using a new selective medium. Lait 75 (1995) 315-323
59. Thierry A., and Maillard M.B. Production of cheese flavour compounds derived from amino acid catabolism by Propionibacterium freudenreichii. Lait 82 (2002) 17-32
60. Thierry A., Maillard M.B., Herve C., Richoux R., and Lortal S. Varied volatile compounds are produced by Propionibacterium freudenreichii in Emmental cheese. Food Chem. 87 (2004) 439-446
61. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
62. von Wright A., Vilpponen-Salmela T., Llopis M.P., Collins K., Kiely B., Shanahan F., and Dunne C. The survival and colonic adhesion of Bifidobacterium infantis in patients with ulcerative colitis. Int. Dairy J. 12 (2002) 197-200
63. Witham P.K., Yamashiro C.T., Livak K.J., and Batt C.A. A PCR-based assay for the detection of Escherichia coli shiga-like toxin genes in ground beef. Appl. Environ. Microbiol. 62 (1996) 1347-1353
64. Wood H.G. Metabolic cycles in the fermentation of propionic acid bacteria. In: Eastbrook R.W., and Srera P. (Eds). Current Topics in Cellular Regulation (1981), Acadelic press, New York 255-287
65. Yuki N., Watanabe K., Mike A., Tagami Y., Tanaka R., Ohwaki M., and Morotomi M. Survival of a probiotic, Lactobacillus casei strain Shirota, in the gastrointestinal tract: selective isolation from faeces and identification using monoclonal antibodies. Int. J. Food Microbiol. 48 (1999) 51-57
66. Zarate G., Chaia A.P., Gonzalez S., and Oliver G. Viability and beta-galactosidase activity of dairy propionibacteria subjected to digestion by artificial gastric and intestinal fluids. J. Food Prot. 63 (2000) 1214-1221
67. Zarate G., Gonzalez S., Perez Chaia A., and Oliver G. Effect of bile on the galactosidase activity of dairy propionibacteria. Lait 80 (2000) 267-276
68. Zarate G., Morata D.A.V., Perez C.A., and Gonzalez S. Some factors affecting the adherence of probiotic Propionibacterium acidipropionici CRL 1198 to intestinal epithelial cells. Can. J. Microbiol. 48 (2002) 449-457
69. Zoetendal E.G., Akkermans A.D.L., and de Vos W.M. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64 (1998) 3854-3859