메뉴 건너뛰기




Volumn 84, Issue 1-2, 2004, Pages 15-24

Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: Progress and first bioinformatic analysis

Author keywords

Bioinformatics; Genome annotation; Genomics; Propionibacterium; Whole genome sequencing

Indexed keywords

CARBOXYLIC ACIDS; DAIRY PRODUCTS; GENETIC ENGINEERING; METABOLISM; METABOLITES; PHYSIOLOGY; PROTEINS;

EID: 10744223332     PISSN: 00237302     EISSN: None     Source Type: Journal    
DOI: 10.1051/lait:2003041     Document Type: Conference Paper
Times cited : (14)

References (34)
  • 2
    • 0037046560 scopus 로고    scopus 로고
    • Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
    • Bentley S.D. et al., Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2), Nature 417 (2002) 141-147.
    • (2002) Nature , vol.417 , pp. 141-147
    • Bentley, S.D.1
  • 3
    • 0024690140 scopus 로고
    • Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S rRNA sequences
    • Charfreitag O., Stackebrandt E., Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S rRNA sequences, J. Gen. Microbiol. 135 (1989) 2065-2070.
    • (1989) J. Gen. Microbiol. , vol.135 , pp. 2065-2070
    • Charfreitag, O.1    Stackebrandt, E.2
  • 4
    • 0032508046 scopus 로고    scopus 로고
    • Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    • Cole S.T. et al., Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence, Nature 393 (1998) 537-544.
    • (1998) Nature , vol.393 , pp. 537-544
    • Cole, S.T.1
  • 5
    • 1342298904 scopus 로고
    • Conference Proceedings of 1st International Symposium on Propionibacteria
    • Rennes, France, 17-19 May 1995
    • Conference Proceedings of 1st International Symposium on Propionibacteria, Rennes, France, 17-19 May 1995, Lait 75 (1995) 305-487.
    • (1995) Lait , vol.75 , pp. 305-487
  • 6
    • 1342341325 scopus 로고    scopus 로고
    • Conference Proceedings of 2nd International Symposium on Propionibacteria
    • Cork, Ireland, 25-27 June 1998
    • Conference Proceedings of 2nd International Symposium on Propionibacteria, Cork, Ireland, 25-27 June 1998, Lait 79 (1999) 1-200.
    • (1999) Lait , vol.79 , pp. 1-200
  • 7
    • 1342320103 scopus 로고    scopus 로고
    • Conference Proceedings of 3rd International Symposium on Propionibacteria
    • Zurich, Switzerland, 8-11 July 2001
    • Conference Proceedings of 3rd International Symposium on Propionibacteria, Zurich, Switzerland, 8-11 July 2001, Lait 82 (2002) 1-150.
    • (2002) Lait , vol.82 , pp. 1-150
  • 8
    • 0031872391 scopus 로고    scopus 로고
    • Classification and identification of propionibacteria based on ribosomal RNA genes and PCR
    • Dasen G.H., Smutny J., Teuber M., Meile L., Classification and identification of propionibacteria based on ribosomal RNA genes and PCR, Biochem. J. 21 (1998) 251-259.
    • (1998) Biochem. J. , vol.21 , pp. 251-259
    • Dasen, G.H.1    Smutny, J.2    Teuber, M.3    Meile, L.4
  • 10
    • 26344480218 scopus 로고    scopus 로고
    • Combining NMR study and genomic analysis to understand glucose metabolism of Propionibacterium freudenreichii subsp. shermanii
    • 6-11 October 2002, Tuscany, Italy
    • Déborde C., Meurice G., Jacob D., Boyaval P., Dimova D., Combining NMR study and genomic analysis to understand glucose metabolism of Propionibacterium freudenreichii subsp. shermanii, Poster at Metabolic Engineering IV: Applied System Biology, 6-11 October 2002, Tuscany, Italy, 2002.
    • (2002) Poster at Metabolic Engineering IV: Applied System Biology
    • Déborde, C.1    Meurice, G.2    Jacob, D.3    Boyaval, P.4    Dimova, D.5
  • 12
    • 0035125986 scopus 로고    scopus 로고
    • In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
    • Edwards J.S., Ibarra R.U., Palsson B.O., In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data, Nat. Biotechnol. 19 (2001) 125-130.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 125-130
    • Edwards, J.S.1    Ibarra, R.U.2    Palsson, B.O.3
  • 13
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann R.D. et al., Whole-genome random sequencing and assembly of Haemophilus influenzae Rd, Science 269 (1995) 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 15
    • 0033064714 scopus 로고    scopus 로고
    • Starts of bacterial genes: Estimating the reliability of computer predictions
    • Frishman D., Mironov A., Gelfand M., Starts of bacterial genes: estimating the reliability of computer predictions, Gene 234 (1999) 257-265.
    • (1999) Gene , vol.234 , pp. 257-265
    • Frishman, D.1    Mironov, A.2    Gelfand, M.3
  • 16
    • 0000467882 scopus 로고
    • Determination of genome size of Propionibacterium species by pulse-field gel electrophoresis
    • Gautier M., Mouchel N., Rouault A., Sanséau P., Determination of genome size of Propionibacterium species by pulse-field gel electrophoresis, Lait 72 (1992) 421-426.
    • (1992) Lait , vol.72 , pp. 421-426
    • Gautier, M.1    Mouchel, N.2    Rouault, A.3    Sanséau, P.4
  • 17
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D., Abajian C., Green P., Consed: A graphical tool for sequence finishing, Genome Res. 8 (1998) 195-202.
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 19
    • 0036693743 scopus 로고    scopus 로고
    • Discovering lactic acid bacteria by genomics
    • Klaenhammer T. et al., Discovering lactic acid bacteria by genomics, Antonie van Leeuwenhoek 82 (2002) 29-58.
    • (2002) Antonie van Leeuwenhoek , vol.82 , pp. 29-58
    • Klaenhammer, T.1
  • 20
    • 0032836041 scopus 로고    scopus 로고
    • Genomics for food biotechnology: Prospects of the use of high-through-put technologies for the improvement of food microorganisms
    • Kuipers O.P., Genomics for food biotechnology: prospects of the use of high-through-put technologies for the improvement of food microorganisms, Curr. Opin. Biotechnol. 10 (1999) 511-516.
    • (1999) Curr. Opin. Biotechnol. , vol.10 , pp. 511-516
    • Kuipers, O.P.1
  • 21
    • 0037479837 scopus 로고    scopus 로고
    • Susceptibility and adaptive response to bile salts in Propionibacterium freudenreichii: Physiological and proteomic analysis
    • Leverrier P., Dimova D., Pichereau V., Auffray Y., Boyaval P., Jan G., Susceptibility and adaptive response to bile salts in Propionibacterium freudenreichii: physiological and proteomic analysis, Appl. Environ. Microbiol. 69 (2003) 3809-3818.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3809-3818
    • Leverrier, P.1    Dimova, D.2    Pichereau, V.3    Auffray, Y.4    Boyaval, P.5    Jan, G.6
  • 22
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • Lobry J.R., Asymmetric substitution patterns in the two DNA strands of bacteria, Mol. Biol. Evol. 13 (1996) 660-665.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 660-665
    • Lobry, J.R.1
  • 23
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., Eddy S.R., tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucl. Acids Res. 25 (1997) 955-964.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 26
    • 0037251964 scopus 로고    scopus 로고
    • The InterPro Database, 2003 brings increased coverage and new features
    • Mulder N.J. et al., The InterPro Database, 2003 brings increased coverage and new features, Nucl. Acids Res. 31 (2003) 315-318.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 315-318
    • Mulder, N.J.1
  • 27
    • 0027246567 scopus 로고
    • Genome analysis of Propionibacterium freudenreichii by pulse-field gel electrophoresis
    • Rehberger T.G., Genome analysis of Propionibacterium freudenreichii by pulse-field gel electrophoresis, Curr. Microbiol. 27 (1993) 21-25.
    • (1993) Curr. Microbiol. , vol.27 , pp. 21-25
    • Rehberger, T.G.1
  • 28
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P., Longden I., Bleasby A., EMBOSS: The European Molecular Biology Open Software Suite, Trends Genet. 16 (2000) 276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 29
    • 0033198729 scopus 로고    scopus 로고
    • Translation in Bacillus subtilis: Role and trends of initiation and termination, insights from a genome analysis
    • Rocha E.D.C., Danchin A., Viari A., Translation in Bacillus subtilis: role and trends of initiation and termination, insights from a genome analysis, Nucl. Acids Res. 27 (1999) 3567-3576.
    • (1999) Nucl. Acids Res. , vol.27 , pp. 3567-3576
    • Rocha, E.D.C.1    Danchin, A.2    Viari, A.3
  • 30
    • 0037203829 scopus 로고    scopus 로고
    • Genome sequence of the plant pathogen Ralstonia solanacearum
    • Salanoubat M. et al., Genome sequence of the plant pathogen Ralstonia solanacearum, Nature 415 (2002) 497-502.
    • (2002) Nature , vol.415 , pp. 497-502
    • Salanoubat, M.1
  • 31
    • 0043122995 scopus 로고    scopus 로고
    • FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy maturated eukaryotic sequences
    • Schiex T., Gouzy J., Moisan A., de Oliveira Y., FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy maturated eukaryotic sequences, Nucl. Acids Res. 31 (2003) 3738-3741.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 3738-3741
    • Schiex, T.1    Gouzy, J.2    Moisan, A.3    De Oliveira, Y.4
  • 32
    • 0016154301 scopus 로고
    • The 3' -terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
    • Shine J., Dalgarno L., The 3' -terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites, Proc. Natl. Acad. Sci. USA 71 (1974) 1342-1346.
    • (1974) Proc. Natl. Acad. Sci. USA , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 33
    • 0035882419 scopus 로고    scopus 로고
    • Characterization of the 16S-23S and 23S-5S rRNA intergenic spacer regions of dairy propionibacteria and their identification with species-specific primers by PCR
    • Tilsala-Timisjarvi A., Alatossava T., Characterization of the 16S-23S and 23S-5S rRNA intergenic spacer regions of dairy propionibacteria and their identification with species-specific primers by PCR, Int. J. Food Microbiol. 68 (2001) 45-52.
    • (2001) Int. J. Food Microbiol. , vol.68 , pp. 45-52
    • Tilsala-Timisjarvi, A.1    Alatossava, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.