-
1
-
-
0022974809
-
Sequence requirements for splicing of higher eukaryotic nuclear pre-mRNA
-
Aebi M, Hornig H, Padgett RA, Reiser J, Weissmann C. 1986. Sequence requirements for splicing of higher eukaryotic nuclear pre-mRNA. Cell 47:555-565.
-
(1986)
Cell
, vol.47
, pp. 555-565
-
-
Aebi, M.1
Hornig, H.2
Padgett, R.A.3
Reiser, J.4
Weissmann, C.5
-
2
-
-
0035097484
-
Familial dysautonomia is caused by mutations of the IKAP gene
-
Anderson SL, Coli R, Daly IW, Kichula EA, Rork MJ, Volpi SA, Ekstein J, Rubin BY. 2001. Familial dysautonomia is caused by mutations of the IKAP gene. Am J Hum Genet 68:753-758.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 753-758
-
-
Anderson, S.L.1
Coli, R.2
Daly, I.W.3
Kichula, E.A.4
Rork, M.J.5
Volpi, S.A.6
Ekstein, J.7
Rubin, B.Y.8
-
3
-
-
0141681935
-
EGCG corrects aberrant splicing of IKAP mRNA in cells from patients with familial dysautonomia
-
Anderson SL, Qiu J, Rubin BY. 2003. EGCG corrects aberrant splicing of IKAP mRNA in cells from patients with familial dysautonomia. Biochem Biophys Res Commun 310:627-633.
-
(2003)
Biochem Biophys Res Commun
, vol.310
, pp. 627-633
-
-
Anderson, S.L.1
Qiu, J.2
Rubin, B.Y.3
-
4
-
-
33745144314
-
Stimulating full-length SMN2 expression by delivering bifunctional RNAs via a viral vector
-
Baughan T, Shababi M, Coady TH, Dickson AM, Tullis GE, Lorson CL. 2006. Stimulating full-length SMN2 expression by delivering bifunctional RNAs via a viral vector. Mol Ther 14:54-62.
-
(2006)
Mol Ther
, vol.14
, pp. 54-62
-
-
Baughan, T.1
Shababi, M.2
Coady, T.H.3
Dickson, A.M.4
Tullis, G.E.5
Lorson, C.L.6
-
5
-
-
0026661948
-
Protein components specifically associated with prespliceosome and spliceosome complexes
-
Bennett M, Michaud S, Kingston J, Reed R. 1992. Protein components specifically associated with prespliceosome and spliceosome complexes. Genes Dev 6:1986-2000.
-
(1992)
Genes Dev
, vol.6
, pp. 1986-2000
-
-
Bennett, M.1
Michaud, S.2
Kingston, J.3
Reed, R.4
-
6
-
-
0034886605
-
RNA splicing at human immunodeficiency virus type 1 3′ splice site A2 is regulated by binding of hnRNP A/B proteins to an exonic splicing silencer clement
-
Bilodeau PS, Domsic JK, Mayeda A, Krainer AR, Stoltzfus CM. 2001. RNA splicing at human immunodeficiency virus type 1 3′ splice site A2 is regulated by binding of hnRNP A/B proteins to an exonic splicing silencer clement. J Virol 75:8487-3497.
-
(2001)
J Virol
, vol.75
, pp. 8487-3497
-
-
Bilodeau, P.S.1
Domsic, J.K.2
Mayeda, A.3
Krainer, A.R.4
Stoltzfus, C.M.5
-
7
-
-
0026748223
-
Activation of c-src neuron-specific splicing by an unusual RNA element in vivo and in vitro
-
Black DL. 1992. Activation of c-src neuron-specific splicing by an unusual RNA element in vivo and in vitro. Cell 69:795-807.
-
(1992)
Cell
, vol.69
, pp. 795-807
-
-
Black, D.L.1
-
8
-
-
3142675143
-
Ser/Arg-rich protein-mediated communication between U1 and U2 small nuclear ribonucleoprotein particles
-
Boukis LA, Lin N, Furuyama S, Bruzik JP. 2004. Ser/Arg-rich protein-mediated communication between U1 and U2 small nuclear ribonucleoprotein particles. J Biol Chem 279:29647-29653.
-
(2004)
J Biol Chem
, vol.279
, pp. 29647-29653
-
-
Boukis, L.A.1
Lin, N.2
Furuyama, S.3
Bruzik, J.P.4
-
9
-
-
1942469356
-
Comparative analysis detects dependencies among the 5′ splice-site positions
-
Carmel I, Tal S, Vig I, Ast G. 2004. Comparative analysis detects dependencies among the 5′ splice-site positions. RNA 10:828-840.
-
(2004)
RNA
, vol.10
, pp. 828-840
-
-
Carmel, I.1
Tal, S.2
Vig, I.3
Ast, G.4
-
10
-
-
0036544654
-
Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1
-
Cartegni L, Krainer AR. 2002. Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1. Nat Genet 30:377-384.
-
(2002)
Nat Genet
, vol.30
, pp. 377-384
-
-
Cartegni, L.1
Krainer, A.R.2
-
11
-
-
0037313165
-
Correction of disease-associated exon skipping by synthetic exon-specific activators
-
Cartegni L, Krainer AR. 2003. Correction of disease-associated exon skipping by synthetic exon-specific activators. Nat Struct Biol 10:120-125.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 120-125
-
-
Cartegni, L.1
Krainer, A.R.2
-
12
-
-
0042242582
-
ESEfinder: A web resource to identify exonic splicing enhancers
-
Cartegni L, Wang J, Zhu Z, Zhang MQ, Krainer AR. 2003. ESEfinder: a web resource to identify exonic splicing enhancers. Nucleic Acids Res 31:3568-3571.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3568-3571
-
-
Cartegni, L.1
Wang, J.2
Zhu, Z.3
Zhang, M.Q.4
Krainer, A.R.5
-
13
-
-
0028037298
-
Familial growth hormone deficiency: A model of dominant and recessive mutations affecting a monomeric protein
-
Cogan JD, Phillips III JA, Schenkman SS, Milner RD, Sakati N. 1994. Familial growth hormone deficiency: a model of dominant and recessive mutations affecting a monomeric protein. J Clin Endocrinol Metab 79:1261-1265.
-
(1994)
J Clin Endocrinol Metab
, vol.79
, pp. 1261-1265
-
-
Cogan, J.D.1
Phillips III, J.A.2
Schenkman, S.S.3
Milner, R.D.4
Sakati, N.5
-
14
-
-
0028939315
-
The U1 small nuclear ribonucleoprotein/5′ splice site interaction affects U2AF65 binding to the downstream 3′ splice site
-
Côté J, Beaudoin J, Tacke R, Chabot B. 1995. The U1 small nuclear ribonucleoprotein/5′ splice site interaction affects U2AF65 binding to the downstream 3′ splice site. J Biol Chem 270:4031-4036.
-
(1995)
J Biol Chem
, vol.270
, pp. 4031-4036
-
-
Côté, J.1
Beaudoin, J.2
Tacke, R.3
Chabot, B.4
-
15
-
-
0242590092
-
An element in the 5′ common exon of the NCAM alternative splicing unit interacts with SR proteins and modulates 5′ splice site selection
-
Côté J, Simard MJ, Chabot B. 1999. An element in the 5′ common exon of the NCAM alternative splicing unit interacts with SR proteins and modulates 5′ splice site selection. Nucleic Acids Res 27:2529-2537.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 2529-2537
-
-
Côté, J.1
Simard, M.J.2
Chabot, B.3
-
16
-
-
0037371609
-
Tissue-specific reduction in splicing efficiency of IKBKAP due to the major mutation associated with familial dysautonomia
-
Cuajungco MP, Leyne M, Mull J, Gill SP, Lu W, Zagzag D, Axelrod FB, Maayan C, Gusella JF, Slaugenhaupt SA. 2003. Tissue-specific reduction in splicing efficiency of IKBKAP due to the major mutation associated with familial dysautonomia. Am J Hum Genet 72:749-758.
-
(2003)
Am J Hum Genet
, vol.72
, pp. 749-758
-
-
Cuajungco, M.P.1
Leyne, M.2
Mull, J.3
Gill, S.P.4
Lu, W.5
Zagzag, D.6
Axelrod, F.B.7
Maayan, C.8
Gusella, J.F.9
Slaugenhaupt, S.A.10
-
17
-
-
33745132168
-
Functional coupling of RNAP II transcription to spliceosome assembly
-
Das R, Dufu K, Romney B, Feldt M, Elenko M, Reed R. 2006. Functional coupling of RNAP II transcription to spliceosome assembly. Genes Dev 20:1100-1109.
-
(2006)
Genes Dev
, vol.20
, pp. 1100-1109
-
-
Das, R.1
Dufu, K.2
Romney, B.3
Feldt, M.4
Elenko, M.5
Reed, R.6
-
18
-
-
0038603946
-
-
Eperon IC, Muntoni F. 2003. Response to Buratti et al.: Can a patch in a skipped exon make the pre-mRNA splicing machine run better? Trends Mol Med 9:233-234.
-
Eperon IC, Muntoni F. 2003. Response to Buratti et al.: Can a "patch" in a skipped exon make the pre-mRNA splicing machine run better? Trends Mol Med 9:233-234.
-
-
-
-
19
-
-
16244373960
-
The SR protein SC35 is responsible for aberrant splicing of the E1{alpha} pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis
-
Gabut M, Mine M, Marsac C, Brivet M, Tazi J, Soret J. 2005. The SR protein SC35 is responsible for aberrant splicing of the E1{alpha} pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis. Mol Cell Biol 25:3286-3294.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 3286-3294
-
-
Gabut, M.1
Mine, M.2
Marsac, C.3
Brivet, M.4
Tazi, J.5
Soret, J.6
-
21
-
-
33644543767
-
Modulation of 5′ splice site selection using tailed oligonucleotides carrying splicing signals
-
Gendron D, Carriero S, Garneau D, Villemaire J, Klinck R, Elela SA, Damha MJ, Chabot B. 2006. Modulation of 5′ splice site selection using tailed oligonucleotides carrying splicing signals. BMC Biotechnol 6:5.
-
(2006)
BMC Biotechnol
, vol.6
, pp. 5
-
-
Gendron, D.1
Carriero, S.2
Garneau, D.3
Villemaire, J.4
Klinck, R.5
Elela, S.A.6
Damha, M.J.7
Chabot, B.8
-
22
-
-
0033834946
-
Coupled in vitro synthesis and splicing of RNA polymerase II transcripts
-
Ghosh S, Garcia-Blanco MA. 2000. Coupled in vitro synthesis and splicing of RNA polymerase II transcripts. RNA 6:1325-1334.
-
(2000)
RNA
, vol.6
, pp. 1325-1334
-
-
Ghosh, S.1
Garcia-Blanco, M.A.2
-
23
-
-
0034743627
-
The role of U2AF35 and U2AF65 in enhancer-dependent splicing
-
Graveley BR, Hertel KJ, Maniatis T. 2001. The role of U2AF35 and U2AF65 in enhancer-dependent splicing. RNA 7:806-818.
-
(2001)
RNA
, vol.7
, pp. 806-818
-
-
Graveley, B.R.1
Hertel, K.J.2
Maniatis, T.3
-
24
-
-
21844480060
-
A combinatorial code for splicing silencing: UAGG and GGGG motifs
-
Han K, Yeo G, An P, Burge CB, Grabowski PJ. 2005. A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol 3:e158.
-
(2005)
PLoS Biol
, vol.3
-
-
Han, K.1
Yeo, G.2
An, P.3
Burge, C.B.4
Grabowski, P.J.5
-
25
-
-
0344074646
-
Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors
-
Hanamura A, Caceres JF, Mayeda A, Franza BR, Jr, Krainer AR. 1998. Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors. RNA 4:430-444.
-
(1998)
RNA
, vol.4
, pp. 430-444
-
-
Hanamura, A.1
Caceres, J.F.2
Mayeda, A.3
Franza Jr, B.R.4
Krainer, A.R.5
-
26
-
-
0037169503
-
Purification and characterization of the human elongator complex
-
Hawkes NA, Otero G, Winkler GS, Marshall N, Dahmus ME, Krappmann D, Scheidereit C, Thomas CL, Schiavo G, Erdjument-Bromage H, Tempst P, Svejstrup JQ. 2002. Purification and characterization of the human elongator complex. J Biol Chem 277:3047-3052.
-
(2002)
J Biol Chem
, vol.277
, pp. 3047-3052
-
-
Hawkes, N.A.1
Otero, G.2
Winkler, G.S.3
Marshall, N.4
Dahmus, M.E.5
Krappmann, D.6
Scheidereit, C.7
Thomas, C.L.8
Schiavo, G.9
Erdjument-Bromage, H.10
Tempst, P.11
Svejstrup, J.Q.12
-
27
-
-
33745220323
-
Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns
-
Hicks MJ, Yang CR, Kotlajich MV, Hertel KJ. 2006. Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns. PLoS Biol 4:e147.
-
(2006)
PLoS Biol
, vol.4
-
-
Hicks, M.J.1
Yang, C.R.2
Kotlajich, M.V.3
Hertel, K.J.4
-
28
-
-
33644877169
-
HOLLYWOOD: A comparative relational database of alternative splicing
-
Holste D, Huo G, Tung V, Burge CB. 2006. HOLLYWOOD: a comparative relational database of alternative splicing. Nucleic Acids Res 34:D56-D62.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Holste, D.1
Huo, G.2
Tung, V.3
Burge, C.B.4
-
29
-
-
18744384006
-
Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch
-
Hou VC, Lersch R, Gee SL, Ponthier JL, Lo AJ, Wu M, Turck CW, Koury M, Krainer AR, Mayeda A, Conboy JG. 2002. Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J 21:6195-6204.
-
(2002)
EMBO J
, vol.21
, pp. 6195-6204
-
-
Hou, V.C.1
Lersch, R.2
Gee, S.L.3
Ponthier, J.L.4
Lo, A.J.5
Wu, M.6
Turck, C.W.7
Koury, M.8
Krainer, A.R.9
Mayeda, A.10
Conboy, J.G.11
-
30
-
-
11144328200
-
A novel intronic cis element, ISE/ ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence
-
Hovhannisyan RH, Carstens RP. 2005. A novel intronic cis element, ISE/ ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence. Mol Cell Biol 25:250-263.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 250-263
-
-
Hovhannisyan, R.H.1
Carstens, R.P.2
-
31
-
-
17044427579
-
Serine/ arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers
-
Ibrahim EC, Schaal TD, Hertel KJ, Reed R, Maniatis T. 2005. Serine/ arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers. Proc Natl Acad Sci USA 102:5002-5007.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5002-5007
-
-
Ibrahim, E.C.1
Schaal, T.D.2
Hertel, K.J.3
Reed, R.4
Maniatis, T.5
-
32
-
-
0034073995
-
Aberrant splicing of tau pre-mRNA caused by intronic mutations associated with the inherited dementia frontotemporal dementia with parkinsonism linked to chromosome 17
-
Jiang Z, Cote J, Kwon JM, Goate AM, Wu JY. 2000. Aberrant splicing of tau pre-mRNA caused by intronic mutations associated with the inherited dementia frontotemporal dementia with parkinsonism linked to chromosome 17. Mol Cell Biol 20:4036-4048.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 4036-4048
-
-
Jiang, Z.1
Cote, J.2
Kwon, J.M.3
Goate, A.M.4
Wu, J.Y.5
-
33
-
-
0028881190
-
Cell type-specific expression of hnRNP proteins
-
Kamma H, Portman DS, Dreyfuss G. 1995. Cell type-specific expression of hnRNP proteins. Exp Cell Res 221:187-196.
-
(1995)
Exp Cell Res
, vol.221
, pp. 187-196
-
-
Kamma, H.1
Portman, D.S.2
Dreyfuss, G.3
-
34
-
-
0033080408
-
Molecular characterization of the hnRNP A2/B1 proteins: Tissue-specific expression and novel isoforms
-
Kamma H, Horiguchi H, Wan L, Matsui M, Fujiwara M, Fujimoto M, Yazawa T, Dreyfuss G. 1999. Molecular characterization of the hnRNP A2/B1 proteins: tissue-specific expression and novel isoforms. Exp Cell Res 246:399-411.
-
(1999)
Exp Cell Res
, vol.246
, pp. 399-411
-
-
Kamma, H.1
Horiguchi, H.2
Wan, L.3
Matsui, M.4
Fujiwara, M.5
Fujimoto, M.6
Yazawa, T.7
Dreyfuss, G.8
-
35
-
-
0028289188
-
Protein-protein interactions and 5′-splice-site recognition in mammalian mRNA precursors
-
Kohtz JD, Jamison SF, Will CL, Zuo P, Luhrmann R, Garcia-Blanco MA, Manley JL. 1994. Protein-protein interactions and 5′-splice-site recognition in mammalian mRNA precursors. Nature 368:119-124.
-
(1994)
Nature
, vol.368
, pp. 119-124
-
-
Kohtz, J.D.1
Jamison, S.F.2
Will, C.L.3
Zuo, P.4
Luhrmann, R.5
Garcia-Blanco, M.A.6
Manley, J.L.7
-
36
-
-
0034945672
-
Antisense effects in the cell nucleus: Modification of splicing
-
Kole R, Sazani P. 2001. Antisense effects in the cell nucleus: modification of splicing. Curr Opin Mol Ther 3:229-234.
-
(2001)
Curr Opin Mol Ther
, vol.3
, pp. 229-234
-
-
Kole, R.1
Sazani, P.2
-
37
-
-
0036787862
-
RNA polymerase II elongation factors of Saccharomyces cerevisiae: A targeted proteomics approach
-
Krogan NJ, Kim M, Ahn SH, Zhong G, Kobor MS, Cagney G, Emili A, Shilatifard A, Buratowski S, Greenblatt JF. 2002. RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach. Mol Cell Biol 22:6979-6992.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 6979-6992
-
-
Krogan, N.J.1
Kim, M.2
Ahn, S.H.3
Zhong, G.4
Kobor, M.S.5
Cagney, G.6
Emili, A.7
Shilatifard, A.8
Buratowski, S.9
Greenblatt, J.F.10
-
38
-
-
0036792889
-
A general role for splicing enhancers in exon definition
-
Lam BJ, Hertel KJ. 2002. A general role for splicing enhancers in exon definition. RNA 8:1233-1241.
-
(2002)
RNA
, vol.8
, pp. 1233-1241
-
-
Lam, B.J.1
Hertel, K.J.2
-
39
-
-
0023428459
-
In vitro splicing pathways of pre-mRNAs containing multiple intervening sequences?
-
Lang KM, Spritz RA. 1987. In vitro splicing pathways of pre-mRNAs containing multiple intervening sequences? Mol Cell Biol 7:3428-3437.
-
(1987)
Mol Cell Biol
, vol.7
, pp. 3428-3437
-
-
Lang, K.M.1
Spritz, R.A.2
-
40
-
-
0027143943
-
A splicing enhancer in the human fibronectin alternate ED1 exon interacts with SR proteins and stimulates U2 snRNP binding
-
Lavigueur A, La Branche H, Komblihtt AR, Chabot B. 1993. A splicing enhancer in the human fibronectin alternate ED1 exon interacts with SR proteins and stimulates U2 snRNP binding. Genes Dev 7:2405-2417.
-
(1993)
Genes Dev
, vol.7
, pp. 2405-2417
-
-
Lavigueur, A.1
La Branche, H.2
Komblihtt, A.R.3
Chabot, B.4
-
41
-
-
0035839471
-
-
Y, Takagi Y, Jiang Y, Tokunaga M, Erdjument-Bromage H, Tempst P, Kornberg RD. 2001. A multiprotein complex that interacts with RNA polymerase II elongator. J Biol Chem 276:29628-29631.
-
Y, Takagi Y, Jiang Y, Tokunaga M, Erdjument-Bromage H, Tempst P, Kornberg RD. 2001. A multiprotein complex that interacts with RNA polymerase II elongator. J Biol Chem 276:29628-29631.
-
-
-
-
42
-
-
0035949674
-
A computational analysis of sequence features involved in recognition of short introns
-
Lim LP, Burge CB. 2001. A computational analysis of sequence features involved in recognition of short introns. Proc Natl Acad Sci USA 98:11193-11198.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11193-11198
-
-
Lim, L.P.1
Burge, C.B.2
-
43
-
-
0035158730
-
A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes
-
Liu HX, Cartegni L, Zhang MQ, Krainer AR. 2001. A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes. Nat Genet 27:55-58.
-
(2001)
Nat Genet
, vol.27
, pp. 55-58
-
-
Liu, H.X.1
Cartegni, L.2
Zhang, M.Q.3
Krainer, A.R.4
-
44
-
-
0027175953
-
A T+6 to C+6 mutation in the donor splice site of COL3A1 IVS7 causes exon skipping and results in Ehlers-Danlos syndrome type IV
-
Lloyd J, Narcisi P, Richards A, Pope FM. 1993. A T+6 to C+6 mutation in the donor splice site of COL3A1 IVS7 causes exon skipping and results in Ehlers-Danlos syndrome type IV. J Med Genet 30:376-380.
-
(1993)
J Med Genet
, vol.30
, pp. 376-380
-
-
Lloyd, J.1
Narcisi, P.2
Richards, A.3
Pope, F.M.4
-
45
-
-
27944491171
-
In vitro coupled transcription splicing
-
Natalizio BJ, Garcia-Blanco MA. 2005. In vitro coupled transcription splicing. Methods 37:314-322.
-
(2005)
Methods
, vol.37
, pp. 314-322
-
-
Natalizio, B.J.1
Garcia-Blanco, M.A.2
-
46
-
-
17544401107
-
Seven novel sequence variants in the human low density lipoprotein receptor related protein 5 (LRP5) gene
-
Okubo M, Horinishi A, Kim DH, Yamamoto TT, Mutase T. 2002. Seven novel sequence variants in the human low density lipoprotein receptor related protein 5 (LRP5) gene. Hum Mutat 19:186.
-
(2002)
Hum Mutat
, vol.19
, pp. 186
-
-
Okubo, M.1
Horinishi, A.2
Kim, D.H.3
Yamamoto, T.T.4
Mutase, T.5
-
47
-
-
0032971711
-
Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation
-
Otero G, Fellows J, Li Y, de Bizemont T, Dirac AM, Gustafsson CM, Erdjument-Bromage H, Tempst P, Svejstrup JQ. 1999. Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. Mol Cell 3:109-118.
-
(1999)
Mol Cell
, vol.3
, pp. 109-118
-
-
Otero, G.1
Fellows, J.2
Li, Y.3
de Bizemont, T.4
Dirac, A.M.5
Gustafsson, C.M.6
Erdjument-Bromage, H.7
Tempst, P.8
Svejstrup, J.Q.9
-
48
-
-
0037899998
-
New type of disease causing mutations: The example of the composite exonic regulatory elements of splicing in CFTR exon 12
-
Pagani F, Stuani C, Tzetis M, Kanavakis E, Efthymiadou A, Doudounakis S, Casals T, Baralle FE. 2003. New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12. Hum Mol Genet 12:1111-1120.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1111-1120
-
-
Pagani, F.1
Stuani, C.2
Tzetis, M.3
Kanavakis, E.4
Efthymiadou, A.5
Doudounakis, S.6
Casals, T.7
Baralle, F.E.8
-
49
-
-
0036241663
-
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
-
Pokholok DK, Hannett NM, Young RA. 2002. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. Mol Cell 9:799-809.
-
(2002)
Mol Cell
, vol.9
, pp. 799-809
-
-
Pokholok, D.K.1
Hannett, N.M.2
Young, R.A.3
-
50
-
-
0034455721
-
Spatio-temporal expression of the trans-acting splicing factors SF2/ASF and heterogeneous ribonuclear proteins A1/A1B in the myometrium of the pregnant human uterus: A molecular mechanism for regulating regional protein isoform expression in vivo
-
Pollard AJ, Sparey C, Robson SC, Krainer AR, Europe-Finner GN. 2000. Spatio-temporal expression of the trans-acting splicing factors SF2/ASF and heterogeneous ribonuclear proteins A1/A1B in the myometrium of the pregnant human uterus: a molecular mechanism for regulating regional protein isoform expression in vivo. J Clin Endocrinol Metab 85:1928-1936.
-
(2000)
J Clin Endocrinol Metab
, vol.85
, pp. 1928-1936
-
-
Pollard, A.J.1
Sparey, C.2
Robson, S.C.3
Krainer, A.R.4
Europe-Finner, G.N.5
-
51
-
-
0037013195
-
Alternative splicing of the adenylyl cyclase stimulatory G-protein G alpha (s) is regulated by SF2/ASF and heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) and involves the use of an unusual TG 3′-splice Site
-
Pollard AJ, Krainer AR, Robson SC, Europe-Finner GN. 2002. Alternative splicing of the adenylyl cyclase stimulatory G-protein G alpha (s) is regulated by SF2/ASF and heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) and involves the use of an unusual TG 3′-splice Site. J Biol Chem 277:15241-15251.
-
(2002)
J Biol Chem
, vol.277
, pp. 15241-15251
-
-
Pollard, A.J.1
Krainer, A.R.2
Robson, S.C.3
Europe-Finner, G.N.4
-
52
-
-
15244355534
-
Elp1p, the yeast homolog of the FD disease syndrome protein, negatively regulates exocytosis independently of transcriptional elongation
-
Rahl PB, Chen CZ, Collins RN. 2005. Elp1p, the yeast homolog of the FD disease syndrome protein, negatively regulates exocytosis independently of transcriptional elongation. Mol Cell 17:841-853.
-
(2005)
Mol Cell
, vol.17
, pp. 841-853
-
-
Rahl, P.B.1
Chen, C.Z.2
Collins, R.N.3
-
53
-
-
0032534537
-
Co-transcriptional commitment to alternative splice site selection
-
Roberts GC, Gooding C, Mak HY, Proudfoor NJ, Smith CW. 1998. Co-transcriptional commitment to alternative splice site selection. Nucleic Acids Res 26:5568-5572.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 5568-5572
-
-
Roberts, G.C.1
Gooding, C.2
Mak, H.Y.3
Proudfoor, N.J.4
Smith, C.W.5
-
54
-
-
0027233694
-
A mutational analysis of the polypyrimidine tract of introns. Effects of sequence differences in pyrimidine tracts on splicing
-
Roscigno RF, Weiner M, Garcia-Blanco MA. 1993. A mutational analysis of the polypyrimidine tract of introns. Effects of sequence differences in pyrimidine tracts on splicing. J Biol Chem 268:11222-11229.
-
(1993)
J Biol Chem
, vol.268
, pp. 11222-11229
-
-
Roscigno, R.F.1
Weiner, M.2
Garcia-Blanco, M.A.3
-
55
-
-
0032947182
-
Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA
-
Schaal TD, Maniatis T. 1999. Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA. Mol Cell Biol 19:261-273.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 261-273
-
-
Schaal, T.D.1
Maniatis, T.2
-
56
-
-
0033018827
-
Exonic splicing enhancers contribute to the use of both 3′ and 5′ splice site usage of rat β-tropomyosin pre-mRNA
-
Selvakumar M, Helfman DM. 1999. Exonic splicing enhancers contribute to the use of both 3′ and 5′ splice site usage of rat β-tropomyosin pre-mRNA. RNA 5:378-394.
-
(1999)
RNA
, vol.5
, pp. 378-394
-
-
Selvakumar, M.1
Helfman, D.M.2
-
57
-
-
0025321246
-
Splice junctions, branch point sites, and exons: Sequence statistics, identification, and applications to genome project
-
Senapathy P, Shapiro MB, Harris NL. 1990. Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project. Methods Enzymol 183:252-278.
-
(1990)
Methods Enzymol
, vol.183
, pp. 252-278
-
-
Senapathy, P.1
Shapiro, M.B.2
Harris, N.L.3
-
58
-
-
0023651307
-
RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression
-
Shapiro MB, Senapathy P. 1987. RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression. Nucleic Acids Res 15:7155-7174.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 7155-7174
-
-
Shapiro, M.B.1
Senapathy, P.2
-
59
-
-
0030872854
-
Splicing efficiency of human immunodeficiency virus type 1 tat RNA is determined by both a suboptimal 3′ splice site and a 10 nucleotide exon splicing silencer element located within tat exon 2
-
Si Z, Amendt BA, Stoltzfus CM. 1997. Splicing efficiency of human immunodeficiency virus type 1 tat RNA is determined by both a suboptimal 3′ splice site and a 10 nucleotide exon splicing silencer element located within tat exon 2. Nucleic Acids Res 25:861-867.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 861-867
-
-
Si, Z.1
Amendt, B.A.2
Stoltzfus, C.M.3
-
60
-
-
0031841948
-
The exon splicing silencer in human immunodeficiency virus type 1 Tat exon 3 is bipartite and acts early in spliceosome assembly
-
Si ZH, Rauch D, Stoltzfus CM. 1998. The exon splicing silencer in human immunodeficiency virus type 1 Tat exon 3 is bipartite and acts early in spliceosome assembly. Mol Cell Biol 18:5404-5413.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 5404-5413
-
-
Si, Z.H.1
Rauch, D.2
Stoltzfus, C.M.3
-
61
-
-
0037388256
-
Bifuncrional antisense oligonucleotides provide a trans-acting splicing enhancer that stimulates SMN2 gene expression in patient fibroblasts
-
Skordis LA, Dunckley MG, Yue B, Eperon IC, Muntoni F. 2003. Bifuncrional antisense oligonucleotides provide a trans-acting splicing enhancer that stimulates SMN2 gene expression in patient fibroblasts. Proc Natl Acad Sci USA 100:4114-4119.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 4114-4119
-
-
Skordis, L.A.1
Dunckley, M.G.2
Yue, B.3
Eperon, I.C.4
Muntoni, F.5
-
62
-
-
0035089807
-
Tissue-specific expression of a splicing mutation in the IKBKAP gene causes familial dysautonomia
-
Slaugenhaupr SA. Blumenfeld A, Gill SP, Leyne M, Mull J, Cuajungco MP, Liebert CB, Chadwick B, Idelson M, Reznik L, Robbins C, Makalowska I, Btownstein M, Krappmann D, Scheidereit C, Maayan C, Axelrod FB, Gusella JF. 2001. Tissue-specific expression of a splicing mutation in the IKBKAP gene causes familial dysautonomia. Am J Hum Genet 68:598-605.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 598-605
-
-
Slaugenhaupr, S.A.1
Blumenfeld, A.2
Gill, S.P.3
Leyne, M.4
Mull, J.5
Cuajungco, M.P.6
Liebert, C.B.7
Chadwick, B.8
Idelson, M.9
Reznik, L.10
Robbins, C.11
Makalowska, I.12
Btownstein, M.13
Krappmann, D.14
Scheidereit, C.15
Maayan, C.16
Axelrod, F.B.17
Gusella, J.F.18
-
63
-
-
1242353105
-
Rescue of a human mRNA splicing defect by the plant cytokinin kinetin
-
Slaugenhaupt SA, Mull J, Leyne M, Cuajungco MP, Gill SP, Hims MM, Quintero F, Axelrod FB, Gusella JF. 2004. Rescue of a human mRNA splicing defect by the plant cytokinin kinetin. Hum Med Genet 13:429-436.
-
(2004)
Hum Med Genet
, vol.13
, pp. 429-436
-
-
Slaugenhaupt, S.A.1
Mull, J.2
Leyne, M.3
Cuajungco, M.P.4
Gill, S.P.5
Hims, M.M.6
Quintero, F.7
Axelrod, F.B.8
Gusella, J.F.9
-
64
-
-
0027214101
-
Scanning and competition between AGs are involved in 3′ splice site selection in mammalian introns
-
Smith CW, Chu TT, Nadal-Ginard B. 1993. Scanning and competition between AGs are involved in 3′ splice site selection in mammalian introns. Mol Cell Biol 13:4939-4952.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 4939-4952
-
-
Smith, C.W.1
Chu, T.T.2
Nadal-Ginard, B.3
-
65
-
-
0037903275
-
Human Gene Mutation Database (HGMD): 2003 update
-
Srenson PD, Ball EV, Morr M, Phillips AD, Shiel JA, Thomas NS, Abeysinghe S, Krawczak M, Cooper DN. 2003. Human Gene Mutation Database (HGMD): 2003 update. Hum Mutat 21:577-581.
-
(2003)
Hum Mutat
, vol.21
, pp. 577-581
-
-
Srenson, P.D.1
Ball, E.V.2
Morr, M.3
Phillips, A.D.4
Shiel, J.A.5
Thomas, N.S.6
Abeysinghe, S.7
Krawczak, M.8
Cooper, D.N.9
-
66
-
-
0020620321
-
Specific transcription and RNA splicing defects in five cloned beta-thalassaemia genes
-
Treisman R, Otkin SH, Maniatis T. 1983. Specific transcription and RNA splicing defects in five cloned beta-thalassaemia genes. Nature 302:591-596.
-
(1983)
Nature
, vol.302
, pp. 591-596
-
-
Treisman, R.1
Otkin, S.H.2
Maniatis, T.3
-
67
-
-
0346749521
-
Reprogramming alternative pre-messenger RNA splicing through the use of protein-binding antisense oligonucleotides
-
Villemaire J, Dion I, Elela SA, Chabot B. 2003. Reprogramming alternative pre-messenger RNA splicing through the use of protein-binding antisense oligonucleotides. J Biol Chem 278:50031-50039.
-
(2003)
J Biol Chem
, vol.278
, pp. 50031-50039
-
-
Villemaire, J.1
Dion, I.2
Elela, S.A.3
Chabot, B.4
-
68
-
-
0029258817
-
Intrinsic U2AF binding is modulated by exon enhancer signals in parallel with changes in splicing activity
-
Wang Z, Hoffmann HM, Grabowski PJ. 1995. Intrinsic U2AF binding is modulated by exon enhancer signals in parallel with changes in splicing activity. RNA 1:21-35.
-
(1995)
RNA
, vol.1
, pp. 21-35
-
-
Wang, Z.1
Hoffmann, H.M.2
Grabowski, P.J.3
-
69
-
-
10944256767
-
Systematic identification and analysis of exonic splicing silencers
-
Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB. 2004. Systematic identification and analysis of exonic splicing silencers. Cell 119:831-845.
-
(2004)
Cell
, vol.119
, pp. 831-845
-
-
Wang, Z.1
Rolish, M.E.2
Yeo, G.3
Tung, V.4
Mawson, M.5
Burge, C.B.6
-
70
-
-
24944433166
-
Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes
-
Wang J, Smith PJ, Krainer AR, Zhang MQ. 2005. Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes. Nucleic Acids Res 33:5053-5062.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5053-5062
-
-
Wang, J.1
Smith, P.J.2
Krainer, A.R.3
Zhang, M.Q.4
-
71
-
-
0027137934
-
Specific interactions between proteins implicated in splice site selection and regulated alternative splicing
-
Wu JY, Maniatis T. 1993. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing. Cell 75:1061-1070.
-
(1993)
Cell
, vol.75
, pp. 1061-1070
-
-
Wu, J.Y.1
Maniatis, T.2
-
72
-
-
0037057509
-
E-cadherin gene variants in gastric cancer families whose probands are diagnosed with diffuse gastric cancer
-
Yabuta T, Shinmura K, Tani M, Yamaguchi S, Yoshimura K, Katai H, Nakajima T, Mochiki E, Tsujinaka T, Takami M, Hirose K, Yamaguchi A, Takenoshita S, Yokota J. 2002. E-cadherin gene variants in gastric cancer families whose probands are diagnosed with diffuse gastric cancer. Int J Cancer 101:434-441.
-
(2002)
Int J Cancer
, vol.101
, pp. 434-441
-
-
Yabuta, T.1
Shinmura, K.2
Tani, M.3
Yamaguchi, S.4
Yoshimura, K.5
Katai, H.6
Nakajima, T.7
Mochiki, E.8
Tsujinaka, T.9
Takami, M.10
Hirose, K.11
Yamaguchi, A.12
Takenoshita, S.13
Yokota, J.14
-
73
-
-
2442441507
-
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
-
Yeo G, Burge CB. 2004. Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. J Comput Biol 11:377-394.
-
(2004)
J Comput Biol
, vol.11
, pp. 377-394
-
-
Yeo, G.1
Burge, C.B.2
-
74
-
-
1642372088
-
SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing
-
Zahler AM, Damgaard CK, Kjems J, Capuri M. 2004. SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing. J Biol Chem 279:10077-10084.
-
(2004)
J Biol Chem
, vol.279
, pp. 10077-10084
-
-
Zahler, A.M.1
Damgaard, C.K.2
Kjems, J.3
Capuri, M.4
-
75
-
-
0035691667
-
Exon identity established through differential antagonism between exonic splicing silencer-hound hnRNP A1 and enhancer-hound SR proteins
-
Zhu J, Mayeda A, Krainer AR. 2001. Exon identity established through differential antagonism between exonic splicing silencer-hound hnRNP A1 and enhancer-hound SR proteins. Mol Cell 8:1351-1361.
-
(2001)
Mol Cell
, vol.8
, pp. 1351-1361
-
-
Zhu, J.1
Mayeda, A.2
Krainer, A.R.3
-
76
-
-
0029665533
-
The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing
-
Zuo P, Maniatis T. 1996. The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing. Genes Dev 10:1356-1368.
-
(1996)
Genes Dev
, vol.10
, pp. 1356-1368
-
-
Zuo, P.1
Maniatis, T.2
|