-
1
-
-
1642274684
-
The PAS fold: A redefinition of the PAS domain based upon structural prediction
-
M. H. Hefti K. J. Francoijs S. C. de Vries R. Dixon J. Vervoort The PAS fold: A redefinition of the PAS domain based upon structural prediction FEBS J. 2004 271 1198-1208.
-
(2004)
FEBS J.
, vol.271
, pp. 1198-1208
-
-
Hefti, M.H.1
Francoijs, K.J.2
de Vries, S.C.3
Dixon, R.4
Vervoort, J.5
-
2
-
-
0034980776
-
The phototropin family of photoreceptors
-
W. R. Briggs C. F. Beck A. R. Cashmore J. M. Christie J. Hughes J. A. Jarillo T. Kagawa H. Kanegae E. Liscum A. Nagatani K. Okada M. Salomon W. Rüdiger T. Sakai M. Takano M. Wada J. C. Watson The phototropin family of photoreceptors Plant Cell 2001 13 993-997.
-
(2001)
Plant Cell
, vol.13
, pp. 993-997
-
-
Briggs, W.R.1
Beck, C.F.2
Cashmore, A.R.3
Christie, J.M.4
Hughes, J.5
Jarillo, J.A.6
Kagawa, T.7
Kanegae, H.8
Liscum, E.9
Nagatani, A.10
Okada, K.11
Salomon, M.12
Rüdiger, W.13
Sakai, T.14
Takano, M.15
Wada, M.16
Watson, J.C.17
-
3
-
-
0036583102
-
Phototropins 1 and 2: Versatile plant blue-light receptors
-
W. R. Briggs J. M. Christie Phototropins 1 and 2: versatile plant blue-light receptors Trends Plant Sci. 2002 7 204-210.
-
(2002)
Trends Plant Sci.
, vol.7
, pp. 204-210
-
-
Briggs, W.R.1
Christie, J.M.2
-
4
-
-
14944349780
-
Plant blue-light receptors
-
R. Banerjee A. Batschauer Plant blue-light receptors Planta 2005 220 498-502.
-
(2005)
Planta
, vol.220
, pp. 498-502
-
-
Banerjee, R.1
Batschauer, A.2
-
6
-
-
14744270377
-
Autophosphorylation, electrophoretic mobility and immunoreaction of oat Phototropin 1 Under UV and Blue Light
-
E. Knieb M. Salomon W. Rüdiger Autophosphorylation, electrophoretic mobility and immunoreaction of oat Phototropin 1 Under UV and Blue Light Photochem. Photobiol. 2005 81 177-182.
-
(2005)
Photochem. Photobiol.
, vol.81
, pp. 177-182
-
-
Knieb, E.1
Salomon, M.2
Rüdiger, W.3
-
7
-
-
0034622586
-
Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor phototropin
-
M. Salomon J. M. Christie E. Knieb U. Lempert W. R. Briggs Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor phototropin Biochemistry 2000 39 9401-9410.
-
(2000)
Biochemistry
, vol.39
, pp. 9401-9410
-
-
Salomon, M.1
Christie, J.M.2
Knieb, E.3
Lempert, U.4
Briggs, W.R.5
-
8
-
-
0035940398
-
An optomechanical transducer in the blue light receptor phototropin from Avena sativa
-
M. Salomon W. Eisenreich H. Dürr E. Scleicher E. Knieb V. Massey W. Rüdiger F. Müller A. Bacher G. Richter An optomechanical transducer in the blue light receptor phototropin from Avena sativa Proc. Natl. Acad. Sci. U. S. A. 2001 98 12357-12361.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 12357-12361
-
-
Salomon, M.1
Eisenreich, W.2
Dürr, H.3
Scleicher, E.4
Knieb, E.5
Massey, V.6
Rüdiger, W.7
Müller, F.8
Bacher, A.9
Richter, G.10
-
9
-
-
0035983657
-
Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii
-
M. Kasahara T. E. Swartz M. A. Olney A. Onodera N. Mochizuki H. Fukuzawa E. Asamizu S. Tabata H. Kanegae M. Takano J. M. Christie A. Nagatani W. R. Briggs Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii Plant Physiol. 2002 129 762-773.
-
(2002)
Plant Physiol.
, vol.129
, pp. 762-773
-
-
Kasahara, M.1
Swartz, T.E.2
Olney, M.A.3
Onodera, A.4
Mochizuki, N.5
Fukuzawa, H.6
Asamizu, E.7
Tabata, S.8
Kanegae, H.9
Takano, M.10
Christie, J.M.11
Nagatani, A.12
Briggs, W.R.13
-
10
-
-
0036016438
-
Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch
-
S. Crosson K. Moffat Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch Plant Cell 2002 14 1067-1075.
-
(2002)
Plant Cell
, vol.14
, pp. 1067-1075
-
-
Crosson, S.1
Moffat, K.2
-
11
-
-
0037501350
-
Blue light perception in plants. Detection and characterization of a light-induced neutral flavin radical in a C450A mutant of phototropin
-
C. W. M. Kay E. Schleicher A. Kuppig H. Hofner W. Rüdiger M. Schleicher M. Fischer A. Bacher S. Weber G. Richter Blue light perception in plants. Detection and characterization of a light-induced neutral flavin radical in a C450A mutant of phototropin J. Biol. Chem. 2003 278 10973-10982.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 10973-10982
-
-
Kay, C.W.M.1
Schleicher, E.2
Kuppig, A.3
Hofner, H.4
Rüdiger, W.5
Schleicher, M.6
Fischer, M.7
Bacher, A.8
Weber, S.9
Richter, G.10
-
12
-
-
0345268673
-
Primary Reactions of the LOV2 Domain of Phototropin, a Plant Blue-Light Photoreceptor
-
J. T. M. Kennis S. Crosson M. Gauden I. H. M. van Stokkum K. Moffat R. van Grondelle Primary Reactions of the LOV2 Domain of Phototropin, a Plant Blue-Light Photoreceptor Biochemistry 2003 42 3385-3392.
-
(2003)
Biochemistry
, vol.42
, pp. 3385-3392
-
-
Kennis, J.T.M.1
Crosson, S.2
Gauden, M.3
van Stokkum, I.H.M.4
Moffat, K.5
van Grondelle, R.6
-
14
-
-
0037306223
-
Phot-LOV1: Photocycle of a Blue-Light Receptor Domain from the Green Alga Chlamydomonas reinhardtii
-
T. Kottke J. Heberle Dominic Hehn P. Hegemann Phot-LOV1: Photocycle of a Blue-Light Receptor Domain from the Green Alga Chlamydomonas reinhardtii Biophys. J. 2003 84 1192-1201.
-
(2003)
Biophys. J.
, vol.84
, pp. 1192-1201
-
-
Kottke, T.1
Heberle Dominic Hehn, J.2
Hegemann, P.3
-
15
-
-
24944553332
-
Blue light-regulated molecular switch of Ser/Thr kinase in phototropin
-
D. Matsuoka S. Tokutomi Blue light-regulated molecular switch of Ser/Thr kinase in phototropin Proc. Natl. Acad. Sci. U. S. A. 2005 102 13337-13342.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 13337-13342
-
-
Matsuoka, D.1
Tokutomi, S.2
-
16
-
-
0036776294
-
Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function
-
J. M. Christie T. E. Swartz R. A. Bogomolni W. R. Briggs Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function Plant J. 2002 32 205-219.
-
(2002)
Plant J.
, vol.32
, pp. 205-219
-
-
Christie, J.M.1
Swartz, T.E.2
Bogomolni, R.A.3
Briggs, W.R.4
-
17
-
-
0037435618
-
The LOV domain family: Photoresponsive signaling modules coupled to diverse output domains
-
S. Crosson S. Rajagopal K. Moffat The LOV domain family: photoresponsive signaling modules coupled to diverse output domains Biochemistry 2003 42 2-10.
-
(2003)
Biochemistry
, vol.42
, pp. 2-10
-
-
Crosson, S.1
Rajagopal, S.2
Moffat, K.3
-
18
-
-
3242747589
-
The bacterial counterparts of plants phototropins
-
A. Losi The bacterial counterparts of plants phototropins Photochem. Photobiol. Sci. 2004 3 566-574.
-
(2004)
Photochem. Photobiol. Sci.
, vol.3
, pp. 566-574
-
-
Losi, A.1
-
19
-
-
0036224807
-
First evidence for phototropin-related blue-light receptors in prokaryotes
-
A. Losi E. Polverini B. Quest W. Gärtner First evidence for phototropin-related blue-light receptors in prokaryotes Biophys. J. 2002 82 2627-2634.
-
(2002)
Biophys. J.
, vol.82
, pp. 2627-2634
-
-
Losi, A.1
Polverini, E.2
Quest, B.3
Gärtner, W.4
-
20
-
-
19944390971
-
Initial characterization of a blue-light sensing, phototropin-related protein from Pseudomonas putida: A paradigm for an extended LOV construct
-
U. Krauss A. Losi W. Gärtner K.-E. Jaeger T. Eggert Initial characterization of a blue-light sensing, phototropin-related protein from Pseudomonas putida: a paradigm for an extended LOV construct Phys. Chem. Chem. Phys. 2005 7 2229-2236.
-
(2005)
Phys. Chem. Chem. Phys.
, vol.7
, pp. 2229-2236
-
-
Krauss, U.1
Losi, A.2
Gärtner, W.3
Jaeger, K.-E.4
Eggert, T.5
-
21
-
-
3242878844
-
On the reaction mechanism of adduct formation in LOV domains of the plant blue-light receptor phototropin
-
E. Schleicher R. M. Kowalczyk C. W. M. Kay P. Hegemann A. Bacher M. Fischer R. Bittl G. Richter S. Weber On the reaction mechanism of adduct formation in LOV domains of the plant blue-light receptor phototropin J. Am. Chem. Soc. 2004 126 11067-11076.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 11067-11076
-
-
Schleicher, E.1
Kowalczyk, R.M.2
Kay, C.W.M.3
Hegemann, P.4
Bacher, A.5
Fischer, M.6
Bittl, R.7
Richter, G.8
Weber, S.9
-
22
-
-
0035853139
-
Structure of a flavin-binding plant photoreceptor domain: Insights into light-mediated signal transduction
-
S. Crosson K. Moffat Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction Proc. Natl. Acad. Sci. U. S. A. 2001 98 2995-3000.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 2995-3000
-
-
Crosson, S.1
Moffat, K.2
-
23
-
-
0037380836
-
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii
-
R. Fedorov I. Schlichting E. Hartmann T. Domratcheva M. Fuhrmann P. Hegemann Crystal structures and molecular mechanism of a light-induced signaling switch: the Phot-LOV1 domain from Chlamydomonas reinhardtii Biophys. J. 2003 84 2492-2501.
-
(2003)
Biophys. J.
, vol.84
, pp. 2492-2501
-
-
Fedorov, R.1
Schlichting, I.2
Hartmann, E.3
Domratcheva, T.4
Fuhrmann, M.5
Hegemann, P.6
-
24
-
-
0141707094
-
Structural basis of a phototropin light switch
-
S. M. Harper L. C. Neil K. H. Gardner Structural basis of a phototropin light switch Science 2003 301 1541-1544.
-
(2003)
Science
, vol.301
, pp. 1541-1544
-
-
Harper, S.M.1
Neil, L.C.2
Gardner, K.H.3
-
25
-
-
11144344967
-
Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity
-
S. M. Harper J. M. Christie K. H. Gardner Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity Biochemistry 2004 43 16184-16192.
-
(2004)
Biochemistry
, vol.43
, pp. 16184-16192
-
-
Harper, S.M.1
Christie, J.M.2
Gardner, K.H.3
-
26
-
-
33745334847
-
-
D.-P. Häder and G. Jori, Elsevier, Amsterdam, 4th edn, ch. 10
-
A. Losi, in Flavin photochemistry and photobiology, ed. D.-P. Häder and G. Jori, Elsevier, Amsterdam, 4th edn, 2006, ch. 10, pp. 223–276.
-
(2006)
Flavin Photochemistry and Photobiology
, pp. 223-276
-
-
Losi, A.1
-
27
-
-
25444492902
-
Conformational dynamics of phototropin 2 LOV2 domain with the linker upon photoexcitation
-
T. Eitoku Y. Nakasone D. Matsuoka S. Tokutomi M. Terazima Conformational dynamics of phototropin 2 LOV2 domain with the linker upon photoexcitation J. Am. Chem. Soc. 2005 127 13238-13244.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 13238-13244
-
-
Eitoku, T.1
Nakasone, Y.2
Matsuoka, D.3
Tokutomi, S.4
Terazima, M.5
-
28
-
-
0032990441
-
PAS domains: Internal sensors of oxygen, redox potential and light
-
B. L. Taylor I. B. Zhulin PAS domains: internal sensors of oxygen, redox potential and light Microbiol. Mol. Biol. Rev. 1999 63 479-506.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
29
-
-
10444268892
-
Heme-based sensors: Defining characteristics, recent developments, and regulatory hypotheses
-
M. A. Gilles-Gonzalez G. Gonzalez Heme-based sensors: defining characteristics, recent developments, and regulatory hypotheses J. Inorg. Biochem. 2005 99 1-22.
-
(2005)
J. Inorg. Biochem.
, vol.99
, pp. 1-22
-
-
Gilles-Gonzalez, M.A.1
Gonzalez, G.2
-
30
-
-
4143081643
-
Dimerization of the plant photoreceptor phototropin is probably mediated by the LOV1 domain
-
M. Salomon U. Lempert W. Rüdiger Dimerization of the plant photoreceptor phototropin is probably mediated by the LOV1 domain FEBS Lett. 2004 572 8-10.
-
(2004)
FEBS Lett.
, vol.572
, pp. 8-10
-
-
Salomon, M.1
Lempert, U.2
Rüdiger, W.3
-
31
-
-
33745686031
-
Kinetic Measurement of Transient Dimerization and Dissociation Reactions of Arabidopsis Phototropin 1 LOV2 Domain
-
Y. Nakasone T. Eitoku D. Matsuoka S. Tokutomi M. Terazima Kinetic Measurement of Transient Dimerization and Dissociation Reactions of Arabidopsis Phototropin 1 LOV2 Domain Biophys. J. 2006 91 645-653.
-
(2006)
Biophys. J.
, vol.91
, pp. 645-653
-
-
Nakasone, Y.1
Eitoku, T.2
Matsuoka, D.3
Tokutomi, S.4
Terazima, M.5
-
32
-
-
13844261202
-
Quaternary structure of LOV-domain containing polypeptide of Arabidopsis FKF1 protein
-
M. Nakasako D. Matsuoka K. Zikihara S. Tokutomi Quaternary structure of LOV-domain containing polypeptide of Arabidopsis FKF1 protein FEBS Lett. 2005 579 1067-1071.
-
(2005)
FEBS Lett.
, vol.579
, pp. 1067-1071
-
-
Nakasako, M.1
Matsuoka, D.2
Zikihara, K.3
Tokutomi, S.4
-
33
-
-
9744263917
-
Light-Induced Structural Changes of LOV Domain-Containing Polypeptides from Arabidopsis Phototropin 1 and 2 Studied by Small-Angle X-ray Scattering
-
M. Nakasako T. Iwata D. Matsuoka S. Tokutomi Light-Induced Structural Changes of LOV Domain-Containing Polypeptides from Arabidopsis Phototropin 1 and 2 Studied by Small-Angle X-ray Scattering Biochemistry 2004 43 14881-1489.
-
(2004)
Biochemistry
, vol.43
, pp. 14881-21489
-
-
Nakasako, M.1
Iwata, T.2
Matsuoka, D.3
Tokutomi, S.4
-
34
-
-
0031880316
-
Roles in dimerization and blue light photoresponse of the PAS and LOV domains of Neurospora crassa white collar proteins
-
P. Ballario C. Talora D. Galli H. Linden G. Macino Roles in dimerization and blue light photoresponse of the PAS and LOV domains of Neurospora crassa white collar proteins Mol. Microbiol. 1998 29 719-729.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 719-729
-
-
Ballario, P.1
Talora, C.2
Galli, D.3
Linden, H.4
Macino, G.5
-
35
-
-
0033953284
-
The STAS domain a link between anion transporters and antisigma-factor antagonists
-
L. Aravind E. V. Koonin The STAS domain a link between anion transporters and antisigma-factor antagonists Curr. Biol. 2000 10 R53-R55.
-
(2000)
Curr. Biol.
, vol.10
, pp. R53-R55
-
-
Aravind, L.1
Koonin, E.V.2
-
36
-
-
0035141969
-
New family of regulators in the environmental signaling pathway which activates the general stress transcription factor of Bacillus subtilis
-
S. Akbar T. A. Gaidenko K. Min M. O’Reilly K. M. Devine C. W. Price New family of regulators in the environmental signaling pathway which activates the general stress transcription factor of Bacillus subtilis J. Bacteriol. 2001 183 1329-1338.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1329-1338
-
-
Akbar, S.1
Gaidenko, T.A.2
Min, K.3
O’Reilly, M.4
Devine, K.M.5
Price, C.W.6
-
37
-
-
33749014144
-
The blue-light receptor YtvA acts in the environmental stress signaling pathway of Bacillus subtilis
-
T. A. Gaidenko T. J. Kim A. L. Weigel M. S. Brody C. W. Price The blue-light receptor YtvA acts in the environmental stress signaling pathway of Bacillus subtilis J. Bacteriol. 2006 188 6387-6395.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 6387-6395
-
-
Gaidenko, T.A.1
Kim, T.J.2
Weigel, A.L.3
Brody, M.S.4
Price, C.W.5
-
38
-
-
33749021097
-
Blue light activates the sigmaB-dependent stress response of Bacillus subtilisvia YtvA
-
M. Avila-Perez K. J. Hellingwerf R. Kort Blue light activates the sigmaB-dependent stress response of Bacillus subtilisvia YtvA J. Bacteriol. 2006 188 6411-6414.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 6411-6414
-
-
Avila-Perez, M.1
Hellingwerf, K.J.2
Kort, R.3
-
39
-
-
33745404577
-
Blue news: NTP binding properties of the blue-light sensitive YtvA protein from Bacillus subtilis
-
V. Buttani A. Losi E. Polverini W. Gärtner Blue news: NTP binding properties of the blue-light sensitive YtvA protein from Bacillus subtilis FEBS Lett. 2006 580 3818-3822.
-
(2006)
FEBS Lett.
, vol.580
, pp. 3818-3822
-
-
Buttani, V.1
Losi, A.2
Polverini, E.3
Gärtner, W.4
-
40
-
-
0029904582
-
The SpoIIAA protein of Bacillus subtilis has GTP-binding properties
-
S. M. Najafi D. A. Harris M. D. Yudkin The SpoIIAA protein of Bacillus subtilis has GTP-binding properties J. Bacteriol. 1996 178 6632-6634.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6632-6634
-
-
Najafi, S.M.1
Harris, D.A.2
Yudkin, M.D.3
-
41
-
-
27544498857
-
Mutational effects on protein structural changes and interdomain interactions in the blue-light sensing LOV protein YtvA
-
A. Losi E. Ghiraldelli S. Jansen W. Gärtner Mutational effects on protein structural changes and interdomain interactions in the blue-light sensing LOV protein YtvA Photochem. Photobiol. 2005 81 1145-1152.
-
(2005)
Photochem. Photobiol.
, vol.81
, pp. 1145-1152
-
-
Losi, A.1
Ghiraldelli, E.2
Jansen, S.3
Gärtner, W.4
-
42
-
-
1142304289
-
Listening to the blue: The time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain
-
A. Losi B. Quest W. Gärtner Listening to the blue: the time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain Photochem. Photobiol. Sci. 2003 2 759-766.
-
(2003)
Photochem. Photobiol. Sci.
, vol.2
, pp. 759-766
-
-
Losi, A.1
Quest, B.2
Gärtner, W.3
-
43
-
-
0025861478
-
Convex constraint analysis: A natural deconvolution of circular dichroism curves of proteins
-
A. Perczel M. Hollosi G. Tusnady G. D. Fasman Convex constraint analysis: a natural deconvolution of circular dichroism curves of proteins Protein Eng. 1991 4 669-679.
-
(1991)
Protein Eng.
, vol.4
, pp. 669-679
-
-
Perczel, A.1
Hollosi, M.2
Tusnady, G.3
Fasman, G.D.4
-
44
-
-
0026696116
-
Analysis of the circular dichroism spectrum of proteins using the convex constraint algorithm: A practical guide
-
A. Perczel K. Park G. D. Fasman Analysis of the circular dichroism spectrum of proteins using the convex constraint algorithm: A practical guide Anal. Biochem. 1992 203 83-93.
-
(1992)
Anal. Biochem.
, vol.203
, pp. 83-93
-
-
Perczel, A.1
Park, K.2
Fasman, G.D.3
-
45
-
-
0033777694
-
Characterization of a Recombinant Murine 18.5-kDa Myelin Basic Protein
-
I. R. Bates P. Matharu N. Ishiyama D. Rochon D. D. Wood E. Polverini M. A. Moscarello N. J. Viner G. Harauz Characterization of a Recombinant Murine 18.5-kDa Myelin Basic Protein Protein Expression Purif. 2000 20 285-299.
-
(2000)
Protein Expression Purif.
, vol.20
, pp. 285-299
-
-
Bates, I.R.1
Matharu, P.2
Ishiyama, N.3
Rochon, D.4
Wood, D.D.5
Polverini, E.6
Moscarello, M.A.7
Viner, N.J.8
Harauz, G.9
-
47
-
-
0345832301
-
ClusPro: An automated docking and discrimination method for the prediction of protein complexes
-
S. R. Comeau D. W. Gatchell S. Vajda C. J. Camacho ClusPro: An automated docking and discrimination method for the prediction of protein complexes Bioinformatics 2004 20 45-50.
-
(2004)
Bioinformatics
, vol.20
, pp. 45-50
-
-
Comeau, S.R.1
Gatchell, D.W.2
Vajda, S.3
Camacho, C.J.4
-
48
-
-
0035040480
-
Protein docking using continuum electrostatics and geometric fit
-
J. G. Mandell V. A. Roberts M. E. Pique V. Kotlovyi J. C. Mitchell E. Nelson I. Tsigelny L. F. Ten Eyck Protein docking using continuum electrostatics and geometric fit Protein Eng. 2001 14 105-113.
-
(2001)
Protein Eng.
, vol.14
, pp. 105-113
-
-
Mandell, J.G.1
Roberts, V.A.2
Pique, M.E.3
Kotlovyi, V.4
Mitchell, J.C.5
Nelson, E.6
Tsigelny, I.7
Ten Eyck, L.F.8
-
49
-
-
0038526303
-
ZDOCK: An initial-stage protein-docking algorithm
-
R. Chen L. Li Z. Weng ZDOCK: an initial-stage protein-docking algorithm Proteins 2003 52 80-87.
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
53
-
-
0027180507
-
Verification of protein structures: Patterns of nonbonded atomic interactions
-
C. Colovos T. O. Yeates Verification of protein structures: patterns of nonbonded atomic interactions Protein Sci. 1993 2 1511-1519.
-
(1993)
Protein Sci.
, vol.2
, pp. 1511-1519
-
-
Colovos, C.1
Yeates, T.O.2
-
54
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
R. Luthy J. U. Bowie D. Eisenberg Assessment of protein models with three-dimensional profiles Nature 1992 356 83-85.
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
55
-
-
0030598343
-
Deviations from standard atomic volumes as a quality measure for protein crystal structures
-
J. Pontius J. Richelle S. J. Wodak Deviations from standard atomic volumes as a quality measure for protein crystal structures J. Mol. Biol. 1996 264 121-136.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 121-136
-
-
Pontius, J.1
Richelle, J.2
Wodak, S.J.3
-
56
-
-
17444372787
-
Improved prediction of protein-protein binding sites using a support vector machines approach
-
J. R. Bradford D. R. Westhead Improved prediction of protein-protein binding sites using a support vector machines approach Bioinformatics 2005 21 1487-1494.
-
(2005)
Bioinformatics
, vol.21
, pp. 1487-1494
-
-
Bradford, J.R.1
Westhead, D.R.2
-
57
-
-
3242879771
-
Computational alanine scanning of protein–protein interfaces
-
T. Kortemme D. E. Kim D. Baker Computational alanine scanning of protein–protein interfaces Sci. STKE 2004 2004 219 pls2.
-
(2004)
Sci. STKE
, vol.2004
, Issue.219
, pp. pls2
-
-
Kortemme, T.1
Kim, D.E.2
Baker, D.3
-
58
-
-
0034672122
-
Estimation of protein secondary structure from circular dichroism spectra: Inclusion of denatured proteins with native proteins in the analysis
-
N. Sreerama S. Y. Venyaminov R. W. Woody Estimation of protein secondary structure from circular dichroism spectra: inclusion of denatured proteins with native proteins in the analysis Anal. Biochem. 2000 287 243-251.
-
(2000)
Anal. Biochem.
, vol.287
, pp. 243-251
-
-
Sreerama, N.1
Venyaminov, S.Y.2
Woody, R.W.3
-
59
-
-
0033042935
-
Estimation of the number of alpha-helical and beta-strand segments in proteins using circular dichroism spectroscopy
-
N. Sreerama S. Y. Venyaminov R. W. Woody Estimation of the number of alpha-helical and beta-strand segments in proteins using circular dichroism spectroscopy Protein Sci. 1999 8 370-380.
-
(1999)
Protein Sci.
, vol.8
, pp. 370-380
-
-
Sreerama, N.1
Venyaminov, S.Y.2
Woody, R.W.3
-
60
-
-
23344444462
-
Improved Estimation of the Secondary Structures of Proteins by Vacuum-Ultraviolet Circular Dichroism Spectroscopy
-
K. Matsuo R. Yonehara K. Gekko Improved Estimation of the Secondary Structures of Proteins by Vacuum-Ultraviolet Circular Dichroism Spectroscopy J. Biochem. 2005 138 79-88.
-
(2005)
J. Biochem.
, vol.138
, pp. 79-88
-
-
Matsuo, K.1
Yonehara, R.2
Gekko, K.3
-
61
-
-
0037302324
-
Structural composition of betaI- and betaII-proteins
-
N. Sreerama R. W. Woody Structural composition of betaI- and betaII-proteins Protein Sci. 2003 12 384-388.
-
(2003)
Protein Sci.
, vol.12
, pp. 384-388
-
-
Sreerama, N.1
Woody, R.W.2
-
62
-
-
1642486696
-
Analysis of circular dichroism data
-
N. J. Greenfield Analysis of circular dichroism data Methods Enzymol. 2004 383 282-317.
-
(2004)
Methods Enzymol.
, vol.383
, pp. 282-317
-
-
Greenfield, N.J.1
-
63
-
-
0037058903
-
Recent developments in the electronic spectroscopy of amides and alpha-helical polypeptides
-
R. W. Woody A. Koslowski Recent developments in the electronic spectroscopy of amides and alpha-helical polypeptides Biophys. Chem. 2002 101–102 535-551.
-
(2002)
Biophys. Chem.
, vol.101-102
, pp. 535-551
-
-
Woody, R.W.1
Koslowski, A.2
-
64
-
-
0030042763
-
Methods to estimate the conformation of proteins and polypeptides from circular dichroism data
-
N. J. Greenfield Methods to estimate the conformation of proteins and polypeptides from circular dichroism data Anal. Biochem. 1996 235 1-10.
-
(1996)
Anal. Biochem.
, vol.235
, pp. 1-10
-
-
Greenfield, N.J.1
-
65
-
-
0018118041
-
Circular dichroic analysis of protein conformation: Inclusion of the beta-turns
-
C. T. Chang C. S. Wu J. T. Yang Circular dichroic analysis of protein conformation: inclusion of the beta-turns Anal. Biochem. 1978 91 13-31.
-
(1978)
Anal. Biochem.
, vol.91
, pp. 13-31
-
-
Chang, C.T.1
Wu, C.S.2
Yang, J.T.3
-
66
-
-
18844391283
-
Comparative investigation of the LOV1 and LOV2 domains in Adiantum Phytochrome3
-
T. Iwata D. Nozaki S. Tokutomi H. Kandori Comparative investigation of the LOV1 and LOV2 domains in Adiantum Phytochrome3 Biochemistry 2005 44 7427-7434.
-
(2005)
Biochemistry
, vol.44
, pp. 7427-7434
-
-
Iwata, T.1
Nozaki, D.2
Tokutomi, S.3
Kandori, H.4
-
67
-
-
0037428497
-
Intramolecular proton transfers and structural changes during the photocycle of the LOV2 domain of phototropin 1
-
S. B. Corchnoy T. E. Swartz J. W. Lewis I. Szundi W. R. Briggs R. A. Bogomolni Intramolecular proton transfers and structural changes during the photocycle of the LOV2 domain of phototropin 1 J. Biol. Chem. 2003 278 724-731.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 724-731
-
-
Corchnoy, S.B.1
Swartz, T.E.2
Lewis, J.W.3
Szundi, I.4
Briggs, W.R.5
Bogomolni, R.A.6
-
69
-
-
26244466162
-
Structural Basis of ARNT PAS-B dimerization: Use of a common beta-sheet interface for hetero- and homodimerization
-
P. B. Card P. J. A. Erbel K. H. Gardner Structural Basis of ARNT PAS-B dimerization: use of a common beta-sheet interface for hetero- and homodimerization J. Mol. Biol. 2005 353 664-677.
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 664-677
-
-
Card, P.B.1
Erbel, P.J.A.2
Gardner, K.H.3
-
70
-
-
1542327658
-
Insights into signal transduction involving PAS domain oxygen-sensing heme proteins from the X-ray crystal structure of Escherichia Coli Dos Heme Domain (EcDosH)
-
H. J. Park C. Suquet J. D. Satterlee C. Kang Insights into signal transduction involving PAS domain oxygen-sensing heme proteins from the X-ray crystal structure of Escherichia Coli Dos Heme Domain (EcDosH) Biochemistry 2004 43 2738-2746.
-
(2004)
Biochemistry
, vol.43
, pp. 2738-2746
-
-
Park, H.J.1
Suquet, C.2
Satterlee, J.D.3
Kang, C.4
-
71
-
-
0034636982
-
Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: Crystallographic, mutagenesis and resonance Raman spectroscopic studies
-
H. Miyatake M. Mukai S. Y. Park S. Adachi K. Tamura H. Nakamura K. Nakamura T. Tsuchiya T. Iizuka Y. Shiro Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies J. Mol. Biol. 2000 301 415-431.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 415-431
-
-
Miyatake, H.1
Mukai, M.2
Park, S.Y.3
Adachi, S.4
Tamura, K.5
Nakamura, H.6
Nakamura, K.7
Tsuchiya, T.8
Iizuka, T.9
Shiro, Y.10
|