Kinetic measurement of transient dimerization and dissociation reactions of Arabidopsis phototropin 1 LOV2 domain

Biophysical Journal

Volumn 91, Issue 2, 2006, Pages 645-653

  Nakasone, Yusuke ^a   Eitoku, Takeshi ^a   Matsuoka, Daisuke ^b   Tokutomi, Satoru ^b   Terazima, Masahide ^a  

^a KYOTO UNIVERSITY   (Japan)

^b Osaka Prefecture University   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; PHOTOTROPIN 1; UNCLASSIFIED DRUG;

ARTICLE; DIFFUSION COEFFICIENT; DIMERIZATION; DISSOCIATION CONSTANT; PHOTOREACTIVITY;

ARABIDOPSIS;

EID: 33745686031     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.084772     Document Type: Article

References (40)

1. Beens, H., and A. Weller. 1975. Organic Molecular Photophysics. J. B. Birks, editor. John Wiley & Sons. London.
2. Celaya, R. B., and E. Liscum. 2005. Phototropins and associated signaling: providing the power of movement in higher plants. Photochem. Photobiol. 81:73-80.
3. Huala, E., P. W. Oeller, E. Liscum, I. S. Han, E. Larsen, and W. R. Briggs. 1997. Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain. Science. 278:2120-2123.
4. Christie, J. M., P. Reymond, G. K. Powell, P. Bernasconi, A. A. Raibekas, E. Liscum, and W. R. Briggs. 1998. Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism. Science. 282:1698-1701.
5. Christie, J. M., M. Salomon, K. Nozue, M. Wada, and W. R. Briggs. 1999. LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide. Proc. Natl. Acad. Sci. USA. 96:8779-8783.
6. Briggs, W. R., and J. M. Christie. 2002. Phototropins 1 and 2: versatile plant blue-light receptors. Trends Plant Sci. 7:204-210.
7. Matsuoka, D., and S. Tokutomi. 2005. Blue light-regulated molecular switch of Ser/Thr kinase in phototropin. Proc. Natl. Acad. Sci. USA. 102:13337-13342.
8. Kottke, T., J. Heberle, D. Hehn, B. Dick, and P. Hegemann. 2003. Phot LOV1: photocycle of a blue-light receptor domain from the green alga Chlamydomonas reinhardtii. Biophys. J. 84:1192-1201.
9. Schüttrigkeit, T. A., C. K. Kompa, M. Salomon, W. Rüdiger, and M. E. Michel-Beyerle. 2003. Primary photophysics of the FMN binding LOV2 domain of the plant blue light receptor phototropin of Avena sativa. Chem. Phys. 294:501-508.
10. Kennis, J. T. M., S. Crosson, M. Gauden, I. H. M. van Stokkum, K. Moffat, and R. van Grondelle. 2003. Primary reactions of the LOV2 domain of phototropin, a plant blue-light photoreceptor. Biochemistry. 42:3385-3392.
11. Schleicher, E., R. M. Kowalczyk, C. W. M. Kay, P. Hegemann, A. Bacher, M. Fischer, R. Bittl, G. Richter, and S. Weber. 2004. On the reaction mechanism of adduct formation in LOV domains of the plant blue-light receptor phototropin. J. Am. Chem. Soc. 126:11067-11076.
12. Salomon, M., J. M. Christie, E. Knieb, U. Lempert, and W. R. Briggs. 2000. Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor phototropin. Biochemistry. 39:9401-9410.
13. Salomon, M., W. Eisenreich, H. Dürr, E. Schleicher, E. Knieb, V. Massey, W. Rüdiger, F. Müller, A. Bacher, and G. Richter. 2001. An optomechanical transducer in the blue light receptor phototropin from Avena sativa. Proc. Natl. Acad. Sci. USA. 98:12357-12361.
14. Kasahara, M., T. E. Swartz, M. A. Olney, A. Onodera, N. Mochizuki, H. Fukuzawa, E. Asamizu, S. Tabata, H. Kanegae, M. Takano, J. M. Christie, A. Nagatani, and W. R. Briggs. 2002. Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii. Plant Physiol. 129:762-773.
15. Crosson, S., and K. Moffat. 2001. Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction. Proc. Natl. Acad. Sci. USA. 98:2995-3000.
16. Crosson, S., and K. Moffat. 2002. Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch. Plant Cell. 14:1067-1075.
17. Swartz, T. E., P. J. Wenzel, S. B. Corchnoy, W. R. Briggs, and R. A. Bogomolni. 2002. Vibration spectroscopy reveals light-induced chromophore and protein structural changes in the LOV2 domain of the plant blue-light receptor phototropin 1. Biochemistry. 41:7183-7189.
18. Fedorov, R., I. Schlichting, E. Hartmann, T. Domratcheva, M. Fuhrmann, and P. Hegemann. 2003. Crystal structures and molecular mechanism of a light-induced signaling switch: the Phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys. J. 84:2492-2501.
19. Iwata, T., D. Nozaki, S. Tokutomi, and H. Kandori. 2005. Comparative investigation of the LOV1 and LOV2 domains in Adiantum phytochrome3. Biochemistry. 44:7427-7434.
20. Harper, S. M., L. C. Neil, and K. H. Gardner. 2003. Structural basis of a phototropin light switch. Science. 301:1541-1544.
21. Harper, S. M., J. Christie, and K. H. Gardner. 2004. Disruption of the LOV-J helix interaction activates phototropin kinase activity. Biochemistry. 43:16184-16192.
22. Nakasako, M., T. Iwata, D. Matsuoka, and S. Tokutomi. 2004. Light-induced structural changes of LOV domain-containing polypeptides from Arabidopsis phototropin 1 and 2 studied by small-angle x-ray scattering. Biochemistry. 43:14881-14890.
23. Eitoku, T., Y. Nakasone, D. Matsuoka, S. Tokutomi, and M. Terazima. 2005. Conformational dynamics of phototropin 2 LOV2 domain with the linker upon photoexcitation. J. Am. Chem. Soc. 127:13238-13244.
24. Terazima, M., and N. Hirota. 1993. Translational diffusion of a transient radical studied by the transient grating method, pyrazinyl radical in 2-propanol. J. Chem. Phys. 98:6257-6262.
25. Terazima, M., K. Okamoto, and N. Hirota. 1995. Translational diffusion of transient radicals created by the photoinduced hydrogen abstraction reaction in solution: anomalous size dependence in the radical diffusion. J. Chem. Phys. 102:2506-2512.
26. Terazima, M. 2000. Is the translational diffusion of organic radicals different from that of closed-shell molecules? Acc. Chem. Res. 33:687-694.
27. Nada, T., and M. Terazima. 2003. A novel method for study of protein folding kinetics by monitoring diffusion coefficient in time domain. Biophys. J. 85:1876-1881.
28. Nishida, S., T. Nada, and M. Terazima. 2004. Kinetics of intermolecular interaction during protein folding of reduced cytochrome c. Biophys. J. 87:2663-2675.
29. Terazima, M. 2006. Diffusion coefficients as a monitor of reaction kinetics of biological molecules. Phys. Chem. Chem. Phys. 8:545-557.
30. Swartz, T. E., S. B. Corchnoy, J. M. Christie, J. W. Lewis, I. Szundi, W. R. Briggs, and R. A. Bogomolni. 2001. The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin. J. Biol. Chem. 276:36493-36500.
31. Losi, A., and S. E. Braslavsky. 2003. The time-resolved thermodynamics of the chromophore-protein interactions in biological photosensors as derived from photothermal measurements. Phys. Chem. Chem. Phys. 5:2739-2750.
32. Losi, A., T. Kottke, and P. Hegemann. 2004. Recording of blue light-induced energy and volume changes within the wild-type and mutated phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys. J. 86:1051-1060.
33. Tyrrell, H. J. V., and K. R. Harris. 1984. Diffusion in Liquids. Butterworth, London.
34. Cussler, E. L. 1994. Diffusion. Cambridge University Press,. Cambridge, UK.
35. Riveros-Moreno, V., and J. B. Wittenberg. 1972. The self-diffusion coefficients of myoglobin and hemoglobin in concentrated solutions. J. Biol. Chem. 247:895-901.
36. Wilkins, D. K., S. B. Grimshaw, V. Receveur, C. M. Dobson, J. A. Jones, and L. J. Smith. 1999. Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques. Biochemistry. 38:16424-16431.
37. Bismuto, E., E. Gratton, and D. C. Lamb. 2001. Dynamics of ANS binding to tuna apomyoglobin measured with fluorescence correlation spectroscopy. Biophys. J. 81:3510-3521.
38. Smoluchowski, M. V. 1917. Versuch einer mathematischen Theorie der Koagulationskinetik kolloider Lösungen. Z. Phys. Chem. 92:129-168.
39. Atkins, P., and J. Paula. 2004. Atkins' Physical Chemistry. Oxford University Press, Oxford, UK.
40. Salomon, M., U. Lempert, and W. Rudiger. 2004. Dimerization of the plant photoreceptor phototropin is probably mediated by the LOV1 domain. FEBS Lett. 572:8-10.