메뉴 건너뛰기




Volumn 387, Issue 1-2, 2007, Pages 67-74

A systematic analysis of lineage-specific evolution in metabolic pathways

Author keywords

Mammals; Positive selection; Systems biology

Indexed keywords

ARACHIDONIC ACID; PYRIMIDINE;

EID: 33845653599     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.08.013     Document Type: Article
Times cited : (6)

References (29)
  • 1
    • 0031828113 scopus 로고    scopus 로고
    • Post genomic science: converting primary structure into physiological function
    • Benner S.A., Trabesinger N., and Schreiber D. Post genomic science: converting primary structure into physiological function. Adv. Enzyme Res. 38 (1998) 155-180
    • (1998) Adv. Enzyme Res. , vol.38 , pp. 155-180
    • Benner, S.A.1    Trabesinger, N.2    Schreiber, D.3
  • 2
    • 0034040754 scopus 로고    scopus 로고
    • Functional inferences from reconstructed evolutionary biology involving rectified databases - an evolutionarily grounded approach to functional genomics
    • Benner S.A., Chamberlin S.G., Liberles D.A., Govindarajan S., and Knecht L. Functional inferences from reconstructed evolutionary biology involving rectified databases - an evolutionarily grounded approach to functional genomics. Res. Microbiol. 151 (2000) 97-106
    • (2000) Res. Microbiol. , vol.151 , pp. 97-106
    • Benner, S.A.1    Chamberlin, S.G.2    Liberles, D.A.3    Govindarajan, S.4    Knecht, L.5
  • 4
    • 0346243805 scopus 로고    scopus 로고
    • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
    • Clark A.G., et al. Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science 301 (2003) 1960-1963
    • (2003) Science , vol.301 , pp. 1960-1963
    • Clark, A.G.1
  • 5
    • 0024444329 scopus 로고
    • Evolution of a biosynthetic pathway
    • Crawford I.P. Evolution of a biosynthetic pathway. Ann. Rev. Microbiol. 43 (1989) 567-600
    • (1989) Ann. Rev. Microbiol. , vol.43 , pp. 567-600
    • Crawford, I.P.1
  • 6
    • 0033215210 scopus 로고    scopus 로고
    • Pathway alignment: application of comparative analysis of glycolytic enzymes
    • Dandekar T., Schuster S., Snel B., Huynen M., and Bork P. Pathway alignment: application of comparative analysis of glycolytic enzymes. Biochem. J. 343 (1999) 115-124
    • (1999) Biochem. J. , vol.343 , pp. 115-124
    • Dandekar, T.1    Schuster, S.2    Snel, B.3    Huynen, M.4    Bork, P.5
  • 7
    • 33645804408 scopus 로고    scopus 로고
    • MayDay - a microarray data analysis workbench
    • Dietzsch J., Gehlenborg N., and Nieselt K. MayDay - a microarray data analysis workbench. Bioinformatics 22 (2006) 1010-1012
    • (2006) Bioinformatics , vol.22 , pp. 1010-1012
    • Dietzsch, J.1    Gehlenborg, N.2    Nieselt, K.3
  • 8
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004) 1792-1797
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 9
    • 0030007094 scopus 로고    scopus 로고
    • A large scale search for genes on which positive selection may operate
    • Endo T., Ikeo K., and Gojobori T. A large scale search for genes on which positive selection may operate. Mol. Biol. Evol. 13 (1996) 685-690
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 685-690
    • Endo, T.1    Ikeo, K.2    Gojobori, T.3
  • 10
    • 0032744302 scopus 로고    scopus 로고
    • Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics information
    • Forst C.V., and Schulten K. Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics information. J. Comput. Biol. 6 (1999) 343-360
    • (1999) J. Comput. Biol. , vol.6 , pp. 343-360
    • Forst, C.V.1    Schulten, K.2
  • 11
    • 0034991456 scopus 로고    scopus 로고
    • Phylogenetic analysis of metabolic pathways
    • Forst C.V., and Schulten K. Phylogenetic analysis of metabolic pathways. J. Mol. Evol. 52 (2001) 471-489
    • (2001) J. Mol. Evol. , vol.52 , pp. 471-489
    • Forst, C.V.1    Schulten, K.2
  • 12
    • 0034073452 scopus 로고    scopus 로고
    • Darwin v. 2.0: an interpreted computer language for the biosciences
    • Gonnet G.H., Hallett M.T., Korostensky C., and Bernardin L. Darwin v. 2.0: an interpreted computer language for the biosciences. Bioinformatics 16 (2000) 101-103
    • (2000) Bioinformatics , vol.16 , pp. 101-103
    • Gonnet, G.H.1    Hallett, M.T.2    Korostensky, C.3    Bernardin, L.4
  • 15
    • 27244436714 scopus 로고    scopus 로고
    • Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
    • Karp P.D., et al. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res. 19 (2005) 6083-6089
    • (2005) Nucleic Acids Res. , vol.19 , pp. 6083-6089
    • Karp, P.D.1
  • 16
    • 23944503341 scopus 로고    scopus 로고
    • Datasets for evolutionary comparative genomics
    • Liberles D.A. Datasets for evolutionary comparative genomics. Genome Biol. 6 (2005) 117
    • (2005) Genome Biol. , vol.6 , pp. 117
    • Liberles, D.A.1
  • 18
    • 22344447288 scopus 로고    scopus 로고
    • Parallelisation of the BLAST algorithm
    • Qi Y., and Lin F. Parallelisation of the BLAST algorithm. Mol. Cell. Biol. Lett. 10 (2005) 281-285
    • (2005) Mol. Cell. Biol. Lett. , vol.10 , pp. 281-285
    • Qi, Y.1    Lin, F.2
  • 19
    • 33747239595 scopus 로고    scopus 로고
    • A systematic search for positive selection in higher plants (embryophytes)
    • Roth C., and Liberles D.A. A systematic search for positive selection in higher plants (embryophytes). BMC Plant Biol. 6 (2006) 12
    • (2006) BMC Plant Biol. , vol.6 , pp. 12
    • Roth, C.1    Liberles, D.A.2
  • 21
    • 33845625017 scopus 로고    scopus 로고
    • Roth, C., et al., in press. Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms. J. Exp. Zool.
  • 22
    • 33144458377 scopus 로고    scopus 로고
    • Evolution of enzymes in a series is driven by dissimilar functional demands
    • Salvador A., and Savageau M.A. Evolution of enzymes in a series is driven by dissimilar functional demands. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 2226-2231
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 2226-2231
    • Salvador, A.1    Savageau, M.A.2
  • 23
    • 0037387451 scopus 로고    scopus 로고
    • Significantly different patterns of amino acid replacement after gene duplication as compared to after speciation
    • Seoighe C., Johnston C.R., and Shields D.C. Significantly different patterns of amino acid replacement after gene duplication as compared to after speciation. Mol. Biol. Evol. 20 (2003) 484-490
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 484-490
    • Seoighe, C.1    Johnston, C.R.2    Shields, D.C.3
  • 24
    • 2442537233 scopus 로고    scopus 로고
    • Gene regulatory network growth by duplication
    • Teichmann S.A., and Babu M.M. Gene regulatory network growth by duplication. Nat. Gen. 36 (2004) 492-496
    • (2004) Nat. Gen. , vol.36 , pp. 492-496
    • Teichmann, S.A.1    Babu, M.M.2
  • 25
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997) 555-556
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 26
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15 (1998) 568-573
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 568-573
    • Yang, Z.1
  • 27
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang Z., and Bielawski J.P. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15 (2000) 496-503
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 28
    • 14544286855 scopus 로고    scopus 로고
    • The selective cause of an ancient adaptation
    • Zhu G., Golding G.B., and Dean A.M. The selective cause of an ancient adaptation. Science 307 (2005) 1279-1282
    • (2005) Science , vol.307 , pp. 1279-1282
    • Zhu, G.1    Golding, G.B.2    Dean, A.M.3
  • 29
    • 0034791426 scopus 로고    scopus 로고
    • A simple algorithm to infer gene duplication and speciation events on a gene tree
    • Zmasek C.M., and Eddy S.R. A simple algorithm to infer gene duplication and speciation events on a gene tree. Bioinformatics 17 (2001) 821-828
    • (2001) Bioinformatics , vol.17 , pp. 821-828
    • Zmasek, C.M.1    Eddy, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.